SNP Links for Gene (Select 285857) - SNP

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Links from Gene

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Select item 14909304781.

rs1490930478 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:43854125 (GRCh38)
6:43821862 (GRCh37)
Canonical SPDI:: NC_000006.12:43854124:T:C
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.43854125T>C, NC_000006.11:g.43821862T>C

Select item 14906178152.

rs1490617815 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:43844971 (GRCh38)
6:43812708 (GRCh37)
Canonical SPDI:: NC_000006.12:43844970:C:T
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
HGVS:: NC_000006.12:g.43844971C>T, NC_000006.11:g.43812708C>T, NR_149142.1:n.1290G>A

Select item 14905614273.

rs1490561427 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 6:43846039 (GRCh38)
6:43813776 (GRCh37)
Canonical SPDI:: NC_000006.12:43846038:G:A,NC_000006.12:43846038:G:T
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.43846039G>A, NC_000006.12:g.43846039G>T, NC_000006.11:g.43813776G>A, NC_000006.11:g.43813776G>T

Select item 14903222454.

rs1490322245 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGGAAGAGACAGAGAGATAGAGACAGAGA>- [Show Flanks]
Chromosome:: 6:43844471 (GRCh38)
6:43812208 (GRCh37)
Canonical SPDI:: NC_000006.12:43844458:TAGAGACAGAGAGAGGAAGAGACAGAGAGATAGAGACAGAGA:TAGAGACAGAGA
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAGAGACAGAGA=0.000084/1 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000026/7 (TOPMED)
HGVS:: NC_000006.12:g.43844471_43844500del, NC_000006.11:g.43812208_43812237del

Select item 14902186685.

rs1490218668 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:43852563 (GRCh38)
6:43820300 (GRCh37)
Canonical SPDI:: NC_000006.12:43852562:T:C
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.43852563T>C, NC_000006.11:g.43820300T>C

Select item 14902029866.

rs1490202986 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:43851645 (GRCh38)
6:43819382 (GRCh37)
Canonical SPDI:: NC_000006.12:43851644:G:A
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.43851645G>A, NC_000006.11:g.43819382G>A

Select item 14900517717.

rs1490051771 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:43846767 (GRCh38)
6:43814504 (GRCh37)
Canonical SPDI:: NC_000006.12:43846766:G:A
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.43846767G>A, NC_000006.11:g.43814504G>A

Select item 14898889428.

rs1489888942 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 6:43845733 (GRCh38)
6:43813470 (GRCh37)
Canonical SPDI:: NC_000006.12:43845732:G:C,NC_000006.12:43845732:G:T
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.0002/1 (ALFA)
C=0.0002/1 (Estonian)
HGVS:: NC_000006.12:g.43845733G>C, NC_000006.12:g.43845733G>T, NC_000006.11:g.43813470G>C, NC_000006.11:g.43813470G>T, NR_149142.1:n.528C>G, NR_149142.1:n.528C>A

Select item 14889673409.

rs1488967340 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 6:43848495 (GRCh38)
6:43816232 (GRCh37)
Canonical SPDI:: NC_000006.12:43848494:C:A,NC_000006.12:43848494:C:T
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.43848495C>A, NC_000006.12:g.43848495C>T, NC_000006.11:g.43816232C>A, NC_000006.11:g.43816232C>T

Select item 148871337910.

rs1488713379 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:43849413 (GRCh38)
6:43817150 (GRCh37)
Canonical SPDI:: NC_000006.12:43849412:C:T
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000026/7 (TOPMED)
T=0.000043/6 (GnomAD)
HGVS:: NC_000006.12:g.43849413C>T, NC_000006.11:g.43817150C>T

Select item 148792624211.

rs1487926242 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 6:43845589 (GRCh38)
6:43813326 (GRCh37)
Canonical SPDI:: NC_000006.12:43845588:C:A,NC_000006.12:43845588:C:T
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.43845589C>A, NC_000006.12:g.43845589C>T, NC_000006.11:g.43813326C>A, NC_000006.11:g.43813326C>T, NR_149142.1:n.672G>T, NR_149142.1:n.672G>A

Select item 148774205412.

rs1487742054 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:43854194 (GRCh38)
6:43821931 (GRCh37)
Canonical SPDI:: NC_000006.12:43854193:A:G
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.43854194A>G, NC_000006.11:g.43821931A>G

Select item 148738945013.

rs1487389450 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:43853747 (GRCh38)
6:43821484 (GRCh37)
Canonical SPDI:: NC_000006.12:43853746:G:T
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.43853747G>T, NC_000006.11:g.43821484G>T

Select item 148669148614.

rs1486691486 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 6:43849945 (GRCh38)
6:43817682 (GRCh37)
Canonical SPDI:: NC_000006.12:43849944:C:A,NC_000006.12:43849944:C:T
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000006.12:g.43849945C>A, NC_000006.12:g.43849945C>T, NC_000006.11:g.43817682C>A, NC_000006.11:g.43817682C>T

Select item 148612859415.

rs1486128594 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:43849104 (GRCh38)
6:43816841 (GRCh37)
Canonical SPDI:: NC_000006.12:43849103:C:A
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.43849104C>A, NC_000006.11:g.43816841C>A

Select item 148594193716.

rs1485941937 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:43853299 (GRCh38)
6:43821036 (GRCh37)
Canonical SPDI:: NC_000006.12:43853298:A:C
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
HGVS:: NC_000006.12:g.43853299A>C, NC_000006.11:g.43821036A>C

Select item 148571283217.

rs1485712832 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:43849433 (GRCh38)
6:43817170 (GRCh37)
Canonical SPDI:: NC_000006.12:43849432:T:C
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.43849433T>C, NC_000006.11:g.43817170T>C

Select item 148554448918.

rs1485544489 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:43845978 (GRCh38)
6:43813715 (GRCh37)
Canonical SPDI:: NC_000006.12:43845977:G:A
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000054/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
A=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.43845978G>A, NC_000006.11:g.43813715G>A

Select item 148541570619.

rs1485415706 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:43852133 (GRCh38)
6:43819870 (GRCh37)
Canonical SPDI:: NC_000006.12:43852132:G:A
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.43852133G>A, NC_000006.11:g.43819870G>A

Select item 148471273520.

rs1484712735 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 6:43848998 (GRCh38)
6:43816735 (GRCh37)
Canonical SPDI:: NC_000006.12:43848997:T:C,NC_000006.12:43848997:T:G
Gene:: POLR1C (Varview), LINC02537 (Varview), LOC105375070 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.43848998T>C, NC_000006.12:g.43848998T>G, NC_000006.11:g.43816735T>C, NC_000006.11:g.43816735T>G