SNP Links for Gene (Select 29986) - SNP

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Select item 14900405281.

rs1490040528 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 14:21000779 (GRCh38)
14:21468938 (GRCh37)
Canonical SPDI:: NC_000014.9:21000778:G:C
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.21000779G>C, NC_000014.8:g.21468938G>C, NG_017065.1:g.6525G>C

Select item 14893064682.

rs1489306468 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:21000997 (GRCh38)
14:21469156 (GRCh37)
Canonical SPDI:: NC_000014.9:21000996:C:T
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: 2KB_upstream_variant,synonymous_variant,3_prime_UTR_variant,coding_sequence_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.0017/15 (ALFA)
HGVS:: NC_000014.9:g.21000997C>T, NC_000014.8:g.21469156C>T, NG_017065.1:g.6743C>T, NM_014579.4:c.348C>T, NM_014579.3:c.348C>T, NM_001256588.2:c.*85C>T, NM_001256588.1:c.*85C>T, NR_033419.1:n.535C>T

Select item 14890673653.

rs1489067365 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 14:20999881 (GRCh38)
14:21468040 (GRCh37)
Canonical SPDI:: NC_000014.9:20999880:A:C
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.20999881A>C, NC_000014.8:g.21468040A>C, NG_017065.1:g.5627A>C

Select item 14888786734.

rs1488878673 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 14:20999801 (GRCh38)
14:21467960 (GRCh37)
Canonical SPDI:: NC_000014.9:20999800:G:C
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000028/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.20999801G>C, NC_000014.8:g.21467960G>C, NG_017065.1:g.5547G>C, NM_014579.4:c.175G>C, NM_014579.3:c.175G>C, NM_001256588.2:c.175G>C, NM_001256588.1:c.175G>C, NR_033419.1:n.367G>C, NP_055394.2:p.Ala59Pro, NP_001243517.1:p.Ala59Pro

Select item 14884863595.

rs1488486359 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:21000432 (GRCh38)
14:21468591 (GRCh37)
Canonical SPDI:: NC_000014.9:21000431:G:A
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.21000432G>A, NC_000014.8:g.21468591G>A, NG_017065.1:g.6178G>A

Select item 14876827956.

rs1487682795 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:20997706 (GRCh38)
14:21465865 (GRCh37)
Canonical SPDI:: NC_000014.9:20997705:C:T
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000014.9:g.20997706C>T, NC_000014.8:g.21465865C>T, NG_017065.1:g.3452C>T, NR_110139.1:n.499G>A

Select item 14874043457.

rs1487404345 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 14:20998093 (GRCh38)
14:21466252 (GRCh37)
Canonical SPDI:: NC_000014.9:20998092:T:G
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.20998093T>G, NC_000014.8:g.21466252T>G, NG_017065.1:g.3839T>G

Select item 14868047908.

rs1486804790 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:20999036 (GRCh38)
14:21467195 (GRCh37)
Canonical SPDI:: NC_000014.9:20999035:A:G
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.20999036A>G, NC_000014.8:g.21467195A>G, NG_017065.1:g.4782A>G, NR_110139.1:n.128T>C

Select item 14860399029.

rs1486039902 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:20997568 (GRCh38)
14:21465727 (GRCh37)
Canonical SPDI:: NC_000014.9:20997567:C:T
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.20997568C>T, NC_000014.8:g.21465727C>T, NG_017065.1:g.3314C>T

Select item 148567842510.

rs1485678425 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:21001495 (GRCh38)
14:21469654 (GRCh37)
Canonical SPDI:: NC_000014.9:21001494:A:G
Gene:: SLC39A2 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant,3_prime_UTR_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.21001495A>G, NC_000014.8:g.21469654A>G, NG_017065.1:g.7241A>G, NM_014579.4:c.846A>G, NM_014579.3:c.846A>G, NM_001256588.2:c.*583A>G, NM_001256588.1:c.*583A>G, NR_033419.1:n.1033A>G

Select item 148476380511.

rs1484763805 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:21000256 (GRCh38)
14:21468415 (GRCh37)
Canonical SPDI:: NC_000014.9:21000255:G:A
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.21000256G>A, NC_000014.8:g.21468415G>A, NG_017065.1:g.6002G>A

Select item 148412947712.

rs1484129477 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 14:21000133 (GRCh38)
14:21468292 (GRCh37)
Canonical SPDI:: NC_000014.9:21000132:G:C
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: 2KB_upstream_variant,3_prime_UTR_variant,missense_variant,coding_sequence_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000014.9:g.21000133G>C, NC_000014.8:g.21468292G>C, NG_017065.1:g.5879G>C, NM_014579.4:c.264G>C, NM_014579.3:c.264G>C, NM_001256588.2:c.*1G>C, NM_001256588.1:c.*1G>C, NR_033419.1:n.451G>C, NP_055394.2:p.Glu88Asp

Select item 148403619713.

rs1484036197 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:20998834 (GRCh38)
14:21466993 (GRCh37)
Canonical SPDI:: NC_000014.9:20998833:C:T
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.20998834C>T, NC_000014.8:g.21466993C>T, NG_017065.1:g.4580C>T, NR_110139.1:n.330G>A

Select item 148121700714.

rs1481217007 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 14:20997984 (GRCh38)
14:21466143 (GRCh37)
Canonical SPDI:: NC_000014.9:20997983:A:T
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000014.9:g.20997984A>T, NC_000014.8:g.21466143A>T, NG_017065.1:g.3730A>T

Select item 148100147315.

rs1481001473 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:20999009 (GRCh38)
14:21467168 (GRCh37)
Canonical SPDI:: NC_000014.9:20999008:G:A
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000014.9:g.20999009G>A, NC_000014.8:g.21467168G>A, NG_017065.1:g.4755G>A, NR_110139.1:n.155C>T

Select item 148056651616.

rs1480566516 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:20998910 (GRCh38)
14:21467069 (GRCh37)
Canonical SPDI:: NC_000014.9:20998909:A:G
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000014.9:g.20998910A>G, NC_000014.8:g.21467069A>G, NG_017065.1:g.4656A>G, NR_110139.1:n.254T>C

Select item 148044151917.

rs1480441519 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 14:21001473 (GRCh38)
14:21469632 (GRCh37)
Canonical SPDI:: NC_000014.9:21001472:T:C,NC_000014.9:21001472:T:G
Gene:: SLC39A2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000014.9:g.21001473T>C, NC_000014.9:g.21001473T>G, NC_000014.8:g.21469632T>C, NC_000014.8:g.21469632T>G, NG_017065.1:g.7219T>C, NG_017065.1:g.7219T>G, NM_014579.4:c.824T>C, NM_014579.4:c.824T>G, NM_014579.3:c.824T>C, NM_014579.3:c.824T>G, NM_001256588.2:c.*561T>C, NM_001256588.2:c.*561T>G, NM_001256588.1:c.*561T>C, NM_001256588.1:c.*561T>G, NR_033419.1:n.1011T>C, NR_033419.1:n.1011T>G, NP_055394.2:p.Leu275Pro, NP_055394.2:p.Leu275Arg

Select item 147990938918.

rs1479909389 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 14:21000570 (GRCh38)
14:21468729 (GRCh37)
Canonical SPDI:: NC_000014.9:21000569:C:G
Gene:: SLC39A2 (Varview), LOC101929718 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.21000570C>G, NC_000014.8:g.21468729C>G, NG_017065.1:g.6316C>G

Select item 147950479619.

rs1479504796 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 14:21001574 (GRCh38)
14:21469733 (GRCh37)
Canonical SPDI:: NC_000014.9:21001573:G:A,NC_000014.9:21001573:G:C
Gene:: SLC39A2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,3_prime_UTR_variant
Validated:: by frequency,by cluster
MAF:: A=0.000005/1 (GnomAD_exomes)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.21001574G>A, NC_000014.9:g.21001574G>C, NC_000014.8:g.21469733G>A, NC_000014.8:g.21469733G>C, NG_017065.1:g.7320G>A, NG_017065.1:g.7320G>C, NM_014579.4:c.925G>A, NM_014579.4:c.925G>C, NM_014579.3:c.925G>A, NM_014579.3:c.925G>C, NM_001256588.2:c.*662G>A, NM_001256588.2:c.*662G>C, NM_001256588.1:c.*662G>A, NM_001256588.1:c.*662G>C, NR_033419.1:n.1112G>A, NR_033419.1:n.1112G>C, NP_055394.2:p.Ala309Thr, NP_055394.2:p.Ala309Pro

Select item 147859815520.

rs1478598155 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:21001205 (GRCh38)
14:21469364 (GRCh37)
Canonical SPDI:: NC_000014.9:21001204:C:T
Gene:: SLC39A2 (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained,3_prime_UTR_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.21001205C>T, NC_000014.8:g.21469364C>T, NG_017065.1:g.6951C>T, NM_014579.4:c.556C>T, NM_014579.3:c.556C>T, NM_001256588.2:c.*293C>T, NM_001256588.1:c.*293C>T, NR_033419.1:n.743C>T, NP_055394.2:p.Gln186Ter

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