SNP Links for Gene (Select 338005) - SNP

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Select item 14915292391.

rs1491529239 has merged into rs201865854 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTT,T [Show Flanks]
Chromosome:: 14:106493742 (GRCh38)
14:106949756 (GRCh37)
Canonical SPDI:: NC_000014.9:106493742:T:TGTT,NC_000014.9:106493742:T:TT
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTT=0./0 (ALFA)
HGVS:: NC_000014.9:g.106493743_106493744insGTT, NC_000014.9:g.106493743dup, NG_001019.6:g.386602_386603insACA, NG_001019.6:g.386602dup, NT_187600.1:g.985422_985423insGTT, NT_187600.1:g.985422dup, NW_004166863.1:g.1156910_1156911insGTT, NW_004166863.1:g.1156910dup, NC_000014.8:g.106949757_106949758insGTT, NC_000014.8:g.106949757dup

Select item 14913479672.

rs1491347967 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>-,GAGA [Show Flanks]
Chromosome:: 14:106483244 (GRCh38)
14:106939251 (GRCh37)
Canonical SPDI:: NC_000014.9:106483236:AGAGAGAGA:AGAGAGA,NC_000014.9:106483236:AGAGAGAGA:AGAGAGAGAGA
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGAGAGAGA=0.00017/2 (ALFA)
HGVS:: NC_000014.9:g.106483238GA[3], NC_000014.9:g.106483238GA[5], NG_001019.6:g.397101CT[3], NG_001019.6:g.397101CT[5], NT_187600.1:g.974917GA[3], NT_187600.1:g.974917GA[5], NW_004166863.1:g.1146405GA[3], NW_004166863.1:g.1146405GA[5], NC_000014.8:g.106939245GA[3], NC_000014.8:g.106939245GA[5]

Select item 14911790923.

rs1491179092 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 14:106483236 (GRCh38)
14:106939243 (GRCh37)
Canonical SPDI:: NC_000014.9:106483235:AA:
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000008/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000014.9:g.106483236_106483237del, NG_001019.6:g.397108_397109del, NT_187600.1:g.974915_974916del, NW_004166863.1:g.1146403_1146404del, NC_000014.8:g.106939243_106939244del

Select item 14906997664.

rs1490699766 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:106481113 (GRCh38)
14:106937120 (GRCh37)
Canonical SPDI:: NC_000014.9:106481112:A:G
Gene:: LINC00221 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.106481113A>G, NG_001019.6:g.399232T>C, NT_187600.1:g.972792A>G, NW_004166863.1:g.1144280A>G, NC_000014.8:g.106937120A>G

Select item 14906968935.

rs1490696893 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 14:106495967 (GRCh38)
14:106951981 (GRCh37)
Canonical SPDI:: NC_000014.9:106495966:T:
Gene:: LINC00221 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.106495967del, NG_001019.6:g.384378del, NT_187600.1:g.987646del, NW_004166863.1:g.1159134del, NC_000014.8:g.106951981del

Select item 14906618226.

rs1490661822 [Homo sapiens]

Variant type:: DELINS
Alleles:: AACA>- [Show Flanks]
Chromosome:: 14:106488250 (GRCh38)
14:106944257 (GRCh37)
Canonical SPDI:: NC_000014.9:106488247:CAAACA:CA
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CA=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000019/5 (TOPMED)
HGVS:: NC_000014.9:g.106488250_106488253del, NG_001019.6:g.392094_392097del, NT_187600.1:g.979929_979932del, NW_004166863.1:g.1151417_1151420del, NC_000014.8:g.106944257_106944260del

Select item 14904077007.

rs1490407700 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:106487249 (GRCh38)
14:106943256 (GRCh37)
Canonical SPDI:: NC_000014.9:106487248:G:A
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000029/4 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000014.9:g.106487249G>A, NG_001019.6:g.393096C>T, NT_187600.1:g.978928G>A, NW_004166863.1:g.1150416G>A, NC_000014.8:g.106943256G>A

Select item 14902086738.

rs1490208673 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 14:106480750 (GRCh38)
14:106936757 (GRCh37)
Canonical SPDI:: NC_000014.9:106480749:G:A,NC_000014.9:106480749:G:T
Gene:: LINC00221 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000014.9:g.106480750G>A, NC_000014.9:g.106480750G>T, NG_001019.6:g.399595C>T, NG_001019.6:g.399595C>A, NT_187600.1:g.972429G>A, NT_187600.1:g.972429G>T, NW_004166863.1:g.1143917G>A, NW_004166863.1:g.1143917G>T, NC_000014.8:g.106936757G>A, NC_000014.8:g.106936757G>T

Select item 14901376489.

rs1490137648 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 14:106487916 (GRCh38)
14:106943923 (GRCh37)
Canonical SPDI:: NC_000014.9:106487915:T:C,NC_000014.9:106487915:T:G
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.106487916T>C, NC_000014.9:g.106487916T>G, NG_001019.6:g.392429A>G, NG_001019.6:g.392429A>C, NT_187600.1:g.979595T>C, NT_187600.1:g.979595T>G, NW_004166863.1:g.1151083T>C, NW_004166863.1:g.1151083T>G, NC_000014.8:g.106943923T>C, NC_000014.8:g.106943923T>G

Select item 148968210110.

rs1489682101 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:106482989 (GRCh38)
14:106938996 (GRCh37)
Canonical SPDI:: NC_000014.9:106482988:C:T
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000014.9:g.106482989C>T, NG_001019.6:g.397356G>A, NT_187600.1:g.974668C>T, NW_004166863.1:g.1146156C>T, NC_000014.8:g.106938996C>T

Select item 148959855911.

rs1489598559 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:106486697 (GRCh38)
14:106942704 (GRCh37)
Canonical SPDI:: NC_000014.9:106486696:T:C
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000014.9:g.106486697T>C, NG_001019.6:g.393648A>G, NT_187600.1:g.978376T>C, NW_004166863.1:g.1149864T>C, NC_000014.8:g.106942704T>C

Select item 148948418012.

rs1489484180 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 14:106485819 (GRCh38)
14:106941826 (GRCh37)
Canonical SPDI:: NC_000014.9:106485818:G:A,NC_000014.9:106485818:G:C
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000424/8 (ALFA)
C=0.000257/36 (GnomAD)
C=0.000283/75 (TOPMED)
A=0.000779/13 (TOMMO)
HGVS:: NC_000014.9:g.106485819G>A, NC_000014.9:g.106485819G>C, NG_001019.6:g.394526C>T, NG_001019.6:g.394526C>G, NT_187600.1:g.977498G>A, NT_187600.1:g.977498G>C, NW_004166863.1:g.1148986G>A, NW_004166863.1:g.1148986G>C, NC_000014.8:g.106941826G>A, NC_000014.8:g.106941826G>C

Select item 148924901713.

rs1489249017 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 14:106489782 (GRCh38)
14:106945789 (GRCh37)
Canonical SPDI:: NC_000014.9:106489781:T:G
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.106489782T>G, NG_001019.6:g.390563A>C, NT_187600.1:g.981461T>G, NW_004166863.1:g.1152949T>G, NC_000014.8:g.106945789T>G

Select item 148920446414.

rs1489204464 has merged into rs1265483117 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,AAA,AAAAA [Show Flanks]
Chromosome:: 14:106494903 (GRCh38)
14:106950917 (GRCh37)
Canonical SPDI:: NC_000014.9:106494898:AAAAAAAA:AAAA,NC_000014.9:106494898:AAAAAAAA:AAAAAAA,NC_000014.9:106494898:AAAAAAAA:AAAAAAAAA
Gene:: LINC00221 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAA=0./0 (ALFA)
A=0.00011/2 (TOMMO)
HGVS:: NC_000014.9:g.106494903_106494906del, NC_000014.9:g.106494906del, NC_000014.9:g.106494906dup, NG_001019.6:g.385443_385446del, NG_001019.6:g.385446del, NG_001019.6:g.385446dup, NT_187600.1:g.986582_986585del, NT_187600.1:g.986585del, NT_187600.1:g.986585dup, NW_004166863.1:g.1158070_1158073del, NW_004166863.1:g.1158073del, NW_004166863.1:g.1158073dup, NC_000014.8:g.106950917_106950920del, NC_000014.8:g.106950920del, NC_000014.8:g.106950920dup, NR_027457.2:n.1140_1143del, NR_027457.2:n.1143del, NR_027457.2:n.1143dup, NR_027457.1:n.1131_1134del, NR_027457.1:n.1134del, NR_027457.1:n.1134dup

Select item 148834858715.

rs1488348587 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 14:106482075 (GRCh38)
14:106938081 (GRCh37)
Canonical SPDI:: NC_000014.9:106482074:C:A
Gene:: LINC00221 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00087/15 (TOMMO)
A=0.00137/4 (KOREAN)
HGVS:: NC_000014.9:g.106482075C>A, NG_001019.6:g.398270G>T, NT_187600.1:g.973754C>A, NW_004166863.1:g.1145242C>A, NC_000014.8:g.106938081C>A

Select item 148826585416.

rs1488265854 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:106489302 (GRCh38)
14:106945309 (GRCh37)
Canonical SPDI:: NC_000014.9:106489301:A:G
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000034/9 (TOPMED)
HGVS:: NC_000014.9:g.106489302A>G, NG_001019.6:g.391043T>C, NT_187600.1:g.980981A>G, NW_004166863.1:g.1152469A>G, NC_000014.8:g.106945309A>G

Select item 148819039717.

rs1488190397 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 14:106481745 (GRCh38)
14:106937751 (GRCh37)
Canonical SPDI:: NC_000014.9:106481744:G:A,NC_000014.9:106481744:G:C
Gene:: LINC00221 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000014.9:g.106481745G>A, NC_000014.9:g.106481745G>C, NG_001019.6:g.398600C>T, NG_001019.6:g.398600C>G, NT_187600.1:g.973424G>A, NT_187600.1:g.973424G>C, NW_004166863.1:g.1144912G>A, NW_004166863.1:g.1144912G>C, NC_000014.8:g.106937751G>A, NC_000014.8:g.106937751G>C

Select item 148808066218.

rs1488080662 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 14:106488920 (GRCh38)
14:106944927 (GRCh37)
Canonical SPDI:: NC_000014.9:106488919:A:C
Gene:: LINC00221 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.106488920A>C, NG_001019.6:g.391425T>G, NT_187600.1:g.980599A>C, NW_004166863.1:g.1152087A>C, NC_000014.8:g.106944927A>C, NR_027457.2:n.352A>C, NR_027457.1:n.343A>C

Select item 148790492719.

rs1487904927 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:106489955 (GRCh38)
14:106945962 (GRCh37)
Canonical SPDI:: NC_000014.9:106489954:C:T
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000014.9:g.106489955C>T, NG_001019.6:g.390390G>A, NT_187600.1:g.981634C>T, NW_004166863.1:g.1153122C>T, NC_000014.8:g.106945962C>T

Select item 148775322920.

rs1487753229 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:106488218 (GRCh38)
14:106944225 (GRCh37)
Canonical SPDI:: NC_000014.9:106488217:G:A
Gene:: LINC00221 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000014.9:g.106488218G>A, NG_001019.6:g.392127C>T, NT_187600.1:g.979897G>A, NW_004166863.1:g.1151385G>A, NC_000014.8:g.106944225G>A

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