SNP Links for Gene (Select 348249) - SNP

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Select item 14914506701.

rs1491450670 has merged into rs71366495 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTATTATTATTATT>-,ATT,ATTATT,ATTATTATT,ATTATTATTATT,ATTATTATTATTATTATT,ATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATTATTATT,ATTATTATTATTATTATTATTATTATTATTATT [Show Flanks]
Chromosome:: 17:35997177 (GRCh38)
17:34324213 (GRCh37)
Canonical SPDI:: NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATTATTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATTATTATTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATTATTATTATTATTATTATTATTATTATT,NC_000017.11:35997162:TTATTATTATTATTATTATTATTATTATT:TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATT
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTATTATTATTATTATT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.104826/404 (ALSPAC)
TTA=0.181446/133 (1000Genomes)
HGVS:: NC_000017.11:g.35997165ATT[4], NC_000017.11:g.35997165ATT[5], NC_000017.11:g.35997165ATT[6], NC_000017.11:g.35997165ATT[7], NC_000017.11:g.35997165ATT[8], NC_000017.11:g.35997165ATT[10], NC_000017.11:g.35997165ATT[11], NC_000017.11:g.35997165ATT[12], NC_000017.11:g.35997165ATT[13], NC_000017.11:g.35997165ATT[14], NC_000017.11:g.35997165ATT[15], NT_187614.1:g.231729ATT[4], NT_187614.1:g.231729ATT[5], NT_187614.1:g.231729ATT[6], NT_187614.1:g.231729ATT[7], NT_187614.1:g.231729ATT[8], NT_187614.1:g.231729ATT[10], NT_187614.1:g.231729ATT[11], NT_187614.1:g.231729ATT[12], NT_187614.1:g.231729ATT[13], NT_187614.1:g.231729ATT[14], NT_187614.1:g.231729ATT[15], NC_000017.10:g.34324201ATT[4], NC_000017.10:g.34324201ATT[5], NC_000017.10:g.34324201ATT[6], NC_000017.10:g.34324201ATT[7], NC_000017.10:g.34324201ATT[8], NC_000017.10:g.34324201ATT[10], NC_000017.10:g.34324201ATT[11], NC_000017.10:g.34324201ATT[12], NC_000017.10:g.34324201ATT[13], NC_000017.10:g.34324201ATT[14], NC_000017.10:g.34324201ATT[15]

Select item 14912078482.

rs1491207848 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 17:36000462 (GRCh38)
17:34327501 (GRCh37)
Canonical SPDI:: NC_000017.11:36000461:CA:
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview), LOC107985068 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.36000462_36000463del, NT_187614.1:g.235029_235030del, NC_000017.10:g.34327501_34327502del

Select item 14910606423.

rs1491060642 has merged into rs775816471 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>-,GAGA [Show Flanks]
Chromosome:: 17:36003539 (GRCh38)
17:34330582 (GRCh37)
Canonical SPDI:: NC_000017.11:36003536:GAGA:GA,NC_000017.11:36003536:GAGA:GAGAGA
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview), LOC107985068 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGAGA=0./0 (ALFA)
-=0.00055/1 (Korea1K)
-=0.12298/456 (TWINSUK)
-=0.1287/496 (ALSPAC)
HGVS:: NC_000017.11:g.36003537GA[1], NC_000017.11:g.36003537GA[3], NT_187614.1:g.238108GA[1], NT_187614.1:g.238108GA[3], NC_000017.10:g.34330580GA[1], NC_000017.10:g.34330580GA[3]

Select item 14908825814.

rs1490882581 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:35999411 (GRCh38)
17:34326447 (GRCh37)
Canonical SPDI:: NC_000017.11:35999410:A:G
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000066/1 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000017.11:g.35999411A>G, NT_187614.1:g.233975A>G, NC_000017.10:g.34326447A>G

Select item 14908489975.

rs1490848997 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:35986104 (GRCh38)
17:34313140 (GRCh37)
Canonical SPDI:: NC_000017.11:35986103:G:A
Gene:: CCL14 (Varview), CCL15-CCL14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.35986104G>A, NT_187614.1:g.220668G>A, NC_000017.10:g.34313140G>A

Select item 14907857286.

rs1490785728 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:36002360 (GRCh38)
17:34329406 (GRCh37)
Canonical SPDI:: NC_000017.11:36002359:T:C
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview), LOC107985068 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.36002360T>C, NT_187614.1:g.236934T>C, NC_000017.10:g.34329406T>C, XR_007065725.1:n.454T>C

Select item 14907699607.

rs1490769960 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:36003435 (GRCh38)
17:34330480 (GRCh37)
Canonical SPDI:: NC_000017.11:36003434:G:A
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview), LOC107985068 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.36003435G>A, NT_187614.1:g.238008G>A, NC_000017.10:g.34330480G>A

Select item 14906085618.

rs1490608561 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:36001839 (GRCh38)
17:34328885 (GRCh37)
Canonical SPDI:: NC_000017.11:36001838:G:A
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview), LOC107985068 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.36001839G>A, NT_187614.1:g.236413G>A, NC_000017.10:g.34328885G>A, NM_032965.5:c.-347C>T, NM_004167.4:c.-354C>T, NM_004166.4:c.-797C>T, NM_032965.4:c.-354C>T, NR_027921.3:n.200C>T, NR_027921.2:n.200C>T, NR_027922.3:n.200C>T, NR_027922.2:n.200C>T, NM_004167.3:c.-347C>T, NM_004166.3:c.-790C>T, NM_032964.3:c.-354C>T, NM_004167.2:c.-347C>T, NM_032964.2:c.-347C>T, NM_004166.2:c.-790C>T, NM_032964.1:c.-347C>T

Select item 14904700809.

rs1490470080 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:36000481 (GRCh38)
17:34327520 (GRCh37)
Canonical SPDI:: NC_000017.11:36000480:A:G
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview), LOC107985068 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000053/14 (TOPMED)
HGVS:: NC_000017.11:g.36000481A>G, NT_187614.1:g.235048A>G, NC_000017.10:g.34327520A>G

Select item 149041731510.

rs1490417315 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:35998533 (GRCh38)
17:34325569 (GRCh37)
Canonical SPDI:: NC_000017.11:35998532:C:T
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.35998533C>T, NT_187614.1:g.233097C>T, NC_000017.10:g.34325569C>T

Select item 149034188411.

rs1490341884 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 17:35984185 (GRCh38)
17:34311221 (GRCh37)
Canonical SPDI:: NC_000017.11:35984184:A:C
Gene:: CCL14 (Varview), CCL15-CCL14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.35984185A>C, NT_187614.1:g.218749A>C, NC_000017.10:g.34311221A>C

Select item 149014395212.

rs1490143952 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:36002603 (GRCh38)
17:34329649 (GRCh37)
Canonical SPDI:: NC_000017.11:36002602:T:C
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview), LOC107985068 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000162/3 (ALFA)
C=0.000029/4 (GnomAD)
C=0.000446/2 (Estonian)
HGVS:: NC_000017.11:g.36002603T>C, NT_187614.1:g.237177T>C, NC_000017.10:g.34329649T>C, XR_007065725.1:n.697T>C

Select item 149006789813.

rs1490067898 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:36000339 (GRCh38)
17:34327378 (GRCh37)
Canonical SPDI:: NC_000017.11:36000338:C:G
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview), LOC107985068 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.36000339C>G, NT_187614.1:g.234906C>G, NC_000017.10:g.34327378C>G

Select item 149000949014.

rs1490009490 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:35995858 (GRCh38)
17:34322894 (GRCh37)
Canonical SPDI:: NC_000017.11:35995857:G:A
Gene:: CCL15-CCL14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.35995858G>A, NT_187614.1:g.230422G>A, NC_000017.10:g.34322894G>A

Select item 148952733015.

rs1489527330 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:35997217 (GRCh38)
17:34324253 (GRCh37)
Canonical SPDI:: NC_000017.11:35997216:C:A
Gene:: CCL15 (Varview), CCL15-CCL14 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.35997217C>A, NT_187614.1:g.231781C>A, NC_000017.10:g.34324253C>A

Select item 148916941216.

rs1489169412 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:35992115 (GRCh38)
17:34319151 (GRCh37)
Canonical SPDI:: NC_000017.11:35992114:G:C
Gene:: CCL15-CCL14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.35992115G>C, NT_187614.1:g.226679G>C, NC_000017.10:g.34319151G>C

Select item 148915223917.

rs1489152239 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:35984414 (GRCh38)
17:34311450 (GRCh37)
Canonical SPDI:: NC_000017.11:35984413:T:C
Gene:: CCL14 (Varview), CCL15-CCL14 (Varview)
Functional Consequence:: non_coding_transcript_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.35984414T>C, NT_187614.1:g.218978T>C, NC_000017.10:g.34311450T>C, NM_032962.5:c.166A>G, NM_032962.4:c.166A>G, NM_032963.4:c.118A>G, NM_032963.3:c.118A>G, NM_004167.4:c.*267A>G, NM_004166.4:c.118A>G, NR_027921.3:n.1155A>G, NR_027921.2:n.1162A>G, NR_027922.3:n.1107A>G, NR_027922.2:n.1114A>G, NM_004167.3:c.*267A>G, NM_004166.3:c.118A>G, NM_032964.3:c.*219A>G, NM_004167.2:c.*267A>G, NM_032964.2:c.*219A>G, NM_004166.2:c.118A>G, NM_032964.1:c.*219A>G, NM_004167.1:c.*267A>G, NM_004166.1:c.118A>G, NP_116738.1:p.Thr56Ala, NP_116739.1:p.Thr40Ala

Select item 148907222418.

rs1489072224 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:35996179 (GRCh38)
17:34323215 (GRCh37)
Canonical SPDI:: NC_000017.11:35996178:C:T
Gene:: CCL15-CCL14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000108/2 (ALFA)
T=0.000026/7 (TOPMED)
T=0.000036/5 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000017.11:g.35996179C>T, NT_187614.1:g.230743C>T, NC_000017.10:g.34323215C>T

Select item 148896008619.

rs1488960086 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:35993743 (GRCh38)
17:34320779 (GRCh37)
Canonical SPDI:: NC_000017.11:35993742:C:T
Gene:: CCL15-CCL14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.35993743C>T, NT_187614.1:g.228307C>T, NC_000017.10:g.34320779C>T

Select item 148830930320.

rs1488309303 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:35984691 (GRCh38)
17:34311727 (GRCh37)
Canonical SPDI:: NC_000017.11:35984690:G:C
Gene:: CCL14 (Varview), CCL15-CCL14 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.35984691G>C, NT_187614.1:g.219255G>C, NC_000017.10:g.34311727G>C

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