SNP Links for Gene (Select 2853) - SNP

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Select item 14899434831.

rs1489943483 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 6:167157794 (GRCh38)
6:167571282 (GRCh37)
Canonical SPDI:: NC_000006.12:167157793:A:C,NC_000006.12:167157793:A:G
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.167157794A>C, NC_000006.12:g.167157794A>G, NC_000006.11:g.167571282A>C, NC_000006.11:g.167571282A>G, NM_005299.3:c.38T>G, NM_005299.3:c.38T>C, NM_005299.2:c.38T>G, NM_005299.2:c.38T>C, NP_005290.2:p.Val13Gly, NP_005290.2:p.Val13Ala

Select item 14885419012.

rs1488541901 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167157783 (GRCh38)
6:167571271 (GRCh37)
Canonical SPDI:: NC_000006.12:167157782:C:T
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.167157783C>T, NC_000006.11:g.167571271C>T, NM_005299.3:c.49G>A, NM_005299.2:c.49G>A, NP_005290.2:p.Val17Met

Select item 14885126293.

rs1488512629 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:167157268 (GRCh38)
6:167570756 (GRCh37)
Canonical SPDI:: NC_000006.12:167157267:G:A,NC_000006.12:167157267:G:C
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000051/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.167157268G>A, NC_000006.12:g.167157268G>C, NC_000006.11:g.167570756G>A, NC_000006.11:g.167570756G>C, NM_005299.3:c.564C>T, NM_005299.3:c.564C>G, NM_005299.2:c.564C>T, NM_005299.2:c.564C>G

Select item 14880885484.

rs1488088548 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:167157109 (GRCh38)
6:167570597 (GRCh37)
Canonical SPDI:: NC_000006.12:167157108:G:A
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.167157109G>A, NC_000006.11:g.167570597G>A, NM_005299.3:c.723C>T, NM_005299.2:c.723C>T

Select item 14879304085.

rs1487930408 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:167157338 (GRCh38)
6:167570826 (GRCh37)
Canonical SPDI:: NC_000006.12:167157337:A:G
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.167157338A>G, NC_000006.11:g.167570826A>G, NM_005299.3:c.494T>C, NM_005299.2:c.494T>C, NP_005290.2:p.Phe165Ser

Select item 14872904276.

rs1487290427 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:167159621 (GRCh38)
6:167573109 (GRCh37)
Canonical SPDI:: NC_000006.12:167159620:G:A
Gene:: GPR31 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000006.12:g.167159621G>A, NC_000006.11:g.167573109G>A

Select item 14862557967.

rs1486255796 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 6:167159767 (GRCh38)
6:167573255 (GRCh37)
Canonical SPDI:: NC_000006.12:167159766:A:G,NC_000006.12:167159766:A:T
Gene:: GPR31 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.167159767A>G, NC_000006.12:g.167159767A>T, NC_000006.11:g.167573255A>G, NC_000006.11:g.167573255A>T

Select item 14855434678.

rs1485543467 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:167157725 (GRCh38)
6:167571213 (GRCh37)
Canonical SPDI:: NC_000006.12:167157724:A:G
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167157725A>G, NC_000006.11:g.167571213A>G, NM_005299.3:c.107T>C, NM_005299.2:c.107T>C, NP_005290.2:p.Leu36Pro

Select item 14823623869.

rs1482362386 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 6:167157293 (GRCh38)
6:167570781 (GRCh37)
Canonical SPDI:: NC_000006.12:167157292:G:
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,frameshift_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000045/12 (TOPMED)
HGVS:: NC_000006.12:g.167157293del, NC_000006.11:g.167570781del, NM_005299.3:c.539del, NM_005299.2:c.539del, NP_005290.2:p.Ala180fs

Select item 148185523910.

rs1481855239 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:167159602 (GRCh38)
6:167573090 (GRCh37)
Canonical SPDI:: NC_000006.12:167159601:G:A
Gene:: GPR31 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167159602G>A, NC_000006.11:g.167573090G>A

Select item 148062840411.

rs1480628404 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:167156958 (GRCh38)
6:167570446 (GRCh37)
Canonical SPDI:: NC_000006.12:167156957:A:T
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167156958A>T, NC_000006.11:g.167570446A>T, NM_005299.3:c.874T>A, NM_005299.2:c.874T>A, NP_005290.2:p.Ser292Thr

Select item 148039760212.

rs1480397602 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:167158066 (GRCh38)
6:167571554 (GRCh37)
Canonical SPDI:: NC_000006.12:167158065:T:C
Gene:: GPR31 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167158066T>C, NC_000006.11:g.167571554T>C

Select item 148029931913.

rs1480299319 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:167157752 (GRCh38)
6:167571240 (GRCh37)
Canonical SPDI:: NC_000006.12:167157751:A:T
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.167157752A>T, NC_000006.11:g.167571240A>T, NM_005299.3:c.80T>A, NM_005299.2:c.80T>A, NP_005290.2:p.Leu27Gln

Select item 147911736014.

rs1479117360 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:167157812 (GRCh38)
6:167571300 (GRCh37)
Canonical SPDI:: NC_000006.12:167157811:G:A
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: A=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000006.12:g.167157812G>A, NC_000006.11:g.167571300G>A, NM_005299.3:c.20C>T, NM_005299.2:c.20C>T, NP_005290.2:p.Ser7Leu

Select item 147910729615.

rs1479107296 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 6:167156902 (GRCh38)
6:167570391 (GRCh37)
Canonical SPDI:: NC_000006.12:167156902:GGGGG:GGGGGG
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,frameshift_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.167156907dup, NC_000006.11:g.167570395dup, NM_005299.3:c.929dup, NM_005299.2:c.929dup, NP_005290.2:p.Asp311fs

Select item 147900043816.

rs1479000438 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167157350 (GRCh38)
6:167570838 (GRCh37)
Canonical SPDI:: NC_000006.12:167157349:C:T
Gene:: GPR31 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.167157350C>T, NC_000006.11:g.167570838C>T, NM_005299.3:c.482G>A, NM_005299.2:c.482G>A, NP_005290.2:p.Arg161Lys

Select item 147819206017.

rs1478192060 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:167159719 (GRCh38)
6:167573207 (GRCh37)
Canonical SPDI:: NC_000006.12:167159718:A:G
Gene:: GPR31 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000054/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.167159719A>G, NC_000006.11:g.167573207A>G

Select item 147802014818.

rs1478020148 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:167157552 (GRCh38)
6:167571040 (GRCh37)
Canonical SPDI:: NC_000006.12:167157551:G:C
Gene:: GPR31 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.167157552G>C, NC_000006.11:g.167571040G>C, NM_005299.3:c.280C>G, NM_005299.2:c.280C>G, NP_005290.2:p.Leu94Val

Select item 147755740719.

rs1477557407 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 6:167156717 (GRCh38)
6:167570205 (GRCh37)
Canonical SPDI:: NC_000006.12:167156715:AGA:A
Gene:: GPR31 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.167156717_167156718del, NC_000006.11:g.167570205_167570206del, NM_005299.3:c.*155_*156del

Select item 147727110820.

rs1477271108 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:167159641 (GRCh38)
6:167573129 (GRCh37)
Canonical SPDI:: NC_000006.12:167159640:G:A
Gene:: GPR31 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000006.12:g.167159641G>A, NC_000006.11:g.167573129G>A

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