SNP Links for Gene (Select 338674) - SNP

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Select item 14913585271.

rs1491358527 [Homo sapiens]

Variant type:: DEL
Alleles:: CC>- [Show Flanks]
Chromosome:: 11:55994260 (GRCh38)
11:55761736 (GRCh37)
Canonical SPDI:: NC_000011.10:55994259:CC:
Gene:: OR5F1 (Varview)
Functional Consequence:: frameshift_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: -=0.000004/1 (GnomAD_exomes)
-=0.000008/1 (ExAC)
HGVS:: NC_000011.10:g.55994260_55994261del, NC_000011.9:g.55761736_55761737del, NM_003697.1:c.365_366del, NP_003688.1:p.Arg122fs

Select item 14909293882.

rs1490929388 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:55995900 (GRCh38)
11:55763376 (GRCh37)
Canonical SPDI:: NC_000011.10:55995899:C:A
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.55995900C>A, NC_000011.9:g.55763376C>A

Select item 14904392753.

rs1490439275 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55996269 (GRCh38)
11:55763745 (GRCh37)
Canonical SPDI:: NC_000011.10:55996268:G:A
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.55996269G>A, NC_000011.9:g.55763745G>A

Select item 14901263194.

rs1490126319 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55996368 (GRCh38)
11:55763844 (GRCh37)
Canonical SPDI:: NC_000011.10:55996367:G:A
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.55996368G>A, NC_000011.9:g.55763844G>A

Select item 14897031715.

rs1489703171 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:55994816 (GRCh38)
11:55762292 (GRCh37)
Canonical SPDI:: NC_000011.10:55994815:T:G
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55994816T>G, NC_000011.9:g.55762292T>G

Select item 14888859376.

rs1488885937 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:55995522 (GRCh38)
11:55762998 (GRCh37)
Canonical SPDI:: NC_000011.10:55995521:C:T
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.55995522C>T, NC_000011.9:g.55762998C>T

Select item 14888150557.

rs1488815055 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:55994621 (GRCh38)
11:55762097 (GRCh37)
Canonical SPDI:: NC_000011.10:55994620:G:T
Gene:: OR5F1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.55994621G>T, NC_000011.9:g.55762097G>T, NM_003697.1:c.5C>A, NP_003688.1:p.Thr2Asn

Select item 14887899038.

rs1488789903 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:55995101 (GRCh38)
11:55762577 (GRCh37)
Canonical SPDI:: NC_000011.10:55995100:T:A
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.55995101T>A, NC_000011.9:g.55762577T>A

Select item 14887812169.

rs1488781216 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 11:55995877 (GRCh38)
11:55763353 (GRCh37)
Canonical SPDI:: NC_000011.10:55995876:T:A,NC_000011.10:55995876:T:C
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.55995877T>A, NC_000011.10:g.55995877T>C, NC_000011.9:g.55763353T>A, NC_000011.9:g.55763353T>C

Select item 148849948210.

rs1488499482 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:55995395 (GRCh38)
11:55762871 (GRCh37)
Canonical SPDI:: NC_000011.10:55995394:G:T
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.55995395G>T, NC_000011.9:g.55762871G>T

Select item 148827621311.

rs1488276213 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:55994371 (GRCh38)
11:55761847 (GRCh37)
Canonical SPDI:: NC_000011.10:55994370:T:C
Gene:: OR5F1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: C=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55994371T>C, NC_000011.9:g.55761847T>C, NM_003697.1:c.255A>G

Select item 148711468212.

rs1487114682 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 11:55994191 (GRCh38)
11:55761667 (GRCh37)
Canonical SPDI:: NC_000011.10:55994190:T:C,NC_000011.10:55994190:T:G
Gene:: OR5F1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000008/2 (GnomAD_exomes)
G=0.000071/1 (TOMMO)
G=0.000546/1 (Korea1K)
HGVS:: NC_000011.10:g.55994191T>C, NC_000011.10:g.55994191T>G, NC_000011.9:g.55761667T>C, NC_000011.9:g.55761667T>G, NM_003697.1:c.435A>G, NM_003697.1:c.435A>C

Select item 148680203113.

rs1486802031 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55994707 (GRCh38)
11:55762183 (GRCh37)
Canonical SPDI:: NC_000011.10:55994706:G:A
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00067/11 (ALFA)
A=0.00268/12 (Estonian)
HGVS:: NC_000011.10:g.55994707G>A, NC_000011.9:g.55762183G>A

Select item 148678925014.

rs1486789250 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:55994089 (GRCh38)
11:55761565 (GRCh37)
Canonical SPDI:: NC_000011.10:55994088:A:G,NC_000011.10:55994088:A:T
Gene:: OR5F1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant,stop_gained
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.55994089A>G, NC_000011.10:g.55994089A>T, NC_000011.9:g.55761565A>G, NC_000011.9:g.55761565A>T, NM_003697.1:c.537T>C, NM_003697.1:c.537T>A, NP_003688.1:p.Cys179Ter

Select item 148628062315.

rs1486280623 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:55993878 (GRCh38)
11:55761354 (GRCh37)
Canonical SPDI:: NC_000011.10:55993877:G:T
Gene:: OR5F1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55993878G>T, NC_000011.9:g.55761354G>T, NM_003697.1:c.748C>A, NP_003688.1:p.Leu250Met

Select item 148574271316.

rs1485742713 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:55993657 (GRCh38)
11:55761133 (GRCh37)
Canonical SPDI:: NC_000011.10:55993656:T:C
Gene:: OR5F1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.55993657T>C, NC_000011.9:g.55761133T>C

Select item 148516024117.

rs1485160241 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55993697 (GRCh38)
11:55761173 (GRCh37)
Canonical SPDI:: NC_000011.10:55993696:G:A
Gene:: OR5F1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55993697G>A, NC_000011.9:g.55761173G>A, NM_003697.1:c.929C>T, NP_003688.1:p.Thr310Ile

Select item 148481051918.

rs1484810519 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:55995640 (GRCh38)
11:55763116 (GRCh37)
Canonical SPDI:: NC_000011.10:55995639:A:C
Gene:: OR5F1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.55995640A>C, NC_000011.9:g.55763116A>C

Select item 148414724619.

rs1484147246 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:55994757 (GRCh38)
11:55762233 (GRCh37)
Canonical SPDI:: NC_000011.10:55994756:G:A
Gene:: OR5F1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000124/17 (GnomAD)
HGVS:: NC_000011.10:g.55994757G>A, NC_000011.9:g.55762233G>A

Select item 148256888720.

rs1482568887 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGTATAA>- [Show Flanks]
Chromosome:: 11:55994517 (GRCh38)
11:55761993 (GRCh37)
Canonical SPDI:: NC_000011.10:55994513:TAAGTGTATAA:TAA
Gene:: OR5F1 (Varview)
Functional Consequence:: frameshift_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: TAA=0.000111/1 (ALFA)
-=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.55994517_55994524del, NC_000011.9:g.55761993_55762000del, NM_003697.1:c.105_112del, NP_003688.1:p.Thr36fs

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