SNP Links for Gene (Select 349334) - SNP

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Select item 14909915631.

rs1490991563 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:65735918 (GRCh38)
9:70430127 (GRCh37)
Canonical SPDI:: NC_000009.12:65735917:A:G
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.36739/4358 (ALFA)
G=0.36321/2326 (1000Genomes)
G=0.40666/745 (Korea1K)
G=0.43117/12184 (TOMMO)
HGVS:: NC_000009.12:g.65735918A>G, NC_000009.11:g.70430127T>C

Select item 14909562722.

rs1490956272 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:65736620 (GRCh38)
9:70429425 (GRCh37)
Canonical SPDI:: NC_000009.12:65736619:A:G
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.65736620A>G, NC_000009.11:g.70429425T>C, NM_199244.2:c.-526A>G, NM_001099279.1:c.-526A>G

Select item 14905025303.

rs1490502530 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 9:65736165 (GRCh38)
9:70429880 (GRCh37)
Canonical SPDI:: NC_000009.12:65736164:T:C,NC_000009.12:65736164:T:G
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.65736165T>C, NC_000009.12:g.65736165T>G, NC_000009.11:g.70429880A>G, NC_000009.11:g.70429880A>C

Select item 14904674664.

rs1490467466 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:65736831 (GRCh38)
9:70429214 (GRCh37)
Canonical SPDI:: NC_000009.12:65736830:C:T
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000253/3 (ALFA)
T=0.000114/16 (GnomAD)
HGVS:: NC_000009.12:g.65736831C>T, NC_000009.11:g.70429214G>A, NM_199244.2:c.-315C>T, NM_001099279.1:c.-315C>T

Select item 14901385225.

rs1490138522 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:65736248 (GRCh38)
9:70429797 (GRCh37)
Canonical SPDI:: NC_000009.12:65736247:C:A
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.65736248C>A, NC_000009.11:g.70429797G>T

Select item 14896679826.

rs1489667982 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 9:65737107 (GRCh38)
9:70428938 (GRCh37)
Canonical SPDI:: NC_000009.12:65737106:G:A,NC_000009.12:65737106:G:C,NC_000009.12:65737106:G:T
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
T=0.000004/1 (TOPMED)
C=0.000071/2 (TOMMO)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000009.12:g.65737107G>A, NC_000009.12:g.65737107G>C, NC_000009.12:g.65737107G>T, NC_000009.11:g.70428938C>T, NC_000009.11:g.70428938C>G, NC_000009.11:g.70428938C>A, NM_199244.2:c.-39G>A, NM_199244.2:c.-39G>C, NM_199244.2:c.-39G>T, NM_001099279.1:c.-39G>A, NM_001099279.1:c.-39G>C, NM_001099279.1:c.-39G>T

Select item 14895471107.

rs1489547110 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:65735561 (GRCh38)
9:70430484 (GRCh37)
Canonical SPDI:: NC_000009.12:65735560:G:A,NC_000009.12:65735560:G:T
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.65735561G>A, NC_000009.12:g.65735561G>T, NC_000009.11:g.70430484C>T, NC_000009.11:g.70430484C>A

Select item 14888871928.

rs1488887192 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:65735575 (GRCh38)
9:70430470 (GRCh37)
Canonical SPDI:: NC_000009.12:65735574:C:A,NC_000009.12:65735574:C:T
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.002458/328 (GnomAD)
T=0.0046/130 (TOMMO)
T=0.004841/31 (1000Genomes)
HGVS:: NC_000009.12:g.65735575C>A, NC_000009.12:g.65735575C>T, NC_000009.11:g.70430470G>T, NC_000009.11:g.70430470G>A

Select item 14888570509.

rs1488857050 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:65735984 (GRCh38)
9:70430061 (GRCh37)
Canonical SPDI:: NC_000009.12:65735983:G:C
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.65735984G>C, NC_000009.11:g.70430061C>G

Select item 148863110310.

rs1488631103 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:65735622 (GRCh38)
9:70430423 (GRCh37)
Canonical SPDI:: NC_000009.12:65735621:C:G,NC_000009.12:65735621:C:T
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000253/3 (ALFA)
G=0.000156/1 (1000Genomes)
T=0.000262/33 (GnomAD)
HGVS:: NC_000009.12:g.65735622C>G, NC_000009.12:g.65735622C>T, NC_000009.11:g.70430423G>C, NC_000009.11:g.70430423G>A

Select item 148797709211.

rs1487977092 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:65735188 (GRCh38)
9:70430857 (GRCh37)
Canonical SPDI:: NC_000009.12:65735187:G:C
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.65735188G>C, NC_000009.11:g.70430857C>G

Select item 148757158212.

rs1487571582 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:65737283 (GRCh38)
9:70428762 (GRCh37)
Canonical SPDI:: NC_000009.12:65737282:G:A,NC_000009.12:65737282:G:C
Gene:: FOXD4L4 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000009.12:g.65737283G>A, NC_000009.12:g.65737283G>C, NC_000009.11:g.70428762C>T, NC_000009.11:g.70428762C>G, NM_199244.3:c.138G>A, NM_199244.3:c.138G>C, NM_199244.2:c.138G>A, NM_199244.2:c.138G>C, NM_001099279.1:c.138G>A, NM_001099279.1:c.138G>C

Select item 148746402313.

rs1487464023 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 9:65738821 (GRCh38)
9:70427224 (GRCh37)
Canonical SPDI:: NC_000009.12:65738819:TCT:T
Gene:: FOXD4L4 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.65738821_65738822del, NC_000009.11:g.70427224_70427225del, NM_199244.2:c.*425_*426del, NM_001099279.1:c.*425_*426del

Select item 148699628414.

rs1486996284 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:65735384 (GRCh38)
9:70430661 (GRCh37)
Canonical SPDI:: NC_000009.12:65735383:G:A
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000043/6 (GnomAD)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000009.12:g.65735384G>A, NC_000009.11:g.70430661C>T

Select item 148681135915.

rs1486811359 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:65738199 (GRCh38)
9:70427846 (GRCh37)
Canonical SPDI:: NC_000009.12:65738198:A:G
Gene:: FOXD4L4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.001012/12 (ALFA)
G=0.000996/131 (GnomAD)
G=0.001249/8 (1000Genomes)
HGVS:: NC_000009.12:g.65738199A>G, NC_000009.11:g.70427846T>C, NM_199244.3:c.1054A>G, NM_199244.2:c.1054A>G, NM_001099279.1:c.1054A>G, NP_954714.2:p.Thr352Ala

Select item 148577917116.

rs1485779171 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:65735638 (GRCh38)
9:70430407 (GRCh37)
Canonical SPDI:: NC_000009.12:65735637:C:T
Gene:: FOXD4L4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.00008/1 (ALFA)
T=0.00003/2 (GnomAD)
HGVS:: NC_000009.12:g.65735638C>T, NC_000009.11:g.70430407G>A

Select item 148557431117.

rs1485574311 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:65737455 (GRCh38)
9:70428590 (GRCh37)
Canonical SPDI:: NC_000009.12:65737454:C:A,NC_000009.12:65737454:C:T
Gene:: FOXD4L4 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.65737455C>A, NC_000009.12:g.65737455C>T, NC_000009.11:g.70428590G>T, NC_000009.11:g.70428590G>A, NM_199244.3:c.310C>A, NM_199244.3:c.310C>T, NM_199244.2:c.310C>A, NM_199244.2:c.310C>T, NM_001099279.1:c.310C>A, NM_001099279.1:c.310C>T, NP_954714.2:p.Arg104Trp

Select item 148550362418.

rs1485503624 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:65737612 (GRCh38)
9:70428433 (GRCh37)
Canonical SPDI:: NC_000009.12:65737611:T:C
Gene:: FOXD4L4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: C=0.00008/1 (ALFA)
HGVS:: NC_000009.12:g.65737612T>C, NC_000009.11:g.70428433A>G, NM_199244.3:c.467T>C, NM_199244.2:c.467T>C, NM_001099279.1:c.467T>C, NP_954714.2:p.Ile156Thr

Select item 148547411619.

rs1485474116 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:65738188 (GRCh38)
9:70427857 (GRCh37)
Canonical SPDI:: NC_000009.12:65738187:C:A
Gene:: FOXD4L4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/1 (GnomAD)
HGVS:: NC_000009.12:g.65738188C>A, NC_000009.11:g.70427857G>T, NM_199244.3:c.1043C>A, NM_199244.2:c.1043C>A, NM_001099279.1:c.1043C>A, NP_954714.2:p.Pro348Gln

Select item 148514771020.

rs1485147710 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:65737891 (GRCh38)
9:70428154 (GRCh37)
Canonical SPDI:: NC_000009.12:65737890:C:T
Gene:: FOXD4L4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00194/23 (ALFA)
T=0.00156/10 (1000Genomes)
HGVS:: NC_000009.12:g.65737891C>T, NC_000009.11:g.70428154G>A, NM_199244.3:c.746C>T, NM_199244.2:c.746C>T, NM_001099279.1:c.746C>T, NP_954714.2:p.Ala249Val

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