SNP Links for Gene (Select 3185) - SNP

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Select item 14915772481.

rs1491577248 [Homo sapiens]

Variant type:: INS
Alleles:: ->CCTGAATACAGCATGGGCAGGTGGGAAT,CCTGAATACAGCATGGGCAGGTGGGAATTTGTAGCTATGGAGCAG [Show Flanks]
Chromosome:: 10:43396339 (GRCh38)
10:43891788 (GRCh37)
Canonical SPDI:: NC_000010.11:43396339::CCTGAATACAGCATGGGCAGGTGGGAAT,NC_000010.11:43396339::CCTGAATACAGCATGGGCAGGTGGGAATTTGTAGCTATGGAGCAG
Gene:: HNRNPF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCTGAATACAGCATGGGCAGGTGGGAATTTGTAGCTATGGAGCAG=0.0002/1 (ALFA)
HGVS:: NC_000010.11:g.43396339_43396340insCCTGAATACAGCATGGGCAGGTGGGAAT, NC_000010.11:g.43396339_43396340insCCTGAATACAGCATGGGCAGGTGGGAATTTGTAGCTATGGAGCAG, NC_000010.10:g.43891787_43891788insCCTGAATACAGCATGGGCAGGTGGGAAT, NC_000010.10:g.43891787_43891788insCCTGAATACAGCATGGGCAGGTGGGAATTTGTAGCTATGGAGCAG

Select item 14914664182.

rs1491466418 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 10:43397912 (GRCh38)
10:43893361 (GRCh37)
Canonical SPDI:: NC_000010.11:43397912:T:TT
Gene:: HNRNPF (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.43397913dup, NC_000010.10:g.43893361dup

Select item 14913914153.

rs1491391415 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 10:43396342 (GRCh38)
10:43891790 (GRCh37)
Canonical SPDI:: NC_000010.11:43396338:CTCTC:CTC
Gene:: HNRNPF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTC=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.43396340TC[1], NC_000010.10:g.43891788TC[1]

Select item 14912755624.

rs1491275562 has merged into rs56118525 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 10:43391305 (GRCh38)
10:43886753 (GRCh37)
Canonical SPDI:: NC_000010.11:43391292:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:43391292:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000010.11:43391292:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:43391292:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:43391292:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:43391292:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA
Gene:: HNRNPF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.275/11 (GENOME_DK)
HGVS:: NC_000010.11:g.43391305_43391308del, NC_000010.11:g.43391306_43391308del, NC_000010.11:g.43391307_43391308del, NC_000010.11:g.43391308del, NC_000010.11:g.43391308dup, NC_000010.11:g.43391307_43391308dup, NC_000010.10:g.43886753_43886756del, NC_000010.10:g.43886754_43886756del, NC_000010.10:g.43886755_43886756del, NC_000010.10:g.43886756del, NC_000010.10:g.43886756dup, NC_000010.10:g.43886755_43886756dup

Select item 14912070825.

rs1491207082 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CAGTGCAAGACTCTGTCTCA [Show Flanks]
Chromosome:: 10:43391293 (GRCh38)
10:43886742 (GRCh37)
Canonical SPDI:: NC_000010.11:43391293:A:ACAGTGCAAGACTCTGTCTCA
Gene:: HNRNPF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACAGTGCAAGACTCTGTCTCA=0./0 (ALFA)
HGVS:: NC_000010.11:g.43391294_43391295insCAGTGCAAGACTCTGTCTCA, NC_000010.10:g.43886742_43886743insCAGTGCAAGACTCTGTCTCA

Select item 14911681996.

rs1491168199 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 10:43397977 (GRCh38)
10:43893425 (GRCh37)
Canonical SPDI:: NC_000010.11:43397974:AGAG:AG
Gene:: HNRNPF (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAG=0.000498/7 (ALFA)
-=0.000285/40 (GnomAD)
-=0.000306/81 (TOPMED)
-=0.000312/2 (1000Genomes)
-=0.000519/2 (ALSPAC)
-=0.000809/3 (TWINSUK)
HGVS:: NC_000010.11:g.43397975AG[1], NC_000010.10:g.43893423AG[1]

Select item 14911392337.

rs1491139233 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 10:43397915 (GRCh38)
10:43893363 (GRCh37)
Canonical SPDI:: NC_000010.11:43397911:ATATA:ATA
Gene:: HNRNPF (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: ATA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.43397913TA[1], NC_000010.10:g.43893361TA[1]

Select item 14910592918.

rs1491059291 has merged into rs59258374 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,TT,TTT,TTTTT,TTTTTT [Show Flanks]
Chromosome:: 10:43402902 (GRCh38)
10:43898350 (GRCh37)
Canonical SPDI:: NC_000010.11:43402894:TTTTTTTTTTT:TTTTTTT,NC_000010.11:43402894:TTTTTTTTTTT:TTTTTTTTT,NC_000010.11:43402894:TTTTTTTTTTT:TTTTTTTTTT,NC_000010.11:43402894:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000010.11:43402894:TTTTTTTTTTT:TTTTTTTTTTTTT
Gene:: HNRNPF (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.12202/451 (1000Genomes)
HGVS:: NC_000010.11:g.43402902_43402905del, NC_000010.11:g.43402904_43402905del, NC_000010.11:g.43402905del, NC_000010.11:g.43402905dup, NC_000010.11:g.43402904_43402905dup, NC_000010.10:g.43898350_43898353del, NC_000010.10:g.43898352_43898353del, NC_000010.10:g.43898353del, NC_000010.10:g.43898353dup, NC_000010.10:g.43898352_43898353dup

Select item 14909404799.

rs1490940479 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:43411174 (GRCh38)
10:43906622 (GRCh37)
Canonical SPDI:: NC_000010.11:43411173:C:T
Gene:: HNRNPF (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.43411174C>T, NC_000010.10:g.43906622C>T

Select item 149086220310.

rs1490862203 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:43398086 (GRCh38)
10:43893534 (GRCh37)
Canonical SPDI:: NC_000010.11:43398085:G:T
Gene:: HNRNPF (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.43398086G>T, NC_000010.10:g.43893534G>T

Select item 149083764111.

rs1490837641 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 10:43405073 (GRCh38)
10:43900521 (GRCh37)
Canonical SPDI:: NC_000010.11:43405071:CTC:C
Gene:: HNRNPF (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.43405073_43405074del, NC_000010.10:g.43900521_43900522del

Select item 149076895112.

rs1490768951 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:43393874 (GRCh38)
10:43889322 (GRCh37)
Canonical SPDI:: NC_000010.11:43393873:C:T
Gene:: HNRNPF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.43393874C>T, NC_000010.10:g.43889322C>T

Select item 149043977113.

rs1490439771 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:43397661 (GRCh38)
10:43893109 (GRCh37)
Canonical SPDI:: NC_000010.11:43397660:T:C
Gene:: HNRNPF (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000224/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000010.11:g.43397661T>C, NC_000010.10:g.43893109T>C

Select item 149042082214.

rs1490420822 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 10:43410833 (GRCh38)
10:43906281 (GRCh37)
Canonical SPDI:: NC_000010.11:43410832:T:A,NC_000010.11:43410832:T:G
Gene:: HNRNPF (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.43410833T>A, NC_000010.11:g.43410833T>G, NC_000010.10:g.43906281T>A, NC_000010.10:g.43906281T>G

Select item 149038706615.

rs1490387066 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:43388808 (GRCh38)
10:43884256 (GRCh37)
Canonical SPDI:: NC_000010.11:43388807:A:G
Gene:: HNRNPF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.43388808A>G, NC_000010.10:g.43884256A>G

Select item 149028035716.

rs1490280357 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 10:43398344 (GRCh38)
10:43893792 (GRCh37)
Canonical SPDI:: NC_000010.11:43398343:G:
Gene:: HNRNPF (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00857/912 (GnomAD)
-=0.010462/67 (1000Genomes)
HGVS:: NC_000010.11:g.43398344del, NC_000010.10:g.43893792del

Select item 149009148517.

rs1490091485 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 10:43410002 (GRCh38)
10:43905450 (GRCh37)
Canonical SPDI:: NC_000010.11:43410001:G:
Gene:: HNRNPF (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.0006/10 (TOMMO)
HGVS:: NC_000010.11:g.43410002del, NC_000010.10:g.43905450del

Select item 148994021918.

rs1489940219 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:43392741 (GRCh38)
10:43888189 (GRCh37)
Canonical SPDI:: NC_000010.11:43392740:A:T
Gene:: HNRNPF (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.43392741A>T, NC_000010.10:g.43888189A>T

Select item 148953510419.

rs1489535104 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 10:43387193 (GRCh38)
10:43882641 (GRCh37)
Canonical SPDI:: NC_000010.11:43387192:A:C,NC_000010.11:43387192:A:T
Gene:: HNRNPF (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.43387193A>C, NC_000010.11:g.43387193A>T, NC_000010.10:g.43882641A>C, NC_000010.10:g.43882641A>T, NM_004966.4:c.692T>G, NM_004966.4:c.692T>A, NM_004966.3:c.692T>G, NM_004966.3:c.692T>A, NM_001098208.2:c.692T>G, NM_001098208.2:c.692T>A, NM_001098208.1:c.692T>G, NM_001098208.1:c.692T>A, NM_001098205.2:c.692T>G, NM_001098205.2:c.692T>A, NM_001098205.1:c.692T>G, NM_001098205.1:c.692T>A, NM_001098207.2:c.692T>G, NM_001098207.2:c.692T>A, NM_001098207.1:c.692T>G, NM_001098207.1:c.692T>A, NM_001098206.2:c.692T>G, NM_001098206.2:c.692T>A, NM_001098206.1:c.692T>G, NM_001098206.1:c.692T>A, NM_001098204.2:c.692T>G, NM_001098204.2:c.692T>A, NM_001098204.1:c.692T>G, NM_001098204.1:c.692T>A, NP_004957.1:p.Met231Arg, NP_004957.1:p.Met231Lys, NP_001091678.1:p.Met231Arg, NP_001091678.1:p.Met231Lys, NP_001091675.1:p.Met231Arg, NP_001091675.1:p.Met231Lys, NP_001091677.1:p.Met231Arg, NP_001091677.1:p.Met231Lys, NP_001091676.1:p.Met231Arg, NP_001091676.1:p.Met231Lys, NP_001091674.1:p.Met231Arg, NP_001091674.1:p.Met231Lys

Select item 148933585520.

rs1489335855 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:43406969 (GRCh38)
10:43902417 (GRCh37)
Canonical SPDI:: NC_000010.11:43406968:T:C
Gene:: HNRNPF (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000035/1 (TOMMO)
HGVS:: NC_000010.11:g.43406969T>C, NC_000010.10:g.43902417T>C

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