SNP Links for Gene (Select 285407) - SNP

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Select item 14915771811.

rs1491577181 has merged into rs35094143 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAA>-,A,AA,AAA,AAAA,AAAAAA [Show Flanks]
Chromosome:: 11:71798815 (GRCh38)
11:71509861 (GRCh37)
Canonical SPDI:: NC_000011.10:71798803:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000011.10:71798803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:71798803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:71798803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:71798803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:71798803:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
-=0.475/19 (GENOME_DK)
HGVS:: NC_000011.10:g.71798815_71798819del, NC_000011.10:g.71798816_71798819del, NC_000011.10:g.71798817_71798819del, NC_000011.10:g.71798818_71798819del, NC_000011.10:g.71798819del, NC_000011.10:g.71798819dup, NC_000011.9:g.71509861_71509865del, NC_000011.9:g.71509862_71509865del, NC_000011.9:g.71509863_71509865del, NC_000011.9:g.71509864_71509865del, NC_000011.9:g.71509865del, NC_000011.9:g.71509865dup

Select item 14915515912.

rs1491551591 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 11:71798885 (GRCh38)
11:71509931 (GRCh37)
Canonical SPDI:: NC_000011.10:71798882:CTCT:CT
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCT=0.005759/94 (ALFA)
-=0.007123/118 (TOMMO)
-=0.008063/878 (GnomAD)
-=0.008588/55 (1000Genomes)
-=0.016722/10 (NorthernSweden)
HGVS:: NC_000011.10:g.71798883CT[1], NC_000011.9:g.71509929CT[1]

Select item 14914627713.

rs1491462771 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT,GTGT,GTGTGT,GTGTGTGT,GTGTGTGTGT,GTGTGTGTGTGT [Show Flanks]
Chromosome:: 11:71798883 (GRCh38)
11:71509930 (GRCh37)
Canonical SPDI:: NC_000011.10:71798883:T:TGT,NC_000011.10:71798883:T:TGTGT,NC_000011.10:71798883:T:TGTGTGT,NC_000011.10:71798883:T:TGTGTGTGT,NC_000011.10:71798883:T:TGTGTGTGTGT,NC_000011.10:71798883:T:TGTGTGTGTGTGT
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGT=0./0 (ALFA)
HGVS:: NC_000011.10:g.71798884_71798885insGT, NC_000011.10:g.71798884_71798885insGTGT, NC_000011.10:g.71798885GT[3], NC_000011.10:g.71798885GT[4], NC_000011.10:g.71798885GT[5], NC_000011.10:g.71798885GT[6], NC_000011.9:g.71509930_71509931insGT, NC_000011.9:g.71509930_71509931insGTGT, NC_000011.9:g.71509931GT[3], NC_000011.9:g.71509931GT[4], NC_000011.9:g.71509931GT[5], NC_000011.9:g.71509931GT[6]

Select item 14913976594.

rs1491397659 [Homo sapiens]

Variant type:: INS
Alleles:: ->TC [Show Flanks]
Chromosome:: 11:71798804 (GRCh38)
11:71509851 (GRCh37)
Canonical SPDI:: NC_000011.10:71798804::TC
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TC=0./0 (ALFA)
TC=0.000004/1 (TOPMED)
TC=0.000035/1 (GnomAD)
HGVS:: NC_000011.10:g.71798804_71798805insTC, NC_000011.9:g.71509850_71509851insTC

Select item 14912795115.

rs1491279511 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CAA [Show Flanks]
Chromosome:: 11:71797326 (GRCh38)
11:71508373 (GRCh37)
Canonical SPDI:: NC_000011.10:71797326:CAA:CAACAA
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CAACAA=0./0 (ALFA)
CAA=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.71797327_71797329dup, NC_000011.9:g.71508373_71508375dup

Select item 14911784436.

rs1491178443 [Homo sapiens]

Variant type:: DEL
Alleles:: GC>- [Show Flanks]
Chromosome:: 11:71797326 (GRCh38)
11:71508372 (GRCh37)
Canonical SPDI:: NC_000011.10:71797325:GC:
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00514/61 (ALFA)
-=0.00096/51 (GnomAD)
HGVS:: NC_000011.10:g.71797326_71797327del, NC_000011.9:g.71508372_71508373del

Select item 14908364587.

rs1490836458 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:71804359 (GRCh38)
11:71515405 (GRCh37)
Canonical SPDI:: NC_000011.10:71804358:G:T
Gene:: ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.71804359G>T, NC_000011.9:g.71515405G>T

Select item 14907825608.

rs1490782560 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:71795455 (GRCh38)
11:71506501 (GRCh37)
Canonical SPDI:: NC_000011.10:71795454:G:C
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00011/3 (TOMMO)
HGVS:: NC_000011.10:g.71795455G>C, NC_000011.9:g.71506501G>C

Select item 14906624599.

rs1490662459 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:71810961 (GRCh38)
11:71522007 (GRCh37)
Canonical SPDI:: NC_000011.10:71810960:A:T
Gene:: ALG1L9P (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000015/2 (GnomAD)
A=0.5/2 (SGDP_PRJ)
HGVS:: NC_000011.10:g.71810961A>T, NC_000011.9:g.71522007A>T, NR_073387.1:n.1505T>A

Select item 149058160010.

rs1490581600 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:71799912 (GRCh38)
11:71510958 (GRCh37)
Canonical SPDI:: NC_000011.10:71799911:A:G
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.71799912A>G, NC_000011.9:g.71510958A>G, NM_018172.3:c.*265A>G, NM_018172.2:c.*265A>G, NM_152563.2:c.*265A>G, NM_001099653.1:c.*265A>G

Select item 149050173511.

rs1490501735 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:71805570 (GRCh38)
11:71516616 (GRCh37)
Canonical SPDI:: NC_000011.10:71805569:C:T
Gene:: ALG1L9P (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000034/9 (TOPMED)
T=0.00005/7 (GnomAD)
HGVS:: NC_000011.10:g.71805570C>T, NC_000011.9:g.71516616C>T, NR_172893.1:n.3556G>A, NR_172895.1:n.3475G>A, NR_172894.1:n.3350G>A

Select item 149037288212.

rs1490372882 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:71804725 (GRCh38)
11:71515771 (GRCh37)
Canonical SPDI:: NC_000011.10:71804724:G:A
Gene:: ALG1L9P (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.71804725G>A, NC_000011.9:g.71515771G>A

Select item 149035444313.

rs1490354443 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:71815718 (GRCh38)
11:71526764 (GRCh37)
Canonical SPDI:: NC_000011.10:71815717:G:A
Gene:: ALG1L9P (Varview), ZNF705EP (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.71815718G>A, NC_000011.9:g.71526764G>A, NM_001278713.2:c.*794C>T, NR_172892.1:n.1769C>T, NM_001278713.1:c.*794C>T

Select item 149031930414.

rs1490319304 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:71812318 (GRCh38)
11:71523364 (GRCh37)
Canonical SPDI:: NC_000011.10:71812317:C:T
Gene:: ALG1L9P (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.71812318C>T, NC_000011.9:g.71523364C>T

Select item 149030661915.

rs1490306619 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 11:71801116 (GRCh38)
11:71512162 (GRCh37)
Canonical SPDI:: NC_000011.10:71801115:G:A,NC_000011.10:71801115:G:C,NC_000011.10:71801115:G:T
Gene:: ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.71801116G>A, NC_000011.10:g.71801116G>C, NC_000011.10:g.71801116G>T, NC_000011.9:g.71512162G>A, NC_000011.9:g.71512162G>C, NC_000011.9:g.71512162G>T, NM_018172.3:c.*1469G>A, NM_018172.3:c.*1469G>C, NM_018172.3:c.*1469G>T, NM_018172.2:c.*1469G>A, NM_018172.2:c.*1469G>C, NM_018172.2:c.*1469G>T, NM_152563.2:c.*1469G>A, NM_152563.2:c.*1469G>C, NM_152563.2:c.*1469G>T, NM_001099653.1:c.*1469G>A, NM_001099653.1:c.*1469G>C, NM_001099653.1:c.*1469G>T

Select item 149024397116.

rs1490243971 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:71795191 (GRCh38)
11:71506237 (GRCh37)
Canonical SPDI:: NC_000011.10:71795190:G:T
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,splice_donor_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000043/6 (GnomAD)
T=0.000045/12 (TOPMED)
HGVS:: NC_000011.10:g.71795191G>T, NC_000011.9:g.71506237G>T, NR_073386.1:n.760C>A

Select item 149004482217.

rs1490044822 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:71805369 (GRCh38)
11:71516415 (GRCh37)
Canonical SPDI:: NC_000011.10:71805368:G:A
Gene:: ALG1L9P (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.71805369G>A, NC_000011.9:g.71516415G>A, NR_172893.1:n.3757C>T, NR_172895.1:n.3676C>T, NR_172894.1:n.3551C>T

Select item 149002970518.

rs1490029705 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 11:71806282 (GRCh38)
11:71517328 (GRCh37)
Canonical SPDI:: NC_000011.10:71806281:G:
Gene:: ALG1L9P (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.71806282del, NC_000011.9:g.71517328del, NR_172893.1:n.2844del, NR_172895.1:n.2763del, NR_172894.1:n.2638del

Select item 148999364519.

rs1489993645 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:71804756 (GRCh38)
11:71515802 (GRCh37)
Canonical SPDI:: NC_000011.10:71804755:G:A,NC_000011.10:71804755:G:C
Gene:: ALG1L9P (Varview), XNDC1N-ZNF705EP-ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.71804756G>A, NC_000011.10:g.71804756G>C, NC_000011.9:g.71515802G>A, NC_000011.9:g.71515802G>C

Select item 148974750920.

rs1489747509 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTGT>- [Show Flanks]
Chromosome:: 11:71798885 (GRCh38)
11:71509931 (GRCh37)
Canonical SPDI:: NC_000011.10:71798883:TCTGT:T
Gene:: FAM86C1P (Varview), ALG1L9P (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.01391/165 (ALFA)
-=0.010607/175 (TOMMO)
-=0.015101/9 (NorthernSweden)
-=0.016548/1796 (GnomAD)
HGVS:: NC_000011.10:g.71798885_71798888del, NC_000011.9:g.71509931_71509934del