SNP Links for Gene (Select 3446) - SNP

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Select item 14910773441.

rs1491077344 has merged into rs35127707 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,T,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT [Show Flanks]
Chromosome:: 9:21208520 (GRCh38)
9:21208519 (GRCh37)
Canonical SPDI:: NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000009.12:21208510:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT
Gene:: IFNA10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.21208520_21208528del, NC_000009.12:g.21208521_21208528del, NC_000009.12:g.21208524_21208528del, NC_000009.12:g.21208525_21208528del, NC_000009.12:g.21208526_21208528del, NC_000009.12:g.21208527_21208528del, NC_000009.12:g.21208528del, NC_000009.12:g.21208528dup, NC_000009.12:g.21208527_21208528dup, NC_000009.12:g.21208526_21208528dup, NC_000009.12:g.21208525_21208528dup, NC_000009.11:g.21208519_21208527del, NC_000009.11:g.21208520_21208527del, NC_000009.11:g.21208523_21208527del, NC_000009.11:g.21208524_21208527del, NC_000009.11:g.21208525_21208527del, NC_000009.11:g.21208526_21208527del, NC_000009.11:g.21208527del, NC_000009.11:g.21208527dup, NC_000009.11:g.21208526_21208527dup, NC_000009.11:g.21208525_21208527dup, NC_000009.11:g.21208524_21208527dup

Select item 14907257842.

rs1490725784 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:21208940 (GRCh38)
9:21208939 (GRCh37)
Canonical SPDI:: NC_000009.12:21208939:C:A,NC_000009.12:21208939:C:T
Gene:: IFNA10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.003554/65 (ALFA)
T=0.000019/2 (GnomAD)
A=0.000177/5 (TOMMO)
A=0.090411/264 (KOREAN)
C=0.5/12 (SGDP_PRJ)
HGVS:: NC_000009.12:g.21208940C>A, NC_000009.12:g.21208940C>T, NC_000009.11:g.21208939C>A, NC_000009.11:g.21208939C>T

Select item 14906948653.

rs1490694865 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:21208430 (GRCh38)
9:21208429 (GRCh37)
Canonical SPDI:: NC_000009.12:21208429:C:G,NC_000009.12:21208429:C:T
Gene:: IFNA10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.21208430C>G, NC_000009.12:g.21208430C>T, NC_000009.11:g.21208429C>G, NC_000009.11:g.21208429C>T

Select item 14901879254.

rs1490187925 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 9:21208930 (GRCh38)
9:21208929 (GRCh37)
Canonical SPDI:: NC_000009.12:21208929:A:G,NC_000009.12:21208929:A:T
Gene:: IFNA10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.21208930A>G, NC_000009.12:g.21208930A>T, NC_000009.11:g.21208929A>G, NC_000009.11:g.21208929A>T

Select item 14889491215.

rs1488949121 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:21208835 (GRCh38)
9:21208834 (GRCh37)
Canonical SPDI:: NC_000009.12:21208834:T:A,NC_000009.12:21208834:T:C
Gene:: IFNA10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.21208835T>A, NC_000009.12:g.21208835T>C, NC_000009.11:g.21208834T>A, NC_000009.11:g.21208834T>C

Select item 14885383736.

rs1488538373 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:21206304 (GRCh38)
9:21206303 (GRCh37)
Canonical SPDI:: NC_000009.12:21206303:A:G
Gene:: IFNA10 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.21206304A>G, NC_000009.11:g.21206303A>G, NM_002171.2:c.*224T>C, NM_002171.1:c.*224T>C

Select item 14884797537.

rs1488479753 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:21206569 (GRCh38)
9:21206568 (GRCh37)
Canonical SPDI:: NC_000009.12:21206568:A:C
Gene:: IFNA10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.21206569A>C, NC_000009.11:g.21206568A>C, NM_002171.2:c.529T>G, NM_002171.1:c.529T>G, NP_002162.1:p.Phe177Val

Select item 14883854138.

rs1488385413 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:21208447 (GRCh38)
9:21208446 (GRCh37)
Canonical SPDI:: NC_000009.12:21208446:T:A,NC_000009.12:21208446:T:C
Gene:: IFNA10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.21208447T>A, NC_000009.12:g.21208447T>C, NC_000009.11:g.21208446T>A, NC_000009.11:g.21208446T>C

Select item 14882649839.

rs1488264983 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:21206389 (GRCh38)
9:21206388 (GRCh37)
Canonical SPDI:: NC_000009.12:21206388:C:A,NC_000009.12:21206388:C:T
Gene:: IFNA10 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
T=0.000177/3 (TOMMO)
A=0.000546/1 (Korea1K)
T=0.000684/2 (KOREAN)
HGVS:: NC_000009.12:g.21206389C>A, NC_000009.12:g.21206389C>T, NC_000009.11:g.21206388C>A, NC_000009.11:g.21206388C>T, NM_002171.2:c.*139G>T, NM_002171.2:c.*139G>A, NM_002171.1:c.*139G>T, NM_002171.1:c.*139G>A

Select item 148800348910.

rs1488003489 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 9:21208092 (GRCh38)
9:21208091 (GRCh37)
Canonical SPDI:: NC_000009.12:21208091:T:A,NC_000009.12:21208091:T:G
Gene:: IFNA10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.21208092T>A, NC_000009.12:g.21208092T>G, NC_000009.11:g.21208091T>A, NC_000009.11:g.21208091T>G

Select item 148711107111.

rs1487111071 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:21206247 (GRCh38)
9:21206246 (GRCh37)
Canonical SPDI:: NC_000009.12:21206246:A:C
Gene:: IFNA10 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.21206247A>C, NC_000009.11:g.21206246A>C, NM_002171.2:c.*281T>G, NM_002171.1:c.*281T>G

Select item 148681348912.

rs1486813489 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:21206631 (GRCh38)
9:21206630 (GRCh37)
Canonical SPDI:: NC_000009.12:21206630:T:C
Gene:: IFNA10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000009.12:g.21206631T>C, NC_000009.11:g.21206630T>C, NM_002171.2:c.467A>G, NM_002171.1:c.467A>G, NP_002162.1:p.Glu156Gly

Select item 148585532113.

rs1485855321 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:21207465 (GRCh38)
9:21207464 (GRCh37)
Canonical SPDI:: NC_000009.12:21207464:T:A,NC_000009.12:21207464:T:C
Gene:: IFNA10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.21207465T>A, NC_000009.12:g.21207465T>C, NC_000009.11:g.21207464T>A, NC_000009.11:g.21207464T>C

Select item 148424144414.

rs1484241444 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:21207117 (GRCh38)
9:21207116 (GRCh37)
Canonical SPDI:: NC_000009.12:21207116:C:A,NC_000009.12:21207116:C:T
Gene:: IFNA10 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.21207117C>A, NC_000009.12:g.21207117C>T, NC_000009.11:g.21207116C>A, NC_000009.11:g.21207116C>T, NM_002171.2:c.-20G>T, NM_002171.2:c.-20G>A, NM_002171.1:c.-20G>T, NM_002171.1:c.-20G>A

Select item 148369953115.

rs1483699531 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:21205917 (GRCh38)
9:21205916 (GRCh37)
Canonical SPDI:: NC_000009.12:21205916:C:G,NC_000009.12:21205916:C:T
Gene:: IFNA10 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.21205917C>G, NC_000009.12:g.21205917C>T, NC_000009.11:g.21205916C>G, NC_000009.11:g.21205916C>T

Select item 148250062216.

rs1482500622 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:21206381 (GRCh38)
9:21206380 (GRCh37)
Canonical SPDI:: NC_000009.12:21206380:C:A,NC_000009.12:21206380:C:T
Gene:: IFNA10 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00055/1 (Korea1K)
HGVS:: NC_000009.12:g.21206381C>A, NC_000009.12:g.21206381C>T, NC_000009.11:g.21206380C>A, NC_000009.11:g.21206380C>T, NM_002171.2:c.*147G>T, NM_002171.2:c.*147G>A, NM_002171.1:c.*147G>T, NM_002171.1:c.*147G>A

Select item 148206619717.

rs1482066197 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:21206184 (GRCh38)
9:21206183 (GRCh37)
Canonical SPDI:: NC_000009.12:21206183:T:G
Gene:: IFNA10 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.21206184T>G, NC_000009.11:g.21206183T>G, NM_002171.2:c.*344A>C, NM_002171.1:c.*344A>C

Select item 148202790718.

rs1482027907 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 9:21206026 (GRCh38)
9:21206025 (GRCh37)
Canonical SPDI:: NC_000009.12:21206025:G:C,NC_000009.12:21206025:G:T
Gene:: IFNA10 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.21206026G>C, NC_000009.12:g.21206026G>T, NC_000009.11:g.21206025G>C, NC_000009.11:g.21206025G>T

Select item 148187659219.

rs1481876592 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:21208566 (GRCh38)
9:21208565 (GRCh37)
Canonical SPDI:: NC_000009.12:21208565:G:C
Gene:: IFNA10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.21208566G>C, NC_000009.11:g.21208565G>C

Select item 148159313020.

rs1481593130 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 9:21208947 (GRCh38)
9:21208946 (GRCh37)
Canonical SPDI:: NC_000009.12:21208946:A:G,NC_000009.12:21208946:A:T
Gene:: IFNA10 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.21208947A>G, NC_000009.12:g.21208947A>T, NC_000009.11:g.21208946A>G, NC_000009.11:g.21208946A>T

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