SNP Links for Gene (Select 342865) - SNP

Links from Gene

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Select item 14914034451.

rs1491403445 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 19:29558085 (GRCh38)
19:30048992 (GRCh37)
Canonical SPDI:: NC_000019.10:29558084:AT:
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.29558085_29558086del, NC_000019.9:g.30048992_30048993del

Select item 14913079722.

rs1491307972 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,G,T [Show Flanks]
Chromosome:: 19:29530442 (GRCh38)
19:30021350 (GRCh37)
Canonical SPDI:: NC_000019.10:29530442::A,NC_000019.10:29530442::G,NC_000019.10:29530442::T
Gene:: VSTM2B (Varview), LOC124904683 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
T=0.00016/1 (1000Genomes)
HGVS:: NC_000019.10:g.29530442_29530443insA, NC_000019.10:g.29530442_29530443insG, NC_000019.10:g.29530442_29530443insT, NC_000019.9:g.30021349_30021350insA, NC_000019.9:g.30021349_30021350insG, NC_000019.9:g.30021349_30021350insT

Select item 14911398513.

rs1491139851 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT [Show Flanks]
Chromosome:: 19:29558085 (GRCh38)
19:30048993 (GRCh37)
Canonical SPDI:: NC_000019.10:29558085:TGT:TGTGT
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGT=0./0 (ALFA)
TG=0.000014/2 (GnomAD)
TG=0.000023/6 (TOPMED)
HGVS:: NC_000019.10:g.29558087_29558088dup, NC_000019.9:g.30048994_30048995dup

Select item 14910829824.

rs1491082982 has merged into rs71171739 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAA>-,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 19:29556107 (GRCh38)
19:30047014 (GRCh37)
Canonical SPDI:: NC_000019.10:29556099:AAAAAAAAAAAAA:AAAAAAA,NC_000019.10:29556099:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000019.10:29556099:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000019.10:29556099:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000019.10:29556099:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000019.10:29556099:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000019.10:29556099:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000019.10:29556099:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
A=0.4286/1652 (ALSPAC)
A=0.4358/1616 (TWINSUK)
HGVS:: NC_000019.10:g.29556107_29556112del, NC_000019.10:g.29556111_29556112del, NC_000019.10:g.29556112del, NC_000019.10:g.29556112dup, NC_000019.10:g.29556111_29556112dup, NC_000019.10:g.29556109_29556112dup, NC_000019.10:g.29556107_29556112dup, NC_000019.10:g.29556100_29556112dup, NC_000019.9:g.30047014_30047019del, NC_000019.9:g.30047018_30047019del, NC_000019.9:g.30047019del, NC_000019.9:g.30047019dup, NC_000019.9:g.30047018_30047019dup, NC_000019.9:g.30047016_30047019dup, NC_000019.9:g.30047014_30047019dup, NC_000019.9:g.30047007_30047019dup

Select item 14909514415.

rs1490951441 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 19:29554818 (GRCh38)
19:30045725 (GRCh37)
Canonical SPDI:: NC_000019.10:29554817:GGG:GG
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29554820del, NC_000019.9:g.30045727del

Select item 14909203686.

rs1490920368 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:29532365 (GRCh38)
19:30023272 (GRCh37)
Canonical SPDI:: NC_000019.10:29532364:T:A
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.29532365T>A, NC_000019.9:g.30023272T>A

Select item 14906785577.

rs1490678557 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:29526451 (GRCh38)
19:30017358 (GRCh37)
Canonical SPDI:: NC_000019.10:29526450:C:T
Gene:: VSTM2B-DT (Varview), VSTM2B (Varview), LOC124904683 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.29526451C>T, NC_000019.9:g.30017358C>T, XM_011526902.3:c.-133C>T, XM_011526902.2:c.-133C>T, XM_011526902.1:c.-133C>T, XM_011526903.3:c.-133C>T, XM_011526903.2:c.-133C>T, XM_011526903.1:c.-133C>T, NM_001146339.2:c.-133C>T, NM_001384640.1:c.-133C>T

Select item 14906770218.

rs1490677021 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:29524571 (GRCh38)
19:30015478 (GRCh37)
Canonical SPDI:: NC_000019.10:29524570:C:A,NC_000019.10:29524570:C:T
Gene:: VSTM2B-DT (Varview), VSTM2B (Varview), LOC124904683 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
C=0.25/1 (SGDP_PRJ)
HGVS:: NC_000019.10:g.29524571C>A, NC_000019.10:g.29524571C>T, NC_000019.9:g.30015478C>A, NC_000019.9:g.30015478C>T

Select item 14905657369.

rs1490565736 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 19:29525376 (GRCh38)
19:30016283 (GRCh37)
Canonical SPDI:: NC_000019.10:29525375:C:G,NC_000019.10:29525375:C:T
Gene:: VSTM2B-DT (Varview), VSTM2B (Varview), LOC124904683 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29525376C>G, NC_000019.10:g.29525376C>T, NC_000019.9:g.30016283C>G, NC_000019.9:g.30016283C>T

Select item 149055624410.

rs1490556244 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 19:29561176 (GRCh38)
19:30052083 (GRCh37)
Canonical SPDI:: NC_000019.10:29561175:G:C,NC_000019.10:29561175:G:T
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.29561176G>C, NC_000019.10:g.29561176G>T, NC_000019.9:g.30052083G>C, NC_000019.9:g.30052083G>T

Select item 149054092111.

rs1490540921 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:29560141 (GRCh38)
19:30051048 (GRCh37)
Canonical SPDI:: NC_000019.10:29560140:C:G
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29560141C>G, NC_000019.9:g.30051048C>G

Select item 149049610012.

rs1490496100 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:29538255 (GRCh38)
19:30029162 (GRCh37)
Canonical SPDI:: NC_000019.10:29538254:G:A
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29538255G>A, NC_000019.9:g.30029162G>A

Select item 149047108113.

rs1490471081 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:29539118 (GRCh38)
19:30030025 (GRCh37)
Canonical SPDI:: NC_000019.10:29539117:T:C
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29539118T>C, NC_000019.9:g.30030025T>C

Select item 149045804714.

rs1490458047 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:29545696 (GRCh38)
19:30036603 (GRCh37)
Canonical SPDI:: NC_000019.10:29545695:A:G
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29545696A>G, NC_000019.9:g.30036603A>G

Select item 149039865715.

rs1490398657 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:29539542 (GRCh38)
19:30030449 (GRCh37)
Canonical SPDI:: NC_000019.10:29539541:G:C
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29539542G>C, NC_000019.9:g.30030449G>C

Select item 149033145716.

rs1490331457 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:29537856 (GRCh38)
19:30028763 (GRCh37)
Canonical SPDI:: NC_000019.10:29537855:C:A,NC_000019.10:29537855:C:T
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29537856C>A, NC_000019.10:g.29537856C>T, NC_000019.9:g.30028763C>A, NC_000019.9:g.30028763C>T

Select item 149021413117.

rs1490214131 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:29559203 (GRCh38)
19:30050110 (GRCh37)
Canonical SPDI:: NC_000019.10:29559202:G:T
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.29559203G>T, NC_000019.9:g.30050110G>T

Select item 149019150818.

rs1490191508 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:29523508 (GRCh38)
19:30014415 (GRCh37)
Canonical SPDI:: NC_000019.10:29523507:A:G
Gene:: VSTM2B-DT (Varview), VSTM2B (Varview), LOC124904683 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29523508A>G, NC_000019.9:g.30014415A>G

Select item 149016305119.

rs1490163051 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:29558247 (GRCh38)
19:30049154 (GRCh37)
Canonical SPDI:: NC_000019.10:29558246:T:C
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.29558247T>C, NC_000019.9:g.30049154T>C

Select item 149002235120.

rs1490022351 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:29546114 (GRCh38)
19:30037021 (GRCh37)
Canonical SPDI:: NC_000019.10:29546113:G:A
Gene:: VSTM2B (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.29546114G>A, NC_000019.9:g.30037021G>A

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