SNP Links for Gene (Select 3175) - SNP

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Select item 14915059341.

rs1491505934 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 15:52771437 (GRCh38)
15:53063635 (GRCh37)
Canonical SPDI:: NC_000015.10:52771437:T:TT
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.00329/47 (GnomAD)
HGVS:: NC_000015.10:g.52771438dup, NC_000015.9:g.53063635dup

Select item 14913704522.

rs1491370452 has merged into rs1555416122 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:52777741 (GRCh38)
15:53069938 (GRCh37)
Canonical SPDI:: NC_000015.10:52777737:AAAAAAA:AAA,NC_000015.10:52777737:AAAAAAA:AAAA,NC_000015.10:52777737:AAAAAAA:AAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000015.10:52777737:AAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
HGVS:: NC_000015.10:g.52777741_52777744del, NC_000015.10:g.52777742_52777744del, NC_000015.10:g.52777743_52777744del, NC_000015.10:g.52777744del, NC_000015.10:g.52777744dup, NC_000015.10:g.52777743_52777744dup, NC_000015.10:g.52777742_52777744dup, NC_000015.10:g.52777741_52777744dup, NC_000015.10:g.52777740_52777744dup, NC_000015.10:g.52777739_52777744dup, NC_000015.10:g.52777738_52777744dup, NC_000015.10:g.52777744_52777745insAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAAAAAAAAAAA, NC_000015.10:g.52777744_52777745insAAAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.53069938_53069941del, NC_000015.9:g.53069939_53069941del, NC_000015.9:g.53069940_53069941del, NC_000015.9:g.53069941del, NC_000015.9:g.53069941dup, NC_000015.9:g.53069940_53069941dup, NC_000015.9:g.53069939_53069941dup, NC_000015.9:g.53069938_53069941dup, NC_000015.9:g.53069937_53069941dup, NC_000015.9:g.53069936_53069941dup, NC_000015.9:g.53069935_53069941dup, NC_000015.9:g.53069941_53069942insAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAAAAAAAAAAA, NC_000015.9:g.53069941_53069942insAAAAAAAAAAAAAAAAAAAAAAA

Select item 14913545093.

rs1491354509 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AT [Show Flanks]
Chromosome:: 15:52766236 (GRCh38)
15:53058434 (GRCh37)
Canonical SPDI:: NC_000015.10:52766236:T:TAT
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAT=0.0016/19 (ALFA)
TA=0.00461/338 (GnomAD)
HGVS:: NC_000015.10:g.52766237_52766238insAT, NC_000015.9:g.53058434_53058435insAT

Select item 14911418594.

rs1491141859 has merged into rs76480336 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT [Show Flanks]
Chromosome:: 15:52766247 (GRCh38)
15:53058444 (GRCh37)
Canonical SPDI:: NC_000015.10:52766235:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000015.10:52766235:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000015.10:52766235:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000015.10:52766235:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000015.10:52766235:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000015.10:52766235:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000015.10:52766235:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000015.10:52766235:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.11167/67 (NorthernSweden)
-=0.125/5 (GENOME_DK)
HGVS:: NC_000015.10:g.52766247_52766250del, NC_000015.10:g.52766248_52766250del, NC_000015.10:g.52766249_52766250del, NC_000015.10:g.52766250del, NC_000015.10:g.52766250dup, NC_000015.10:g.52766249_52766250dup, NC_000015.10:g.52766248_52766250dup, NC_000015.10:g.52766246_52766250dup, NC_000015.9:g.53058444_53058447del, NC_000015.9:g.53058445_53058447del, NC_000015.9:g.53058446_53058447del, NC_000015.9:g.53058447del, NC_000015.9:g.53058447dup, NC_000015.9:g.53058446_53058447dup, NC_000015.9:g.53058445_53058447dup, NC_000015.9:g.53058443_53058447dup

Select item 14909855865.

rs1490985586 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:52760105 (GRCh38)
15:53052302 (GRCh37)
Canonical SPDI:: NC_000015.10:52760104:A:G
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.52760105A>G, NC_000015.9:g.53052302A>G

Select item 14908573696.

rs1490857369 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:52758998 (GRCh38)
15:53051195 (GRCh37)
Canonical SPDI:: NC_000015.10:52758997:G:T
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.52758998G>T, NC_000015.9:g.53051195G>T

Select item 14907251017.

rs1490725101 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:52770686 (GRCh38)
15:53062883 (GRCh37)
Canonical SPDI:: NC_000015.10:52770685:A:G
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.52770686A>G, NC_000015.9:g.53062883A>G

Select item 14907135998.

rs1490713599 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>G
Chromosome:: no mapping
Canonical SPDI:

Select item 14906939109.

rs1490693910 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:52782635 (GRCh38)
15:53074832 (GRCh37)
Canonical SPDI:: NC_000015.10:52782634:T:C
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.52782635T>C, NC_000015.9:g.53074832T>C

Select item 149068898010.

rs1490688980 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:52770900 (GRCh38)
15:53063097 (GRCh37)
Canonical SPDI:: NC_000015.10:52770899:T:C
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000071/10 (GnomAD)
HGVS:: NC_000015.10:g.52770900T>C, NC_000015.9:g.53063097T>C

Select item 149049832911.

rs1490498329 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:52786200 (GRCh38)
15:53078397 (GRCh37)
Canonical SPDI:: NC_000015.10:52786199:A:G
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000342/1 (KOREAN)
HGVS:: NC_000015.10:g.52786200A>G, NC_000015.9:g.53078397A>G

Select item 149045009512.

rs1490450095 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:52775627 (GRCh38)
15:53067824 (GRCh37)
Canonical SPDI:: NC_000015.10:52775626:A:C
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.52775627A>C, NC_000015.9:g.53067824A>C

Select item 149036568813.

rs1490365688 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:52758521 (GRCh38)
15:53050718 (GRCh37)
Canonical SPDI:: NC_000015.10:52758520:G:A,NC_000015.10:52758520:G:T
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.52758521G>A, NC_000015.10:g.52758521G>T, NC_000015.9:g.53050718G>A, NC_000015.9:g.53050718G>T

Select item 149034890414.

rs1490348904 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:52790667 (GRCh38)
15:53082864 (GRCh37)
Canonical SPDI:: NC_000015.10:52790666:C:T
Gene:: ONECUT1 (Varview), LOC105370824 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.52790667C>T, NC_000015.9:g.53082864C>T, NG_075976.1:g.436C>T, XR_001751550.2:n.238C>T

Select item 149032302815.

rs1490323028 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:52790097 (GRCh38)
15:53082294 (GRCh37)
Canonical SPDI:: NC_000015.10:52790096:C:G,NC_000015.10:52790096:C:T
Gene:: ONECUT1 (Varview), LOC105370824 (Varview)
Functional Consequence:: 2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.52790097C>G, NC_000015.10:g.52790097C>T, NC_000015.9:g.53082294C>G, NC_000015.9:g.53082294C>T, NM_004498.4:c.-213G>C, NM_004498.4:c.-213G>A

Select item 149016610716.

rs1490166107 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:52784122 (GRCh38)
15:53076319 (GRCh37)
Canonical SPDI:: NC_000015.10:52784121:C:A
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.52784122C>A, NC_000015.9:g.53076319C>A

Select item 149015446917.

rs1490154469 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:52761748 (GRCh38)
15:53053945 (GRCh37)
Canonical SPDI:: NC_000015.10:52761747:G:T
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.52761748G>T, NC_000015.9:g.53053945G>T

Select item 149000735718.

rs1490007357 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:52785407 (GRCh38)
15:53077604 (GRCh37)
Canonical SPDI:: NC_000015.10:52785406:G:T
Gene:: ONECUT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.52785407G>T, NC_000015.9:g.53077604G>T

Select item 148989164519.

rs1489891645 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:52789255 (GRCh38)
15:53081452 (GRCh37)
Canonical SPDI:: NC_000015.10:52789254:G:T
Gene:: ONECUT1 (Varview), LOC105370824 (Varview)
Functional Consequence:: upstream_transcript_variant,missense_variant,coding_sequence_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.00004/1 (TOMMO)
HGVS:: NC_000015.10:g.52789255G>T, NC_000015.9:g.53081452G>T, NM_004498.4:c.630C>A, NM_004498.3:c.630C>A, NM_004498.2:c.630C>A, NP_004489.1:p.Asp210Glu

Select item 148979763320.

rs1489797633 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:52789801 (GRCh38)
15:53081998 (GRCh37)
Canonical SPDI:: NC_000015.10:52789800:C:A
Gene:: ONECUT1 (Varview), LOC105370824 (Varview)
Functional Consequence:: upstream_transcript_variant,coding_sequence_variant,synonymous_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.52789801C>A, NC_000015.9:g.53081998C>A, NM_004498.4:c.84G>T, NM_004498.3:c.84G>T, NM_004498.2:c.84G>T

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