SNP Links for Gene (Select 339290) - SNP

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Select item 14891331721.

rs1489133172 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 18:5244214 (GRCh38)
18:5244213 (GRCh37)
Canonical SPDI:: NC_000018.10:5244213:T:C,NC_000018.10:5244213:T:G
Gene:: LINC00667 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.5244214T>C, NC_000018.10:g.5244214T>G, NC_000018.9:g.5244213T>C, NC_000018.9:g.5244213T>G, NR_015389.1:n.1685T>C, NR_015389.1:n.1685T>G

Select item 14890418072.

rs1489041807 has merged into rs10662496 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 18:5243311 (GRCh38)
18:5243310 (GRCh37)
Canonical SPDI:: NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000018.10:5243301:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC00667 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.3644/1825 (1000Genomes)
HGVS:: NC_000018.10:g.5243311_5243317del, NC_000018.10:g.5243312_5243317del, NC_000018.10:g.5243313_5243317del, NC_000018.10:g.5243314_5243317del, NC_000018.10:g.5243315_5243317del, NC_000018.10:g.5243316_5243317del, NC_000018.10:g.5243317del, NC_000018.10:g.5243317dup, NC_000018.10:g.5243316_5243317dup, NC_000018.10:g.5243315_5243317dup, NC_000018.10:g.5243314_5243317dup, NC_000018.10:g.5243313_5243317dup, NC_000018.10:g.5243312_5243317dup, NC_000018.10:g.5243311_5243317dup, NC_000018.10:g.5243310_5243317dup, NC_000018.10:g.5243309_5243317dup, NC_000018.10:g.5243308_5243317dup, NC_000018.10:g.5243307_5243317dup, NC_000018.10:g.5243306_5243317dup, NC_000018.10:g.5243304_5243317dup, NC_000018.10:g.5243303_5243317dup, NC_000018.9:g.5243310_5243316del, NC_000018.9:g.5243311_5243316del, NC_000018.9:g.5243312_5243316del, NC_000018.9:g.5243313_5243316del, NC_000018.9:g.5243314_5243316del, NC_000018.9:g.5243315_5243316del, NC_000018.9:g.5243316del, NC_000018.9:g.5243316dup, NC_000018.9:g.5243315_5243316dup, NC_000018.9:g.5243314_5243316dup, NC_000018.9:g.5243313_5243316dup, NC_000018.9:g.5243312_5243316dup, NC_000018.9:g.5243311_5243316dup, NC_000018.9:g.5243310_5243316dup, NC_000018.9:g.5243309_5243316dup, NC_000018.9:g.5243308_5243316dup, NC_000018.9:g.5243307_5243316dup, NC_000018.9:g.5243306_5243316dup, NC_000018.9:g.5243305_5243316dup, NC_000018.9:g.5243303_5243316dup, NC_000018.9:g.5243302_5243316dup

Select item 14890209963.

rs1489020996 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 18:5243404 (GRCh38)
18:5243403 (GRCh37)
Canonical SPDI:: NC_000018.10:5243403:G:C
Gene:: LINC00667 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.5243404G>C, NC_000018.9:g.5243403G>C

Select item 14887258954.

rs1488725895 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 18:5240483 (GRCh38)
18:5240482 (GRCh37)
Canonical SPDI:: NC_000018.10:5240482:C:A,NC_000018.10:5240482:C:T
Gene:: LINC00667 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000018.10:g.5240483C>A, NC_000018.10:g.5240483C>T, NC_000018.9:g.5240482C>A, NC_000018.9:g.5240482C>T, NG_026269.1:g.764G>T, NG_026269.1:g.764G>A

Select item 14885219545.

rs1488521954 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:5236258 (GRCh38)
18:5236257 (GRCh37)
Canonical SPDI:: NC_000018.10:5236257:C:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000072/19 (TOPMED)
HGVS:: NC_000018.10:g.5236258C>T, NC_000018.9:g.5236257C>T

Select item 14882564116.

rs1488256411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:5238077 (GRCh38)
18:5238076 (GRCh37)
Canonical SPDI:: NC_000018.10:5238076:C:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000049/13 (TOPMED)
T=0.00005/7 (GnomAD)
HGVS:: NC_000018.10:g.5238077C>T, NC_000018.9:g.5238076C>T

Select item 14877956087.

rs1487795608 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 18:5238376 (GRCh38)
18:5238375 (GRCh37)
Canonical SPDI:: NC_000018.10:5238375:C:A,NC_000018.10:5238375:C:G,NC_000018.10:5238375:C:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000016/2 (GnomAD_exomes)
T=0.000026/7 (TOPMED)
G=0.000239/4 (TOMMO)
HGVS:: NC_000018.10:g.5238376C>A, NC_000018.10:g.5238376C>G, NC_000018.10:g.5238376C>T, NC_000018.9:g.5238375C>A, NC_000018.9:g.5238375C>G, NC_000018.9:g.5238375C>T, NR_015389.1:n.277C>A, NR_015389.1:n.277C>G, NR_015389.1:n.277C>T

Select item 14875749408.

rs1487574940 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 18:5238433 (GRCh38)
18:5238432 (GRCh37)
Canonical SPDI:: NC_000018.10:5238432:G:A,NC_000018.10:5238432:G:C,NC_000018.10:5238432:G:T
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000018.10:g.5238433G>A, NC_000018.10:g.5238433G>C, NC_000018.10:g.5238433G>T, NC_000018.9:g.5238432G>A, NC_000018.9:g.5238432G>C, NC_000018.9:g.5238432G>T, NR_015389.1:n.334G>A, NR_015389.1:n.334G>C, NR_015389.1:n.334G>T

Select item 14875276899.

rs1487527689 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 18:5244951 (GRCh38)
18:5244950 (GRCh37)
Canonical SPDI:: NC_000018.10:5244950:A:G
Gene:: LINC00667 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000008/1 (GnomAD)
HGVS:: NC_000018.10:g.5244951A>G, NC_000018.9:g.5244950A>G, NR_015389.1:n.2422A>G

Select item 148708761810.

rs1487087618 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 18:5244033 (GRCh38)
18:5244033 (GRCh37)
Canonical SPDI:: NC_000018.10:5244033:TTTTTT:TTTTTTT
Gene:: LINC00667 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTTTTT=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.5244039dup, NC_000018.9:g.5244038dup, NR_015389.1:n.1510dup

Select item 148706191111.

rs1487061911 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:5244099 (GRCh38)
18:5244098 (GRCh37)
Canonical SPDI:: NC_000018.10:5244098:G:A
Gene:: LINC00667 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.5244099G>A, NC_000018.9:g.5244098G>A, NR_015389.1:n.1570G>A

Select item 148677080312.

rs1486770803 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 18:5241411 (GRCh38)
18:5241410 (GRCh37)
Canonical SPDI:: NC_000018.10:5241410:T:A,NC_000018.10:5241410:T:C
Gene:: LINC00667 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000018.10:g.5241411T>A, NC_000018.10:g.5241411T>C, NC_000018.9:g.5241410T>A, NC_000018.9:g.5241410T>C

Select item 148675882913.

rs1486758829 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 18:5244421 (GRCh38)
18:5244420 (GRCh37)
Canonical SPDI:: NC_000018.10:5244420:C:G
Gene:: LINC00667 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.5244421C>G, NC_000018.9:g.5244420C>G, NR_015389.1:n.1892C>G

Select item 148661514314.

rs1486615143 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:5238396 (GRCh38)
18:5238395 (GRCh37)
Canonical SPDI:: NC_000018.10:5238395:G:A
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.5238396G>A, NC_000018.9:g.5238395G>A, NR_015389.1:n.297G>A

Select item 148629018815.

rs1486290188 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 18:5238642 (GRCh38)
18:5238641 (GRCh37)
Canonical SPDI:: NC_000018.10:5238641:C:A
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.5238642C>A, NC_000018.9:g.5238641C>A, NR_015389.1:n.543C>A

Select item 148617324616.

rs1486173246 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TCGCCGCCACCGGGAT [Show Flanks]
Chromosome:: 18:5238032 (GRCh38)
18:5238032 (GRCh37)
Canonical SPDI:: NC_000018.10:5238032:TCGCCGCCACCGGGAT:TCGCCGCCACCGGGATTCGCCGCCACCGGGAT
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TCGCCGCCACCGGGATTCGCCGCCACCGGGAT=0./0 (ALFA)
TCGCCGCCACCGGGAT=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.5238033_5238048dup, NC_000018.9:g.5238032_5238047dup

Select item 148607031417.

rs1486070314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:5238584 (GRCh38)
18:5238583 (GRCh37)
Canonical SPDI:: NC_000018.10:5238583:G:A
Gene:: LINC00526 (Varview), LINC00667 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.5238584G>A, NC_000018.9:g.5238583G>A, NR_015389.1:n.485G>A

Select item 148556684918.

rs1485566849 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 18:5245561 (GRCh38)
18:5245560 (GRCh37)
Canonical SPDI:: NC_000018.10:5245560:G:T
Gene:: LINC00667 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.5245561G>T, NC_000018.9:g.5245560G>T, NR_015389.1:n.3032G>T

Select item 148540144719.

rs1485401447 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:5242600 (GRCh38)
18:5242599 (GRCh37)
Canonical SPDI:: NC_000018.10:5242599:G:A
Gene:: LINC00667 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000018.10:g.5242600G>A, NC_000018.9:g.5242599G>A

Select item 148537164720.

rs1485371647 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:5243751 (GRCh38)
18:5243750 (GRCh37)
Canonical SPDI:: NC_000018.10:5243750:G:A
Gene:: LINC00667 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.5243751G>A, NC_000018.9:g.5243750G>A, NR_015389.1:n.1222G>A

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