SNP Links for Gene (Select 2921) - SNP

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Select item 14903075591.

rs1490307559 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:74038853 (GRCh38)
4:74904570 (GRCh37)
Canonical SPDI:: NC_000004.12:74038852:C:T
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.74038853C>T, NC_000004.11:g.74904570C>T

Select item 14898106992.

rs1489810699 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:74038528 (GRCh38)
4:74904245 (GRCh37)
Canonical SPDI:: NC_000004.12:74038527:G:A
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: synonymous_variant,upstream_transcript_variant,coding_sequence_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.74038528G>A, NC_000004.11:g.74904245G>A, NM_002090.3:c.84C>T, NM_002090.2:c.84C>T

Select item 14895636923.

rs1489563692 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:74036247 (GRCh38)
4:74901964 (GRCh37)
Canonical SPDI:: NC_000004.12:74036246:G:A
Gene:: CXCL3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
G=0.5/2 (SGDP_PRJ)
HGVS:: NC_000004.12:g.74036247G>A, NC_000004.11:g.74901964G>A

Select item 14894598194.

rs1489459819 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:74038636 (GRCh38)
4:74904353 (GRCh37)
Canonical SPDI:: NC_000004.12:74038635:G:A
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant
HGVS:: NC_000004.12:g.74038636G>A, NC_000004.11:g.74904353G>A, NM_002090.3:c.-25C>T, NM_002090.2:c.-25C>T

Select item 14890636295.

rs1489063629 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:74036142 (GRCh38)
4:74901859 (GRCh37)
Canonical SPDI:: NC_000004.12:74036141:G:A
Gene:: CXCL3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000186/1 (GnomAD)
HGVS:: NC_000004.12:g.74036142G>A, NC_000004.11:g.74901859G>A

Select item 14882271136.

rs1488227113 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:74037157 (GRCh38)
4:74902874 (GRCh37)
Canonical SPDI:: NC_000004.12:74037156:C:G
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.74037157C>G, NC_000004.11:g.74902874C>G, NM_002090.3:c.*105G>C, NM_002090.2:c.*105G>C

Select item 14873744827.

rs1487374482 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 4:74037524 (GRCh38)
4:74903241 (GRCh37)
Canonical SPDI:: NC_000004.12:74037523:G:T
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000004.12:g.74037524G>T, NC_000004.11:g.74903241G>T

Select item 14861812858.

rs1486181285 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:74039177 (GRCh38)
4:74904894 (GRCh37)
Canonical SPDI:: NC_000004.12:74039176:A:G
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000036/5 (GnomAD)
G=0.000042/11 (TOPMED)
G=0.000342/1 (KOREAN)
HGVS:: NC_000004.12:g.74039177A>G, NC_000004.11:g.74904894A>G, XR_938875.3:n.233A>G, XR_938875.2:n.330A>G, XR_938875.1:n.330A>G

Select item 14849246019.

rs1484924601 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:74036262 (GRCh38)
4:74901979 (GRCh37)
Canonical SPDI:: NC_000004.12:74036261:A:G
Gene:: CXCL3 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.74036262A>G, NC_000004.11:g.74901979A>G

Select item 148474173110.

rs1484741731 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:74038039 (GRCh38)
4:74903756 (GRCh37)
Canonical SPDI:: NC_000004.12:74038038:A:G
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000026/7 (TOPMED)
HGVS:: NC_000004.12:g.74038039A>G, NC_000004.11:g.74903756A>G

Select item 148414759611.

rs1484147596 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:74038623 (GRCh38)
4:74904340 (GRCh37)
Canonical SPDI:: NC_000004.12:74038622:G:A
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.74038623G>A, NC_000004.11:g.74904340G>A, NM_002090.3:c.-12C>T, NM_002090.2:c.-12C>T

Select item 148395325712.

rs1483953257 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:74039304 (GRCh38)
4:74905021 (GRCh37)
Canonical SPDI:: NC_000004.12:74039303:A:G
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.74039304A>G, NC_000004.11:g.74905021A>G, XR_938875.3:n.360A>G, XR_938875.2:n.457A>G, XR_938875.1:n.457A>G

Select item 148337627613.

rs1483376276 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:74040186 (GRCh38)
4:74905903 (GRCh37)
Canonical SPDI:: NC_000004.12:74040185:G:A
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000004.12:g.74040186G>A, NC_000004.11:g.74905903G>A, XR_938875.3:n.1242G>A, XR_938875.2:n.1339G>A, XR_938875.1:n.1339G>A

Select item 148316423014.

rs1483164230 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 4:74039883 (GRCh38)
4:74905600 (GRCh37)
Canonical SPDI:: NC_000004.12:74039882:A:C
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.74039883A>C, NC_000004.11:g.74905600A>C, XR_938875.3:n.939A>C, XR_938875.2:n.1036A>C, XR_938875.1:n.1036A>C

Select item 148035222715.

rs1480352227 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 4:74039971 (GRCh38)
4:74905688 (GRCh37)
Canonical SPDI:: NC_000004.12:74039970:T:A
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.74039971T>A, NC_000004.11:g.74905688T>A, XR_938875.3:n.1027T>A, XR_938875.2:n.1124T>A, XR_938875.1:n.1124T>A

Select item 147906110516.

rs1479061105 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 4:74038572 (GRCh38)
4:74904289 (GRCh37)
Canonical SPDI:: NC_000004.12:74038571:GGGG:GGG
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: coding_sequence_variant,upstream_transcript_variant,2KB_upstream_variant,frameshift_variant
Validated:: by cluster
HGVS:: NC_000004.12:g.74038575del, NC_000004.11:g.74904292del, NM_002090.3:c.40del, NM_002090.2:c.40del, NP_002081.2:p.Arg14fs

Select item 147900089517.

rs1479000895 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:74039559 (GRCh38)
4:74905276 (GRCh37)
Canonical SPDI:: NC_000004.12:74039558:C:T
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.74039559C>T, NC_000004.11:g.74905276C>T, XR_938875.3:n.615C>T, XR_938875.2:n.712C>T, XR_938875.1:n.712C>T

Select item 147802115818.

rs1478021158 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:74036838 (GRCh38)
4:74902555 (GRCh37)
Canonical SPDI:: NC_000004.12:74036837:T:C
Gene:: CXCL3 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.74036838T>C, NC_000004.11:g.74902555T>C, NM_002090.3:c.*424A>G, NM_002090.2:c.*424A>G

Select item 147800442219.

rs1478004422 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 4:74038174 (GRCh38)
4:74903891 (GRCh37)
Canonical SPDI:: NC_000004.12:74038173:G:T
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.74038174G>T, NC_000004.11:g.74903891G>T, NM_002090.3:c.227C>A, NM_002090.2:c.227C>A, NP_002081.2:p.Ala76Asp

Select item 147736416020.

rs1477364160 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 4:74037784 (GRCh38)
4:74903501 (GRCh37)
Canonical SPDI:: NC_000004.12:74037783:G:A,NC_000004.12:74037783:G:C
Gene:: CXCL3 (Varview), LOC105377275 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.74037784G>A, NC_000004.12:g.74037784G>C, NC_000004.11:g.74903501G>A, NC_000004.11:g.74903501G>C

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