SNP Links for Gene (Select 284998) - SNP

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Select item 14914664391.

rs1491466439 has merged into rs5833109 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA [Show Flanks]
Chromosome:: 2:104753393 (GRCh38)
2:105369851 (GRCh37)
Canonical SPDI:: NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAA,NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAAA,NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAAAAAAA
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
-=0.2193/834 (1000Genomes)
HGVS:: NC_000002.12:g.104753393_104753394del, NC_000002.12:g.104753394del, NC_000002.12:g.104753394dup, NC_000002.12:g.104753393_104753394dup, NC_000002.12:g.104753392_104753394dup, NC_000002.11:g.105369851_105369852del, NC_000002.11:g.105369852del, NC_000002.11:g.105369852dup, NC_000002.11:g.105369851_105369852dup, NC_000002.11:g.105369850_105369852dup

Select item 14910842372.

rs1491084237 has merged into rs5833109 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA [Show Flanks]
Chromosome:: 2:104753393 (GRCh38)
2:105369851 (GRCh37)
Canonical SPDI:: NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAA,NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAAA,NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:104753384:AAAAAAAAAA:AAAAAAAAAAAAA
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
-=0.2193/834 (1000Genomes)
HGVS:: NC_000002.12:g.104753393_104753394del, NC_000002.12:g.104753394del, NC_000002.12:g.104753394dup, NC_000002.12:g.104753393_104753394dup, NC_000002.12:g.104753392_104753394dup, NC_000002.11:g.105369851_105369852del, NC_000002.11:g.105369852del, NC_000002.11:g.105369852dup, NC_000002.11:g.105369851_105369852dup, NC_000002.11:g.105369850_105369852dup

Select item 14909078853.

rs1490907885 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:104747675 (GRCh38)
2:105364133 (GRCh37)
Canonical SPDI:: NC_000002.12:104747674:C:T
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.104747675C>T, NC_000002.11:g.105364133C>T

Select item 14906948894.

rs1490694889 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:104758876 (GRCh38)
2:105375334 (GRCh37)
Canonical SPDI:: NC_000002.12:104758875:G:A
Gene:: LINC01114 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.104758876G>A, NC_000002.11:g.105375334G>A

Select item 14905364015.

rs1490536401 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:104755287 (GRCh38)
2:105371745 (GRCh37)
Canonical SPDI:: NC_000002.12:104755286:T:C
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.104755287T>C, NC_000002.11:g.105371745T>C

Select item 14904710556.

rs1490471055 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:104749005 (GRCh38)
2:105365463 (GRCh37)
Canonical SPDI:: NC_000002.12:104749004:G:A
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.104749005G>A, NC_000002.11:g.105365463G>A

Select item 14900472917.

rs1490047291 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:104755705 (GRCh38)
2:105372163 (GRCh37)
Canonical SPDI:: NC_000002.12:104755704:G:A
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.104755705G>A, NC_000002.11:g.105372163G>A

Select item 14899045148.

rs1489904514 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:104755624 (GRCh38)
2:105372082 (GRCh37)
Canonical SPDI:: NC_000002.12:104755623:G:A,NC_000002.12:104755623:G:T
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.104755624G>A, NC_000002.12:g.104755624G>T, NC_000002.11:g.105372082G>A, NC_000002.11:g.105372082G>T

Select item 14894579299.

rs1489457929 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:104754332 (GRCh38)
2:105370790 (GRCh37)
Canonical SPDI:: NC_000002.12:104754331:G:C
Gene:: LINC01114 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.104754332G>C, NC_000002.11:g.105370790G>C, NR_038231.1:n.1748C>G

Select item 148942655510.

rs1489426555 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCT>- [Show Flanks]
Chromosome:: 2:104757242 (GRCh38)
2:105373700 (GRCh37)
Canonical SPDI:: NC_000002.12:104757239:CTGCT:CT
Gene:: LINC01114 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CT=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000038/10 (TOPMED)
HGVS:: NC_000002.12:g.104757242_104757244del, NC_000002.11:g.105373700_105373702del, NR_038231.1:n.478_480del

Select item 148917211711.

rs1489172117 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:104749932 (GRCh38)
2:105366390 (GRCh37)
Canonical SPDI:: NC_000002.12:104749931:G:A,NC_000002.12:104749931:G:T
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.104749932G>A, NC_000002.12:g.104749932G>T, NC_000002.11:g.105366390G>A, NC_000002.11:g.105366390G>T

Select item 148914340612.

rs1489143406 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:104750859 (GRCh38)
2:105367317 (GRCh37)
Canonical SPDI:: NC_000002.12:104750858:C:A,NC_000002.12:104750858:C:T
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.104750859C>A, NC_000002.12:g.104750859C>T, NC_000002.11:g.105367317C>A, NC_000002.11:g.105367317C>T

Select item 148891549913.

rs1488915499 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:104757362 (GRCh38)
2:105373820 (GRCh37)
Canonical SPDI:: NC_000002.12:104757361:G:A
Gene:: LINC01114 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000029/4 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000002.12:g.104757362G>A, NC_000002.11:g.105373820G>A, NR_038231.1:n.358C>T

Select item 148877337314.

rs1488773373 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:104750034 (GRCh38)
2:105366492 (GRCh37)
Canonical SPDI:: NC_000002.12:104750033:C:T
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.104750034C>T, NC_000002.11:g.105366492C>T

Select item 148849701815.

rs1488497018 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:104749006 (GRCh38)
2:105365464 (GRCh37)
Canonical SPDI:: NC_000002.12:104749005:T:C
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000224/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000002.12:g.104749006T>C, NC_000002.11:g.105365464T>C

Select item 148826850316.

rs1488268503 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:104756118 (GRCh38)
2:105372576 (GRCh37)
Canonical SPDI:: NC_000002.12:104756117:G:A
Gene:: LINC01114 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.0011/2 (Korea1K)
HGVS:: NC_000002.12:g.104756118G>A, NC_000002.11:g.105372576G>A, NR_038231.1:n.1602C>T

Select item 148815901117.

rs1488159011 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 2:104751280 (GRCh38)
2:105367738 (GRCh37)
Canonical SPDI:: NC_000002.12:104751279:G:
Gene:: LINC01114 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.104751280del, NC_000002.11:g.105367738del

Select item 148800182618.

rs1488001826 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:104759691 (GRCh38)
2:105376149 (GRCh37)
Canonical SPDI:: NC_000002.12:104759690:A:G
Gene:: LINC01114 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.00008/1 (ALFA)
G=0.00003/3 (GnomAD)
HGVS:: NC_000002.12:g.104759691A>G, NC_000002.11:g.105376149A>G

Select item 148743876619.

rs1487438766 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:104758119 (GRCh38)
2:105374577 (GRCh37)
Canonical SPDI:: NC_000002.12:104758118:C:A,NC_000002.12:104758118:C:T
Gene:: LINC01114 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.104758119C>A, NC_000002.12:g.104758119C>T, NC_000002.11:g.105374577C>A, NC_000002.11:g.105374577C>T

Select item 148644368320.

rs1486443683 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:104759426 (GRCh38)
2:105375884 (GRCh37)
Canonical SPDI:: NC_000002.12:104759425:A:C
Gene:: LINC01114 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.104759426A>C, NC_000002.11:g.105375884A>C

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