SNP Links for Gene (Select 343702) - SNP

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Items: 1 to 20 of 7395

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Select item 14915663091.

rs1491566309 [Homo sapiens]

Variant type:: INS
Alleles:: ->T,TGTGTGTGT,TGTGTGTGTGTGT [Show Flanks]
Chromosome:: 20:31990214 (GRCh38)
20:30578018 (GRCh37)
Canonical SPDI:: NC_000020.11:31990214::T,NC_000020.11:31990214::TGTGTGTGT,NC_000020.11:31990214::TGTGTGTGTGTGT
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000020.11:g.31990214_31990215insT, NC_000020.11:g.31990214_31990215insTGTGTGTGT, NC_000020.11:g.31990214_31990215insTGTGTGTGTGTGT, NC_000020.10:g.30578017_30578018insT, NC_000020.10:g.30578017_30578018insTGTGTGTGT, NC_000020.10:g.30578017_30578018insTGTGTGTGTGTGT

Select item 14912368862.

rs1491236886 [Homo sapiens]

Variant type:: DEL
Alleles:: GG>- [Show Flanks]
Chromosome:: 20:31990214 (GRCh38)
20:30578017 (GRCh37)
Canonical SPDI:: NC_000020.11:31990213:GG:
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000169/2 (ALFA)
-=0.000051/7 (GnomAD)
HGVS:: NC_000020.11:g.31990214_31990215del, NC_000020.10:g.30578017_30578018del

Select item 14910485783.

rs1491048578 has merged into rs34871534 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA [Show Flanks]
Chromosome:: 20:31979148 (GRCh38)
20:30566951 (GRCh37)
Canonical SPDI:: NC_000020.11:31979134:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000020.11:31979134:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000020.11:31979134:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000020.11:31979134:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000020.11:31979134:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.3514/1760 (1000Genomes)
-=0.3951/226 (NorthernSweden)
-=0.4019/1549 (ALSPAC)
-=0.4088/1516 (TWINSUK)
A=0.5/20 (GENOME_DK)
HGVS:: NC_000020.11:g.31979148_31979149del, NC_000020.11:g.31979149del, NC_000020.11:g.31979149dup, NC_000020.11:g.31979148_31979149dup, NC_000020.11:g.31979147_31979149dup, NC_000020.10:g.30566951_30566952del, NC_000020.10:g.30566952del, NC_000020.10:g.30566952dup, NC_000020.10:g.30566951_30566952dup, NC_000020.10:g.30566950_30566952dup

Select item 14909433934.

rs1490943393 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 20:31981181 (GRCh38)
20:30568984 (GRCh37)
Canonical SPDI:: NC_000020.11:31981180:A:T
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.31981181A>T, NC_000020.10:g.30568984A>T

Select item 14906261895.

rs1490626189 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31967926 (GRCh38)
20:30555729 (GRCh37)
Canonical SPDI:: NC_000020.11:31967925:G:A
Gene:: XKR7 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00005/7 (GnomAD)
A=0.000057/15 (TOPMED)
A=0.000156/1 (1000Genomes)
A=0.00092/15 (TOMMO)
A=0.001107/2 (Korea1K)
A=0.002755/8 (KOREAN)
HGVS:: NC_000020.11:g.31967926G>A, NC_000020.10:g.30555729G>A

Select item 14905093096.

rs1490509309 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACTACCAAGCAGACCCAGCATCCAAGACACAGACAGACAG>-,ACTACCAAGCAGACCCAGCATCCAAGACACAGACAGACAGACTACCAAGCAGACCCAGCATCCAAGACACAGACAGACAG [Show Flanks]
Chromosome:: 20:31985710 (GRCh38)
20:30573513 (GRCh37)
Canonical SPDI:: NC_000020.11:31985680:GACCCAGCATCCAAGACACAGACAGACAGACTACCAAGCAGACCCAGCATCCAAGACACAGACAGACAG:GACCCAGCATCCAAGACACAGACAGACAG,NC_000020.11:31985680:GACCCAGCATCCAAGACACAGACAGACAGACTACCAAGCAGACCCAGCATCCAAGACACAGACAGACAG:GACCCAGCATCCAAGACACAGACAGACAGACTACCAAGCAGACCCAGCATCCAAGACACAGACAGACAGACTACCAAGCAGACCCAGCATCCAAGACACAGACAGACAG
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000020.11:g.31985710_31985749del, NC_000020.11:g.31985710_31985749dup, NC_000020.10:g.30573513_30573552del, NC_000020.10:g.30573513_30573552dup

Select item 14904981137.

rs1490498113 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:31995547 (GRCh38)
20:30583350 (GRCh37)
Canonical SPDI:: NC_000020.11:31995546:C:A
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000038/10 (TOPMED)
HGVS:: NC_000020.11:g.31995547C>A, NC_000020.10:g.30583350C>A

Select item 14904431288.

rs1490443128 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31987307 (GRCh38)
20:30575110 (GRCh37)
Canonical SPDI:: NC_000020.11:31987306:G:A
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000020.11:g.31987307G>A, NC_000020.10:g.30575110G>A

Select item 14904416639.

rs1490441663 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:31994448 (GRCh38)
20:30582251 (GRCh37)
Canonical SPDI:: NC_000020.11:31994447:C:T
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.31994448C>T, NC_000020.10:g.30582251C>T

Select item 149042930110.

rs1490429301 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 20:31979687 (GRCh38)
20:30567490 (GRCh37)
Canonical SPDI:: NC_000020.11:31979686:G:T
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.31979687G>T, NC_000020.10:g.30567490G>T

Select item 149036191511.

rs1490361915 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 20:31979766 (GRCh38)
20:30567569 (GRCh37)
Canonical SPDI:: NC_000020.11:31979765:C:A,NC_000020.11:31979765:C:G,NC_000020.11:31979765:C:T
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0./0 (GnomAD)
G=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.31979766C>A, NC_000020.11:g.31979766C>G, NC_000020.11:g.31979766C>T, NC_000020.10:g.30567569C>A, NC_000020.10:g.30567569C>G, NC_000020.10:g.30567569C>T

Select item 149032501912.

rs1490325019 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31973911 (GRCh38)
20:30561714 (GRCh37)
Canonical SPDI:: NC_000020.11:31973910:G:A
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.31973911G>A, NC_000020.10:g.30561714G>A

Select item 149031729913.

rs1490317299 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 20:31988128 (GRCh38)
20:30575932 (GRCh37)
Canonical SPDI:: NC_000020.11:31988128:GG:GGG
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GGG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.31988130dup, NC_000020.10:g.30575933dup

Select item 149031139514.

rs1490311395 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31995173 (GRCh38)
20:30582976 (GRCh37)
Canonical SPDI:: NC_000020.11:31995172:G:A
Gene:: XKR7 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
HGVS:: NC_000020.11:g.31995173G>A, NC_000020.10:g.30582976G>A, NM_001011718.2:c.690G>A, NM_001011718.1:c.690G>A, NP_001011718.1:p.Met230Ile

Select item 149010065215.

rs1490100652 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31980515 (GRCh38)
20:30568318 (GRCh37)
Canonical SPDI:: NC_000020.11:31980514:G:A
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000020.11:g.31980515G>A, NC_000020.10:g.30568318G>A

Select item 148987921716.

rs1489879217 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:31988685 (GRCh38)
20:30576488 (GRCh37)
Canonical SPDI:: NC_000020.11:31988684:A:G
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.31988685A>G, NC_000020.10:g.30576488A>G

Select item 148980968017.

rs1489809680 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31996596 (GRCh38)
20:30584399 (GRCh37)
Canonical SPDI:: NC_000020.11:31996595:G:A
Gene:: XKR7 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.31996596G>A, NC_000020.10:g.30584399G>A, NM_001011718.2:c.879G>A, NM_001011718.1:c.879G>A

Select item 148976585318.

rs1489765853 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 20:31972228 (GRCh38)
20:30560031 (GRCh37)
Canonical SPDI:: NC_000020.11:31972227:CCC:CC
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.31972230del, NC_000020.10:g.30560033del, NG_080932.1:g.165del

Select item 148956291219.

rs1489562912 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:31985762 (GRCh38)
20:30573565 (GRCh37)
Canonical SPDI:: NC_000020.11:31985761:G:A
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000009/1 (GnomAD)
A=0.000248/7 (TOMMO)
A=0.000781/5 (1000Genomes)
A=0.001092/2 (Korea1K)
HGVS:: NC_000020.11:g.31985762G>A, NC_000020.10:g.30573565G>A

Select item 148951563320.

rs1489515633 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 20:31970611 (GRCh38)
20:30558414 (GRCh37)
Canonical SPDI:: NC_000020.11:31970610:G:A,NC_000020.11:31970610:G:T
Gene:: XKR7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000020.11:g.31970611G>A, NC_000020.11:g.31970611G>T, NC_000020.10:g.30558414G>A, NC_000020.10:g.30558414G>T

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