SNP Links for Gene (Select 347) - SNP

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Select item 14915875351.

rs1491587535 has merged into rs112935232 [Homo sapiens]

Variant type:: DELINS
Alleles:: CGCGCG>-,CG,CGCG,CGCGCGCG [Show Flanks]
Chromosome:: 3:195584157 (GRCh38)
3:195311028 (GRCh37)
Canonical SPDI:: NC_000003.12:195584152:CGCGCGCGCG:CGCG,NC_000003.12:195584152:CGCGCGCGCG:CGCGCG,NC_000003.12:195584152:CGCGCGCGCG:CGCGCGCG,NC_000003.12:195584152:CGCGCGCGCG:CGCGCGCGCGCG
Gene:: APOD (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CGCGCGCGCGCG=0./0 (ALFA)
-=0.00819/15 (Korea1K)
-=0.1/4 (GENOME_DK)
-=0.11235/433 (ALSPAC)
HGVS:: NC_000003.12:g.195584153CG[2], NC_000003.12:g.195584153CG[3], NC_000003.12:g.195584153CG[4], NC_000003.12:g.195584153CG[6], NC_000003.11:g.195311024CG[2], NC_000003.11:g.195311024CG[3], NC_000003.11:g.195311024CG[4], NC_000003.11:g.195311024CG[6], NM_001647.3:c.-319CG[2], NM_001647.3:c.-319CG[3], NM_001647.3:c.-319CG[4], NM_001647.3:c.-319CG[6]

Select item 14914459502.

rs1491445950 [Homo sapiens]

Variant type:: DEL
Alleles:: TC>- [Show Flanks]
Chromosome:: 3:195584152 (GRCh38)
3:195311023 (GRCh37)
Canonical SPDI:: NC_000003.12:195584151:TC:
Gene:: APOD (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00109/7 (1000Genomes)
-=0.00299/244 (GnomAD)
HGVS:: NC_000003.12:g.195584152_195584153del, NC_000003.11:g.195311023_195311024del, NM_001647.3:c.-310_-309del

Select item 14914035043.

rs1491403504 [Homo sapiens]

Variant type:: INS
Alleles:: ->TG [Show Flanks]
Chromosome:: 3:195584152 (GRCh38)
3:195311024 (GRCh37)
Canonical SPDI:: NC_000003.12:195584152::TG
Gene:: APOD (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TG=0.002951/35 (ALFA)
TG=0.003393/458 (GnomAD)
HGVS:: NC_000003.12:g.195584152_195584153insTG, NC_000003.11:g.195311023_195311024insTG, NM_001647.3:c.-310_-309insCA

Select item 14907100964.

rs1490710096 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 3:195585364 (GRCh38)
3:195312235 (GRCh37)
Canonical SPDI:: NC_000003.12:195585363:T:A,NC_000003.12:195585363:T:C
Gene:: APOD (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000003.12:g.195585364T>A, NC_000003.12:g.195585364T>C, NC_000003.11:g.195312235T>A, NC_000003.11:g.195312235T>C

Select item 14906043485.

rs1490604348 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:195577842 (GRCh38)
3:195304713 (GRCh37)
Canonical SPDI:: NC_000003.12:195577841:T:C
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.195577842T>C, NC_000003.11:g.195304713T>C

Select item 14904810476.

rs1490481047 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:195584842 (GRCh38)
3:195311713 (GRCh37)
Canonical SPDI:: NC_000003.12:195584841:G:A
Gene:: APOD (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.195584842G>A, NC_000003.11:g.195311713G>A

Select item 14904197577.

rs1490419757 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 3:195573660 (GRCh38)
3:195300531 (GRCh37)
Canonical SPDI:: NC_000003.12:195573659:A:C,NC_000003.12:195573659:A:G
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000132/2 (ALFA)
G=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000446/2 (Estonian)
HGVS:: NC_000003.12:g.195573660A>C, NC_000003.12:g.195573660A>G, NC_000003.11:g.195300531A>C, NC_000003.11:g.195300531A>G

Select item 14903855028.

rs1490385502 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:195571819 (GRCh38)
3:195298690 (GRCh37)
Canonical SPDI:: NC_000003.12:195571818:C:T
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.195571819C>T, NC_000003.11:g.195298690C>T

Select item 14902331189.

rs1490233118 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:195569840 (GRCh38)
3:195296711 (GRCh37)
Canonical SPDI:: NC_000003.12:195569839:C:T
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000003.12:g.195569840C>T, NC_000003.11:g.195296711C>T

Select item 149012980010.

rs1490129800 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:195578418 (GRCh38)
3:195305289 (GRCh37)
Canonical SPDI:: NC_000003.12:195578417:T:A
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.195578418T>A, NC_000003.11:g.195305289T>A

Select item 149011473011.

rs1490114730 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:195577211 (GRCh38)
3:195304082 (GRCh37)
Canonical SPDI:: NC_000003.12:195577210:A:G
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.195577211A>G, NC_000003.11:g.195304082A>G

Select item 148997614112.

rs1489976141 [Homo sapiens]

Variant type:: DELINS
Alleles:: AC>- [Show Flanks]
Chromosome:: 3:195585194 (GRCh38)
3:195312065 (GRCh37)
Canonical SPDI:: NC_000003.12:195585192:CAC:C
Gene:: APOD (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.195585194_195585195del, NC_000003.11:g.195312065_195312066del

Select item 148950717113.

rs1489507171 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:195577964 (GRCh38)
3:195304835 (GRCh37)
Canonical SPDI:: NC_000003.12:195577963:T:A
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.195577964T>A, NC_000003.11:g.195304835T>A

Select item 148945399514.

rs1489453995 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:195576836 (GRCh38)
3:195303707 (GRCh37)
Canonical SPDI:: NC_000003.12:195576835:A:G
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.195576836A>G, NC_000003.11:g.195303707A>G

Select item 148924055915.

rs1489240559 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:195585040 (GRCh38)
3:195311911 (GRCh37)
Canonical SPDI:: NC_000003.12:195585039:A:G
Gene:: APOD (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.195585040A>G, NC_000003.11:g.195311911A>G

Select item 148872659516.

rs1488726595 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 3:195571831 (GRCh38)
3:195298702 (GRCh37)
Canonical SPDI:: NC_000003.12:195571830:G:A,NC_000003.12:195571830:G:T
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.195571831G>A, NC_000003.12:g.195571831G>T, NC_000003.11:g.195298702G>A, NC_000003.11:g.195298702G>T

Select item 148847141917.

rs1488471419 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:195576349 (GRCh38)
3:195303220 (GRCh37)
Canonical SPDI:: NC_000003.12:195576348:T:C
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.195576349T>C, NC_000003.11:g.195303220T>C

Select item 148804366318.

rs1488043663 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:195575302 (GRCh38)
3:195302173 (GRCh37)
Canonical SPDI:: NC_000003.12:195575301:C:T
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.195575302C>T, NC_000003.11:g.195302173C>T

Select item 148797100319.

rs1487971003 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 3:195584070 (GRCh38)
3:195310941 (GRCh37)
Canonical SPDI:: NC_000003.12:195584069:C:G
Gene:: APOD (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000132/2 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000446/2 (Estonian)
HGVS:: NC_000003.12:g.195584070C>G, NC_000003.11:g.195310941C>G, NM_001647.3:c.-227G>C

Select item 148788007120.

rs1487880071 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:195578163 (GRCh38)
3:195305034 (GRCh37)
Canonical SPDI:: NC_000003.12:195578162:G:A
Gene:: APOD (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.195578163G>A, NC_000003.11:g.195305034G>A

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