SNP Links for Gene (Select 2848) - SNP

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Select item 14905753821.

rs1490575382 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:200871035 (GRCh38)
1:200840163 (GRCh37)
Canonical SPDI:: NC_000001.11:200871034:G:A
Gene:: GPR25 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.200871035G>A, NC_000001.10:g.200840163G>A

Select item 14890364622.

rs1489036462 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:200873364 (GRCh38)
1:200842492 (GRCh37)
Canonical SPDI:: NC_000001.11:200873363:T:C
Gene:: GPR25 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.200873364T>C, NC_000001.10:g.200842492T>C, NM_005298.4:c.327T>C, NM_005298.3:c.327T>C

Select item 14890015413.

rs1489001541 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:200872347 (GRCh38)
1:200841475 (GRCh37)
Canonical SPDI:: NC_000001.11:200872346:T:C
Gene:: GPR25 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.200872347T>C, NC_000001.10:g.200841475T>C

Select item 14887251984.

rs1488725198 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:200873672 (GRCh38)
1:200842800 (GRCh37)
Canonical SPDI:: NC_000001.11:200873671:T:G
Gene:: GPR25 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.200873672T>G, NC_000001.10:g.200842800T>G, NM_005298.4:c.635T>G, NM_005298.3:c.635T>G, NP_005289.2:p.Val212Gly

Select item 14881449025.

rs1488144902 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:200874014 (GRCh38)
1:200843142 (GRCh37)
Canonical SPDI:: NC_000001.11:200874013:C:G,NC_000001.11:200874013:C:T
Gene:: GPR25 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.200874014C>G, NC_000001.11:g.200874014C>T, NC_000001.10:g.200843142C>G, NC_000001.10:g.200843142C>T, NM_005298.4:c.977C>G, NM_005298.4:c.977C>T, NM_005298.3:c.977C>G, NM_005298.3:c.977C>T, NP_005289.2:p.Thr326Ser, NP_005289.2:p.Thr326Ile

Select item 14880684946.

rs1488068494 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:200873820 (GRCh38)
1:200842948 (GRCh37)
Canonical SPDI:: NC_000001.11:200873819:C:T
Gene:: GPR25 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.200873820C>T, NC_000001.10:g.200842948C>T, NM_005298.4:c.783C>T, NM_005298.3:c.783C>T

Select item 14877507587.

rs1487750758 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:200873417 (GRCh38)
1:200842545 (GRCh37)
Canonical SPDI:: NC_000001.11:200873416:C:T
Gene:: GPR25 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
HGVS:: NC_000001.11:g.200873417C>T, NC_000001.10:g.200842545C>T, NM_005298.4:c.380C>T, NM_005298.3:c.380C>T, NP_005289.2:p.Ala127Val

Select item 14871646028.

rs1487164602 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:200873735 (GRCh38)
1:200842863 (GRCh37)
Canonical SPDI:: NC_000001.11:200873734:C:G,NC_000001.11:200873734:C:T
Gene:: GPR25 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
G=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.200873735C>G, NC_000001.11:g.200873735C>T, NC_000001.10:g.200842863C>G, NC_000001.10:g.200842863C>T, NM_005298.4:c.698C>G, NM_005298.4:c.698C>T, NM_005298.3:c.698C>G, NM_005298.3:c.698C>T, NP_005289.2:p.Pro233Arg, NP_005289.2:p.Pro233Leu

Select item 14852568889.

rs1485256888 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:200873575 (GRCh38)
1:200842703 (GRCh37)
Canonical SPDI:: NC_000001.11:200873574:T:C
Gene:: GPR25 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.200873575T>C, NC_000001.10:g.200842703T>C, NM_005298.4:c.538T>C, NM_005298.3:c.538T>C

Select item 148397821110.

rs1483978211 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:200873873 (GRCh38)
1:200843001 (GRCh37)
Canonical SPDI:: NC_000001.11:200873872:G:A
Gene:: GPR25 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
HGVS:: NC_000001.11:g.200873873G>A, NC_000001.10:g.200843001G>A, NM_005298.4:c.836G>A, NM_005298.3:c.836G>A, NP_005289.2:p.Cys279Tyr

Select item 148385187611.

rs1483851876 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:200872698 (GRCh38)
1:200841826 (GRCh37)
Canonical SPDI:: NC_000001.11:200872697:T:C
Gene:: GPR25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.200872698T>C, NC_000001.10:g.200841826T>C

Select item 148331268212.

rs1483312682 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:200872557 (GRCh38)
1:200841685 (GRCh37)
Canonical SPDI:: NC_000001.11:200872556:C:T
Gene:: GPR25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.200872557C>T, NC_000001.10:g.200841685C>T

Select item 148230976813.

rs1482309768 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:200872209 (GRCh38)
1:200841337 (GRCh37)
Canonical SPDI:: NC_000001.11:200872208:G:T
Gene:: GPR25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.200872209G>T, NC_000001.10:g.200841337G>T

Select item 148085600714.

rs1480856007 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:200871176 (GRCh38)
1:200840304 (GRCh37)
Canonical SPDI:: NC_000001.11:200871175:T:G
Gene:: GPR25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.200871176T>G, NC_000001.10:g.200840304T>G

Select item 147766173315.

rs1477661733 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:200873337 (GRCh38)
1:200842465 (GRCh37)
Canonical SPDI:: NC_000001.11:200873336:G:A
Gene:: GPR25 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.200873337G>A, NC_000001.10:g.200842465G>A, NM_005298.4:c.300G>A, NM_005298.3:c.300G>A

Select item 147758200416.

rs1477582004 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:200872332 (GRCh38)
1:200841460 (GRCh37)
Canonical SPDI:: NC_000001.11:200872331:G:A,NC_000001.11:200872331:G:T
Gene:: GPR25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.200872332G>A, NC_000001.11:g.200872332G>T, NC_000001.10:g.200841460G>A, NC_000001.10:g.200841460G>T

Select item 147667807517.

rs1476678075 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:200873010 (GRCh38)
1:200842138 (GRCh37)
Canonical SPDI:: NC_000001.11:200873009:C:T
Gene:: GPR25 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.200873010C>T, NC_000001.10:g.200842138C>T, NM_005298.4:c.-28C>T, NM_005298.3:c.-28C>T

Select item 147338938818.

rs1473389388 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:200873830 (GRCh38)
1:200842958 (GRCh37)
Canonical SPDI:: NC_000001.11:200873829:G:T
Gene:: GPR25 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.200873830G>T, NC_000001.10:g.200842958G>T, NM_005298.4:c.793G>T, NM_005298.3:c.793G>T, NP_005289.2:p.Ala265Ser

Select item 147331650219.

rs1473316502 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:200872809 (GRCh38)
1:200841937 (GRCh37)
Canonical SPDI:: NC_000001.11:200872808:T:A
Gene:: GPR25 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.200872809T>A, NC_000001.10:g.200841937T>A

Select item 147284646320.

rs1472846463 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:200873627 (GRCh38)
1:200842755 (GRCh37)
Canonical SPDI:: NC_000001.11:200873626:A:G
Gene:: GPR25 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.200873627A>G, NC_000001.10:g.200842755A>G, NM_005298.4:c.590A>G, NM_005298.3:c.590A>G, NP_005289.2:p.His197Arg

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