SNP Links for Gene (Select 285972) - SNP

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Select item 14915616701.

rs1491561670 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 7:150436371 (GRCh38)
7:150133459 (GRCh37)
Canonical SPDI:: NC_000007.14:150436370:TA:
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000034/9 (TOPMED)
-=0.000043/6 (GnomAD)
HGVS:: NC_000007.14:g.150436371_150436372del, NC_000007.13:g.150133459_150133460del

Select item 14909646872.

rs1490964687 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:150441465 (GRCh38)
7:150138553 (GRCh37)
Canonical SPDI:: NC_000007.14:150441464:T:C
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.150441465T>C, NC_000007.13:g.150138553T>C

Select item 14908042443.

rs1490804244 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150448564 (GRCh38)
7:150145652 (GRCh37)
Canonical SPDI:: NC_000007.14:150448563:C:T
Gene:: LINC00996 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000054/1 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
T=0.000223/1 (Estonian)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000007.14:g.150448564C>T, NC_000007.13:g.150145652C>T

Select item 14907047354.

rs1490704735 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:150434517 (GRCh38)
7:150131605 (GRCh37)
Canonical SPDI:: NC_000007.14:150434516:G:A
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.150434517G>A, NC_000007.13:g.150131605G>A

Select item 14902257725.

rs1490225772 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:150435118 (GRCh38)
7:150132206 (GRCh37)
Canonical SPDI:: NC_000007.14:150435117:G:A
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150435118G>A, NC_000007.13:g.150132206G>A

Select item 14901909596.

rs1490190959 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 7:150433146 (GRCh38)
7:150130234 (GRCh37)
Canonical SPDI:: NC_000007.14:150433145:G:C,NC_000007.14:150433145:G:T
Gene:: LINC00996 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.150433146G>C, NC_000007.14:g.150433146G>T, NC_000007.13:g.150130234G>C, NC_000007.13:g.150130234G>T

Select item 14899341417.

rs1489934141 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:150447506 (GRCh38)
7:150144594 (GRCh37)
Canonical SPDI:: NC_000007.14:150447505:T:G
Gene:: LINC00996 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000026/7 (TOPMED)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000007.14:g.150447506T>G, NC_000007.13:g.150144594T>G, NR_034033.1:n.1409T>G

Select item 14898382088.

rs1489838208 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:150442030 (GRCh38)
7:150139118 (GRCh37)
Canonical SPDI:: NC_000007.14:150442029:C:A
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00016/1 (1000Genomes)
HGVS:: NC_000007.14:g.150442030C>A, NC_000007.13:g.150139118C>A

Select item 14895823569.

rs1489582356 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150443304 (GRCh38)
7:150140392 (GRCh37)
Canonical SPDI:: NC_000007.14:150443303:C:T
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.150443304C>T, NC_000007.13:g.150140392C>T

Select item 148934232510.

rs1489342325 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:150432596 (GRCh38)
7:150129684 (GRCh37)
Canonical SPDI:: NC_000007.14:150432595:G:A,NC_000007.14:150432595:G:C
Gene:: LINC00996 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0./0 (Korea1K)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150432596G>A, NC_000007.14:g.150432596G>C, NC_000007.13:g.150129684G>A, NC_000007.13:g.150129684G>C

Select item 148913475611.

rs1489134756 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:150435592 (GRCh38)
7:150132680 (GRCh37)
Canonical SPDI:: NC_000007.14:150435591:C:A
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.150435592C>A, NC_000007.13:g.150132680C>A

Select item 148876475712.

rs1488764757 [Homo sapiens]

Variant type:: SNV:
Alleles:: GAATA>-
Chromosome:: no mapping
Canonical SPDI:

Select item 148873615813.

rs1488736158 [Homo sapiens]

Variant type:: INS
Alleles:: ->AAT [Show Flanks]
Chromosome:: 7:150441149 (GRCh38)
7:150138238 (GRCh37)
Canonical SPDI:: NC_000007.14:150441149::AAT
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAT=0.0002/1 (ALFA)
AAT=0.0002/1 (Estonian)
HGVS:: NC_000007.14:g.150441149_150441150insAAT, NC_000007.13:g.150138237_150138238insAAT

Select item 148870356914.

rs1488703569 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150436077 (GRCh38)
7:150133165 (GRCh37)
Canonical SPDI:: NC_000007.14:150436076:C:T
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.150436077C>T, NC_000007.13:g.150133165C>T

Select item 148833592115.

rs1488335921 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:150437278 (GRCh38)
7:150134366 (GRCh37)
Canonical SPDI:: NC_000007.14:150437277:A:G
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000022/3 (GnomAD)
HGVS:: NC_000007.14:g.150437278A>G, NC_000007.13:g.150134366A>G

Select item 148810723316.

rs1488107233 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:150445301 (GRCh38)
7:150142389 (GRCh37)
Canonical SPDI:: NC_000007.14:150445300:G:A
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150445301G>A, NC_000007.13:g.150142389G>A

Select item 148788418017.

rs1487884180 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:150440925 (GRCh38)
7:150138013 (GRCh37)
Canonical SPDI:: NC_000007.14:150440924:C:A,NC_000007.14:150440924:C:T
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
T=0.00007/1 (TOMMO)
HGVS:: NC_000007.14:g.150440925C>A, NC_000007.14:g.150440925C>T, NC_000007.13:g.150138013C>A, NC_000007.13:g.150138013C>T

Select item 148648393118.

rs1486483931 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:150448439 (GRCh38)
7:150145527 (GRCh37)
Canonical SPDI:: NC_000007.14:150448438:C:T
Gene:: LINC00996 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150448439C>T, NC_000007.13:g.150145527C>T

Select item 148641280219.

rs1486412802 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:150445583 (GRCh38)
7:150142671 (GRCh37)
Canonical SPDI:: NC_000007.14:150445582:T:G
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150445583T>G, NC_000007.13:g.150142671T>G

Select item 148634989920.

rs1486349899 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:150436780 (GRCh38)
7:150133868 (GRCh37)
Canonical SPDI:: NC_000007.14:150436779:C:A,NC_000007.14:150436779:C:T
Gene:: LINC00996 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.150436780C>A, NC_000007.14:g.150436780C>T, NC_000007.13:g.150133868C>A, NC_000007.13:g.150133868C>T

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