SNP Links for Gene (Select 2953) - SNP

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Select item 14894409241.

rs1489440924 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:23980159 (GRCh38)
22:24322350 (GRCh37)
Canonical SPDI:: NC_000022.11:23980158:G:A
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000022.11:g.23980159G>A, NT_187633.1:g.216525G>A, NC_000022.10:g.24322350G>A, NM_000854.4:c.-39G>A, NM_000854.3:c.-39G>A, NR_126445.2:n.26G>A, NR_126445.1:n.132G>A, NR_126446.1:n.132G>A, NR_126442.1:n.132G>A, NM_001302670.1:c.-39G>A

Select item 14887735322.

rs1488773532 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:23981096 (GRCh38)
22:24323287 (GRCh37)
Canonical SPDI:: NC_000022.11:23981095:C:T
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.23981096C>T, NT_187633.1:g.217462C>T, NC_000022.10:g.24323287C>T

Select item 14886684303.

rs1488668430 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:23984390 (GRCh38)
22:24326581 (GRCh37)
Canonical SPDI:: NC_000022.11:23984389:G:A
Gene:: GSTT2 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000022.11:g.23984390G>A, NT_187633.1:g.220756G>A, NC_000022.10:g.24326581G>A

Select item 14881238724.

rs1488123872 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:23981558 (GRCh38)
22:24323749 (GRCh37)
Canonical SPDI:: NC_000022.11:23981557:A:G
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000008/1 (GnomAD)
HGVS:: NC_000022.11:g.23981558A>G, NT_187633.1:g.217924A>G, NC_000022.10:g.24323749A>G

Select item 14873637425.

rs1487363742 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:23980331 (GRCh38)
22:24322522 (GRCh37)
Canonical SPDI:: NC_000022.11:23980330:G:A
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00026/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.23980331G>A, NT_187633.1:g.216697G>A, NC_000022.10:g.24322522G>A

Select item 14871399396.

rs1487139939 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 22:23981329 (GRCh38)
22:24323520 (GRCh37)
Canonical SPDI:: NC_000022.11:23981328:G:A,NC_000022.11:23981328:G:C,NC_000022.11:23981328:G:T
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.23981329G>A, NC_000022.11:g.23981329G>C, NC_000022.11:g.23981329G>T, NT_187633.1:g.217695G>A, NT_187633.1:g.217695G>C, NT_187633.1:g.217695G>T, NC_000022.10:g.24323520G>A, NC_000022.10:g.24323520G>C, NC_000022.10:g.24323520G>T

Select item 14869766247.

rs1486976624 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:23981303 (GRCh38)
22:24323494 (GRCh37)
Canonical SPDI:: NC_000022.11:23981302:A:G
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00017/2 (ALFA)
G=0.00034/12 (GnomAD)
G=0.00076/2 (KOREAN)
G=0.00094/6 (1000Genomes)
HGVS:: NC_000022.11:g.23981303A>G, NT_187633.1:g.217669A>G, NC_000022.10:g.24323494A>G

Select item 14865174818.

rs1486517481 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 22:23982301 (GRCh38)
22:24324492 (GRCh37)
Canonical SPDI:: NC_000022.11:23982300:C:G
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00109/7 (1000Genomes)
HGVS:: NC_000022.11:g.23982301C>G, NT_187633.1:g.218667C>G, NC_000022.10:g.24324492C>G

Select item 14864686509.

rs1486468650 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:23981255 (GRCh38)
22:24323446 (GRCh37)
Canonical SPDI:: NC_000022.11:23981254:G:A
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00016/1 (1000Genomes)
A=0.00026/4 (TOMMO)
A=0.00241/7 (KOREAN)
HGVS:: NC_000022.11:g.23981255G>A, NT_187633.1:g.217621G>A, NC_000022.10:g.24323446G>A

Select item 148644997210.

rs1486449972 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:23981817 (GRCh38)
22:24324008 (GRCh37)
Canonical SPDI:: NC_000022.11:23981816:G:A,NC_000022.11:23981816:G:C
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000022.11:g.23981817G>A, NC_000022.11:g.23981817G>C, NT_187633.1:g.218183G>A, NT_187633.1:g.218183G>C, NC_000022.10:g.24324008G>A, NC_000022.10:g.24324008G>C

Select item 148599247711.

rs1485992477 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:23980687 (GRCh38)
22:24322878 (GRCh37)
Canonical SPDI:: NC_000022.11:23980686:C:T
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00001/1 (GnomAD)
HGVS:: NC_000022.11:g.23980687C>T, NT_187633.1:g.217053C>T, NC_000022.10:g.24322878C>T

Select item 148570876312.

rs1485708763 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:23981173 (GRCh38)
22:24323364 (GRCh37)
Canonical SPDI:: NC_000022.11:23981172:G:A
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00007/3 (GnomAD)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000022.11:g.23981173G>A, NT_187633.1:g.217539G>A, NC_000022.10:g.24323364G>A

Select item 148485426213.

rs1484854262 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:23982209 (GRCh38)
22:24324400 (GRCh37)
Canonical SPDI:: NC_000022.11:23982208:G:T
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00002/2 (GnomAD)
HGVS:: NC_000022.11:g.23982209G>T, NT_187633.1:g.218575G>T, NC_000022.10:g.24324400G>T

Select item 148133189214.

rs1481331892 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:23982892 (GRCh38)
22:24325083 (GRCh37)
Canonical SPDI:: NC_000022.11:23982891:G:A
Gene:: GSTT2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.23982892G>A, NT_187633.1:g.219258G>A, NC_000022.10:g.24325083G>A, NM_000854.4:c.373G>A, NM_000854.3:c.373G>A, NR_126445.2:n.437G>A, NR_126445.1:n.543G>A, NR_126446.1:n.647G>A, NR_126442.1:n.577G>A, NM_001302670.1:c.373G>A

Select item 148003713115.

rs1480037131 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 22:23981310 (GRCh38)
22:24323501 (GRCh37)
Canonical SPDI:: NC_000022.11:23981309:G:A,NC_000022.11:23981309:G:C,NC_000022.11:23981309:G:T
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.00007/2 (TOMMO)
HGVS:: NC_000022.11:g.23981310G>A, NC_000022.11:g.23981310G>C, NC_000022.11:g.23981310G>T, NT_187633.1:g.217676G>A, NT_187633.1:g.217676G>C, NT_187633.1:g.217676G>T, NC_000022.10:g.24323501G>A, NC_000022.10:g.24323501G>C, NC_000022.10:g.24323501G>T

Select item 147902364116.

rs1479023641 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:23980459 (GRCh38)
22:24322650 (GRCh37)
Canonical SPDI:: NC_000022.11:23980458:C:T
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.23980459C>T, NT_187633.1:g.216825C>T, NC_000022.10:g.24322650C>T, NM_001397485.1:c.-73G>A

Select item 147851911317.

rs1478519113 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:23982290 (GRCh38)
22:24324481 (GRCh37)
Canonical SPDI:: NC_000022.11:23982289:C:T
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00202/24 (ALFA)
T=0.0022/211 (GnomAD)
T=0.00344/22 (1000Genomes)
HGVS:: NC_000022.11:g.23982290C>T, NT_187633.1:g.218656C>T, NC_000022.10:g.24324481C>T

Select item 147733957318.

rs1477339573 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:23981598 (GRCh38)
22:24323789 (GRCh37)
Canonical SPDI:: NC_000022.11:23981597:G:T
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.23981598G>T, NT_187633.1:g.217964G>T, NC_000022.10:g.24323789G>T

Select item 147663531819.

rs1476635318 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:23982760 (GRCh38)
22:24324951 (GRCh37)
Canonical SPDI:: NC_000022.11:23982759:T:C
Gene:: GSTT2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.23982760T>C, NT_187633.1:g.219126T>C, NC_000022.10:g.24324951T>C, NM_000854.4:c.333T>C, NM_000854.3:c.333T>C, NR_126445.2:n.397T>C, NR_126445.1:n.503T>C, NR_126446.1:n.607T>C, NR_126442.1:n.537T>C, NM_001302670.1:c.333T>C

Select item 147573090120.

rs1475730901 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 22:23981874 (GRCh38)
22:24324065 (GRCh37)
Canonical SPDI:: NC_000022.11:23981873:G:C,NC_000022.11:23981873:G:T
Gene:: DDT (Varview), GSTT2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.23981874G>C, NC_000022.11:g.23981874G>T, NT_187633.1:g.218240G>C, NT_187633.1:g.218240G>T, NC_000022.10:g.24324065G>C, NC_000022.10:g.24324065G>T

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