SNP Links for Gene (Select 285492) - SNP

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Select item 14913107701.

rs1491310770 has merged into rs1429583000 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAG>-,GAGGAG [Show Flanks]
Chromosome:: 4:3576360 (GRCh38)
4:3578087 (GRCh37)
Canonical SPDI:: NC_000004.12:3576347:GAGGAGGAGGAGGAG:GAGGAGGAGGAG,NC_000004.12:3576347:GAGGAGGAGGAGGAG:GAGGAGGAGGAGGAGGAG
Gene:: LINC00955 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGGAGGAGGAGGAGGAG=0./0 (ALFA)
-=0.000026/7 (TOPMED)
HGVS:: NC_000004.12:g.3576348GAG[4], NC_000004.12:g.3576348GAG[6], NC_000004.11:g.3578075GAG[4], NC_000004.11:g.3578075GAG[6]

Select item 14913061972.

rs1491306197 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 4:3588473 (GRCh38)
4:3590200 (GRCh37)
Canonical SPDI:: NC_000004.12:3588470:TCTC:TC
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.3588471TC[1], NC_000004.11:g.3590198TC[1]

Select item 14913054833.

rs1491305483 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTC [Show Flanks]
Chromosome:: 4:3588471 (GRCh38)
4:3590199 (GRCh37)
Canonical SPDI:: NC_000004.12:3588471:CTCCTC:CTCCTCCTC
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTCCTCCTC=0./0 (ALFA)
CTC=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.3588472CTC[3], NC_000004.11:g.3590199CTC[3]

Select item 14912483594.

rs1491248359 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 4:3576349 (GRCh38)
4:3578076 (GRCh37)
Canonical SPDI:: NC_000004.12:3576346:AGAG:AG
Gene:: LINC00955 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000004.12:g.3576347AG[1], NC_000004.11:g.3578074AG[1]

Select item 14911845105.

rs1491184510 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 4:3580320 (GRCh38)
4:3582047 (GRCh37)
Canonical SPDI:: NC_000004.12:3580318:TTT:T
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00025/3 (ALFA)
-=0.03347/129 (ALSPAC)
-=0.03371/125 (TWINSUK)
HGVS:: NC_000004.12:g.3580320_3580321del, NC_000004.11:g.3582047_3582048del

Select item 14910939436.

rs1491093943 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 4:3587974 (GRCh38)
4:3589701 (GRCh37)
Canonical SPDI:: NC_000004.12:3587972:AGA:A
Gene:: LINC00955 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: -=0.00025/4 (ExAC)
HGVS:: NC_000004.12:g.3587974_3587975del, NC_000004.11:g.3589701_3589702del, NR_040045.1:n.355_356del, NM_173661.1:c.69_70del

Select item 14910736177.

rs1491073617 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 4:3583818 (GRCh38)
4:3585545 (GRCh37)
Canonical SPDI:: NC_000004.12:3583817:GA:
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.0031/14 (ALFA)
-=0.0029/13 (Estonian)
HGVS:: NC_000004.12:g.3583818_3583819del, NC_000004.11:g.3585545_3585546del

Select item 14910394518.

rs1491039451 has merged into rs34752358 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 4:3580480 (GRCh38)
4:3582207 (GRCh37)
Canonical SPDI:: NC_000004.12:3580478:TTT:T
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.002613/31 (ALFA)
-=0.000444/45 (GnomAD)
-=0.000609/10 (TOMMO)
HGVS:: NC_000004.12:g.3580480_3580481del, NC_000004.11:g.3582207_3582208del

Select item 14909610929.

rs1490961092 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>C
Chromosome:: no mapping
Canonical SPDI:

Select item 149093584910.

rs1490935849 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 4:3584518 (GRCh38)
4:3586245 (GRCh37)
Canonical SPDI:: NC_000004.12:3584517:T:G
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.3584518T>G, NC_000004.11:g.3586245T>G

Select item 149089816311.

rs1490898163 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 4:3585811 (GRCh38)
4:3587538 (GRCh37)
Canonical SPDI:: NC_000004.12:3585810:G:A,NC_000004.12:3585810:G:T
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.3585811G>A, NC_000004.12:g.3585811G>T, NC_000004.11:g.3587538G>A, NC_000004.11:g.3587538G>T

Select item 149074237812.

rs1490742378 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:3578882 (GRCh38)
4:3580609 (GRCh37)
Canonical SPDI:: NC_000004.12:3578881:C:T
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.3578882C>T, NC_000004.11:g.3580609C>T

Select item 149069642013.

rs1490696420 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 4:3579822 (GRCh38)
4:3581549 (GRCh37)
Canonical SPDI:: NC_000004.12:3579821:A:T
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.3579822A>T, NC_000004.11:g.3581549A>T

Select item 149050007814.

rs1490500078 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:3586095 (GRCh38)
4:3587822 (GRCh37)
Canonical SPDI:: NC_000004.12:3586094:T:C
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.3586095T>C, NC_000004.11:g.3587822T>C

Select item 149044600315.

rs1490446003 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>A
Chromosome:: no mapping
Canonical SPDI:

Select item 149040851416.

rs1490408514 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:3586145 (GRCh38)
4:3587872 (GRCh37)
Canonical SPDI:: NC_000004.12:3586144:G:A
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.3586145G>A, NC_000004.11:g.3587872G>A

Select item 149026525917.

rs1490265259 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 149025315118.

rs1490253151 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:3579301 (GRCh38)
4:3581028 (GRCh37)
Canonical SPDI:: NC_000004.12:3579300:A:G
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.3579301A>G, NC_000004.11:g.3581028A>G

Select item 149013717819.

rs1490137178 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 4:3585739 (GRCh38)
4:3587466 (GRCh37)
Canonical SPDI:: NC_000004.12:3585738:T:G
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.3585739T>G, NC_000004.11:g.3587466T>G

Select item 148995196720.

rs1489951967 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:3585505 (GRCh38)
4:3587232 (GRCh37)
Canonical SPDI:: NC_000004.12:3585504:T:C
Gene:: LINC00955 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (KOREAN)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.3585505T>C, NC_000004.11:g.3587232T>C

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