SNP Links for Gene (Select 29109) - SNP

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Select item 14909461791.

rs1490946179 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:67236745 (GRCh38)
16:67270648 (GRCh37)
Canonical SPDI:: NC_000016.10:67236744:G:A
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.67236745G>A, NC_000016.9:g.67270648G>A, NG_029672.1:g.15778C>T

Select item 14908991022.

rs1490899102 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:67236463 (GRCh38)
16:67270366 (GRCh37)
Canonical SPDI:: NC_000016.10:67236462:T:C
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.67236463T>C, NC_000016.9:g.67270366T>C, NG_029672.1:g.16060A>G

Select item 14908718183.

rs1490871818 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:67237221 (GRCh38)
16:67271124 (GRCh37)
Canonical SPDI:: NC_000016.10:67237220:G:C
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000016/4 (GnomAD_exomes)
HGVS:: NC_000016.10:g.67237221G>C, NC_000016.9:g.67271124G>C, NG_029672.1:g.15302C>G

Select item 14904078294.

rs1490407829 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:67246548 (GRCh38)
16:67280451 (GRCh37)
Canonical SPDI:: NC_000016.10:67246547:C:A,NC_000016.10:67246547:C:T
Gene:: FHOD1 (Varview)
Functional Consequence:: upstream_transcript_variant,5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000016.10:g.67246548C>A, NC_000016.10:g.67246548C>T, NC_000016.9:g.67280451C>A, NC_000016.9:g.67280451C>T, NG_029672.1:g.5975G>T, NG_029672.1:g.5975G>A, XM_011523043.3:c.-110G>T, XM_011523043.3:c.-110G>A, XM_011523043.2:c.-110G>T, XM_011523043.2:c.-110G>A, XM_011523043.1:c.-110G>T, XM_011523043.1:c.-110G>A, XM_047434002.1:c.-931G>T, XM_047434002.1:c.-931G>A, XM_047433999.1:c.-110G>T, XM_047433999.1:c.-110G>A

Select item 14902370035.

rs1490237003 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:67241987 (GRCh38)
16:67275890 (GRCh37)
Canonical SPDI:: NC_000016.10:67241986:G:A,NC_000016.10:67241986:G:T
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.001296/24 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.67241987G>A, NC_000016.10:g.67241987G>T, NC_000016.9:g.67275890G>A, NC_000016.9:g.67275890G>T, NG_029672.1:g.10536C>T, NG_029672.1:g.10536C>A

Select item 14902013266.

rs1490201326 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:67235501 (GRCh38)
16:67269404 (GRCh37)
Canonical SPDI:: NC_000016.10:67235500:G:A,NC_000016.10:67235500:G:T
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000015/2 (GnomAD)
HGVS:: NC_000016.10:g.67235501G>A, NC_000016.10:g.67235501G>T, NC_000016.9:g.67269404G>A, NC_000016.9:g.67269404G>T, NG_029672.1:g.17022C>T, NG_029672.1:g.17022C>A

Select item 14901192387.

rs1490119238 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:67244619 (GRCh38)
16:67278522 (GRCh37)
Canonical SPDI:: NC_000016.10:67244618:G:C
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000016.10:g.67244619G>C, NC_000016.9:g.67278522G>C, NG_029672.1:g.7904C>G

Select item 14900829428.

rs1490082942 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:67234355 (GRCh38)
16:67268258 (GRCh37)
Canonical SPDI:: NC_000016.10:67234354:A:C
Gene:: FHOD1 (Varview)
Functional Consequence:: splice_donor_variant
HGVS:: NC_000016.10:g.67234355A>C, NC_000016.9:g.67268258A>C, NG_029672.1:g.18168T>G

Select item 14899340019.

rs1489934001 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:67245042 (GRCh38)
16:67278945 (GRCh37)
Canonical SPDI:: NC_000016.10:67245041:C:A,NC_000016.10:67245041:C:T
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.67245042C>A, NC_000016.10:g.67245042C>T, NC_000016.9:g.67278945C>A, NC_000016.9:g.67278945C>T, NG_029672.1:g.7481G>T, NG_029672.1:g.7481G>A

Select item 148991972210.

rs1489919722 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:67246170 (GRCh38)
16:67280073 (GRCh37)
Canonical SPDI:: NC_000016.10:67246169:G:A
Gene:: FHOD1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.67246170G>A, NC_000016.9:g.67280073G>A, NG_029672.1:g.6353C>T, XM_047434002.1:c.-553C>T

Select item 148991622111.

rs1489916221 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:67241413 (GRCh38)
16:67275316 (GRCh37)
Canonical SPDI:: NC_000016.10:67241412:C:G,NC_000016.10:67241412:C:T
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000156/1 (1000Genomes)
T=0.000546/1 (Korea1K)
T=0.001097/18 (TOMMO)
HGVS:: NC_000016.10:g.67241413C>G, NC_000016.10:g.67241413C>T, NC_000016.9:g.67275316C>G, NC_000016.9:g.67275316C>T, NG_029672.1:g.11110G>C, NG_029672.1:g.11110G>A

Select item 148973697312.

rs1489736973 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:67232005 (GRCh38)
16:67265908 (GRCh37)
Canonical SPDI:: NC_000016.10:67232004:C:T
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000016.10:g.67232005C>T, NC_000016.9:g.67265908C>T, NG_029672.1:g.20518G>A

Select item 148954748013.

rs1489547480 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 16:67242908 (GRCh38)
16:67276811 (GRCh37)
Canonical SPDI:: NC_000016.10:67242906:AGA:A
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.67242908_67242909del, NC_000016.9:g.67276811_67276812del, NG_029672.1:g.9615_9616del

Select item 148952598714.

rs1489525987 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:67247909 (GRCh38)
16:67281812 (GRCh37)
Canonical SPDI:: NC_000016.10:67247908:C:A,NC_000016.10:67247908:C:T
Gene:: SLC9A5 (Varview), FHOD1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.67247909C>A, NC_000016.10:g.67247909C>T, NC_000016.9:g.67281812C>A, NC_000016.9:g.67281812C>T, NG_029672.1:g.4614G>T, NG_029672.1:g.4614G>A

Select item 148951629315.

rs1489516293 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:67245614 (GRCh38)
16:67279517 (GRCh37)
Canonical SPDI:: NC_000016.10:67245613:G:A
Gene:: FHOD1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000054/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000016.10:g.67245614G>A, NC_000016.9:g.67279517G>A, NG_029672.1:g.6909C>T, XM_047434002.1:c.-93C>T, XM_047434001.1:c.-93C>T

Select item 148933149716.

rs1489331497 has merged into rs940547381 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>-,CC [Show Flanks]
Chromosome:: 16:67244062 (GRCh38)
16:67277965 (GRCh37)
Canonical SPDI:: NC_000016.10:67244061:CCCC:CCC,NC_000016.10:67244061:CCCC:CCCCC
Gene:: FHOD1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCC=0./0 (ALFA)
-=0./0 (GnomAD)
HGVS:: NC_000016.10:g.67244065del, NC_000016.10:g.67244065dup, NC_000016.9:g.67277968del, NC_000016.9:g.67277968dup, NG_029672.1:g.8461del, NG_029672.1:g.8461dup

Select item 148924343617.

rs1489243436 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:67234240 (GRCh38)
16:67268143 (GRCh37)
Canonical SPDI:: NC_000016.10:67234239:T:C
Gene:: FHOD1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000066/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000016.10:g.67234240T>C, NC_000016.9:g.67268143T>C, NG_029672.1:g.18283A>G, NM_013241.3:c.1463A>G, NM_013241.2:c.1463A>G, NM_001318202.2:c.1541A>G, NM_001318202.1:c.1541A>G, XM_011523043.3:c.1511A>G, XM_011523043.2:c.1511A>G, XM_011523043.1:c.1511A>G, XM_011523044.2:c.1541A>G, XM_011523044.1:c.1541A>G, XM_047434002.1:c.1184A>G, XM_047433999.1:c.1433A>G, XM_047434001.1:c.1184A>G, XM_047434000.1:c.1463A>G, XM_047434003.1:c.902A>G, XM_047434004.1:c.1541A>G, XM_047434005.1:c.1541A>G, NP_037373.2:p.Glu488Gly, NP_001305131.1:p.Glu514Gly, XP_011521345.1:p.Glu504Gly, XP_011521346.1:p.Glu514Gly, XP_047289958.1:p.Glu395Gly, XP_047289955.1:p.Glu478Gly, XP_047289957.1:p.Glu395Gly, XP_047289956.1:p.Glu488Gly, XP_047289959.1:p.Glu301Gly, XP_047289960.1:p.Glu514Gly, XP_047289961.1:p.Glu514Gly

Select item 148915145018.

rs1489151450 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:67235512 (GRCh38)
16:67269415 (GRCh37)
Canonical SPDI:: NC_000016.10:67235511:C:T
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000023/3 (GnomAD)
T=0.000038/10 (TOPMED)
HGVS:: NC_000016.10:g.67235512C>T, NC_000016.9:g.67269415C>T, NG_029672.1:g.17011G>A

Select item 148910207219.

rs1489102072 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:67237531 (GRCh38)
16:67271434 (GRCh37)
Canonical SPDI:: NC_000016.10:67237530:C:T
Gene:: FHOD1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by cluster
MAF:: T=0.000004/1 (GnomAD_exomes)
T=0.000071/1 (TOMMO)
HGVS:: NC_000016.10:g.67237531C>T, NC_000016.9:g.67271434C>T, NG_029672.1:g.14992G>A, NM_013241.3:c.793G>A, NM_013241.2:c.793G>A, NM_001318202.2:c.793G>A, NM_001318202.1:c.793G>A, XM_011523043.3:c.763G>A, XM_011523043.2:c.763G>A, XM_011523043.1:c.763G>A, XM_011523044.2:c.793G>A, XM_011523044.1:c.793G>A, XM_047434002.1:c.514G>A, XM_047433999.1:c.763G>A, XM_047434001.1:c.514G>A, XM_047434000.1:c.793G>A, XM_047434003.1:c.232G>A, XM_047434004.1:c.793G>A, XM_047434005.1:c.793G>A, NP_037373.2:p.Glu265Lys, NP_001305131.1:p.Glu265Lys, XP_011521345.1:p.Glu255Lys, XP_011521346.1:p.Glu265Lys, XP_047289958.1:p.Glu172Lys, XP_047289955.1:p.Glu255Lys, XP_047289957.1:p.Glu172Lys, XP_047289956.1:p.Glu265Lys, XP_047289959.1:p.Glu78Lys, XP_047289960.1:p.Glu265Lys, XP_047289961.1:p.Glu265Lys

Select item 148885345620.

rs1488853456 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:67235428 (GRCh38)
16:67269331 (GRCh37)
Canonical SPDI:: NC_000016.10:67235427:G:A
Gene:: FHOD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000016.10:g.67235428G>A, NC_000016.9:g.67269331G>A, NG_029672.1:g.17095C>T