SNP Links for Gene (Select 354) - SNP

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Select item 14914221651.

rs1491422165 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->C
Chromosome:: no mapping
Canonical SPDI:

Select item 14914049642.

rs1491404964 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 19:50853973 (GRCh38)
19:51357229 (GRCh37)
Canonical SPDI:: NC_000019.10:50853972:AT:
Gene:: KLK3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000038/4 (GnomAD)
HGVS:: NC_000019.10:g.50853973_50853974del, NC_000019.9:g.51357229_51357230del, NG_011653.1:g.4059_4060del, NG_042790.1:g.4911_4912del

Select item 14913353833.

rs1491335383 [Homo sapiens]

Variant type:: INS
Alleles:: ->AAAAAAAAAAAAAAAAAAAG,AAAAAAAAAAAAAAAG,AAAAAAAAAAAAAAG,AAAAAAAAAAAG,AAAAAAAAAAG,AAAAAAAAAG,AAAAAAAAG,AAAAAAAG,AAAAAAG,AAAAAG,AAAAG,AAAG,AAG,AG [Show Flanks]
Chromosome:: 19:50857183 (GRCh38)
19:51360440 (GRCh37)
Canonical SPDI:: NC_000019.10:50857183::AAAAAAAAAAAAAAAAAAAG,NC_000019.10:50857183::AAAAAAAAAAAAAAAG,NC_000019.10:50857183::AAAAAAAAAAAAAAG,NC_000019.10:50857183::AAAAAAAAAAAG,NC_000019.10:50857183::AAAAAAAAAAG,NC_000019.10:50857183::AAAAAAAAAG,NC_000019.10:50857183::AAAAAAAAG,NC_000019.10:50857183::AAAAAAAG,NC_000019.10:50857183::AAAAAAG,NC_000019.10:50857183::AAAAAG,NC_000019.10:50857183::AAAAG,NC_000019.10:50857183::AAAG,NC_000019.10:50857183::AAG,NC_000019.10:50857183::AG
Gene:: KLK3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAG=0./0 (ALFA)
HGVS:: NC_000019.10:g.50857183_50857184insAAAAAAAAAAAAAAAAAAAG, NC_000019.10:g.50857183_50857184insAAAAAAAAAAAAAAAG, NC_000019.10:g.50857183_50857184insAAAAAAAAAAAAAAG, NC_000019.10:g.50857183_50857184insAAAAAAAAAAAG, NC_000019.10:g.50857183_50857184insAAAAAAAAAAG, NC_000019.10:g.50857183_50857184insAAAAAAAAAG, NC_000019.10:g.50857183_50857184insAAAAAAAAG, NC_000019.10:g.50857183_50857184insAAAAAAAG, NC_000019.10:g.50857183_50857184insAAAAAAG, NC_000019.10:g.50857183_50857184insAAAAAG, NC_000019.10:g.50857183_50857184insAAAAG, NC_000019.10:g.50857183_50857184insAAAG, NC_000019.10:g.50857183_50857184insAAG, NC_000019.10:g.50857183_50857184insAG, NC_000019.9:g.51360439_51360440insAAAAAAAAAAAAAAAAAAAG, NC_000019.9:g.51360439_51360440insAAAAAAAAAAAAAAAG, NC_000019.9:g.51360439_51360440insAAAAAAAAAAAAAAG, NC_000019.9:g.51360439_51360440insAAAAAAAAAAAG, NC_000019.9:g.51360439_51360440insAAAAAAAAAAG, NC_000019.9:g.51360439_51360440insAAAAAAAAAG, NC_000019.9:g.51360439_51360440insAAAAAAAAG, NC_000019.9:g.51360439_51360440insAAAAAAAG, NC_000019.9:g.51360439_51360440insAAAAAAG, NC_000019.9:g.51360439_51360440insAAAAAG, NC_000019.9:g.51360439_51360440insAAAAG, NC_000019.9:g.51360439_51360440insAAAG, NC_000019.9:g.51360439_51360440insAAG, NC_000019.9:g.51360439_51360440insAG, NG_011653.1:g.7269_7270insAAAAAAAAAAAAAAAAAAAG, NG_011653.1:g.7269_7270insAAAAAAAAAAAAAAAG, NG_011653.1:g.7269_7270insAAAAAAAAAAAAAAG, NG_011653.1:g.7269_7270insAAAAAAAAAAAG, NG_011653.1:g.7269_7270insAAAAAAAAAAG, NG_011653.1:g.7269_7270insAAAAAAAAAG, NG_011653.1:g.7269_7270insAAAAAAAAG, NG_011653.1:g.7269_7270insAAAAAAAG, NG_011653.1:g.7269_7270insAAAAAAG, NG_011653.1:g.7269_7270insAAAAAG, NG_011653.1:g.7269_7270insAAAAG, NG_011653.1:g.7269_7270insAAAG, NG_011653.1:g.7269_7270insAAG, NG_011653.1:g.7269_7270insAG

Select item 14913038744.

rs1491303874 has merged into rs553358220 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT [Show Flanks]
Chromosome:: 19:50853490 (GRCh38)
19:51356746 (GRCh37)
Canonical SPDI:: NC_000019.10:50853480:TTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000019.10:50853480:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:50853480:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:50853480:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000019.10:50853480:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:50853480:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:50853480:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:50853480:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:50853480:TTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT
Gene:: KLK3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
-=0.2151/1077 (1000Genomes)
HGVS:: NC_000019.10:g.50853490_50853497del, NC_000019.10:g.50853494_50853497del, NC_000019.10:g.50853495_50853497del, NC_000019.10:g.50853496_50853497del, NC_000019.10:g.50853497del, NC_000019.10:g.50853497dup, NC_000019.10:g.50853496_50853497dup, NC_000019.10:g.50853495_50853497dup, NC_000019.10:g.50853494_50853497dup, NC_000019.9:g.51356746_51356753del, NC_000019.9:g.51356750_51356753del, NC_000019.9:g.51356751_51356753del, NC_000019.9:g.51356752_51356753del, NC_000019.9:g.51356753del, NC_000019.9:g.51356753dup, NC_000019.9:g.51356752_51356753dup, NC_000019.9:g.51356751_51356753dup, NC_000019.9:g.51356750_51356753dup, NG_011653.1:g.3576_3583del, NG_011653.1:g.3580_3583del, NG_011653.1:g.3581_3583del, NG_011653.1:g.3582_3583del, NG_011653.1:g.3583del, NG_011653.1:g.3583dup, NG_011653.1:g.3582_3583dup, NG_011653.1:g.3581_3583dup, NG_011653.1:g.3580_3583dup, NG_042790.1:g.4428_4435del, NG_042790.1:g.4432_4435del, NG_042790.1:g.4433_4435del, NG_042790.1:g.4434_4435del, NG_042790.1:g.4435del, NG_042790.1:g.4435dup, NG_042790.1:g.4434_4435dup, NG_042790.1:g.4433_4435dup, NG_042790.1:g.4432_4435dup

Select item 14911899805.

rs1491189980 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 19:50857184 (GRCh38)
19:51360440 (GRCh37)
Canonical SPDI:: NC_000019.10:50857182:AGA:A
Gene:: KLK3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.002445/29 (ALFA)
-=0.002306/304 (GnomAD)
HGVS:: NC_000019.10:g.50857184_50857185del, NC_000019.9:g.51360440_51360441del, NG_011653.1:g.7270_7271del

Select item 14902362656.

rs1490236265 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:50853433 (GRCh38)
19:51356689 (GRCh37)
Canonical SPDI:: NC_000019.10:50853432:G:A
Gene:: KLK3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000019.10:g.50853433G>A, NC_000019.9:g.51356689G>A, NG_011653.1:g.3519G>A, NG_042790.1:g.4371G>A

Select item 14901706977.

rs1490170697 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:50860318 (GRCh38)
19:51363574 (GRCh37)
Canonical SPDI:: NC_000019.10:50860317:C:T
Gene:: KLK3 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.50860318C>T, NC_000019.9:g.51363574C>T, NG_011653.1:g.10404C>T, NM_001648.2:c.*191C>T, NM_001030047.1:c.*702C>T, NM_001030048.1:c.*191C>T, NM_001030049.1:c.*191C>T

Select item 14895988898.

rs1489598889 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:50858695 (GRCh38)
19:51361951 (GRCh37)
Canonical SPDI:: NC_000019.10:50858694:C:T
Gene:: KLK3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.50858695C>T, NC_000019.9:g.51361951C>T, NG_011653.1:g.8781C>T

Select item 14895398959.

rs1489539895 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 19:50859776 (GRCh38)
19:51363032 (GRCh37)
Canonical SPDI:: NC_000019.10:50859775:C:A,NC_000019.10:50859775:C:G
Gene:: KLK3 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.50859776C>A, NC_000019.10:g.50859776C>G, NC_000019.9:g.51363032C>A, NC_000019.9:g.51363032C>G, NG_011653.1:g.9862C>A, NG_011653.1:g.9862C>G, NM_001030047.1:c.*160C>A, NM_001030047.1:c.*160C>G

Select item 148926421410.

rs1489264214 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:50859977 (GRCh38)
19:51363233 (GRCh37)
Canonical SPDI:: NC_000019.10:50859976:T:C
Gene:: KLK3 (Varview)
Functional Consequence:: synonymous_variant,3_prime_UTR_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.50859977T>C, NC_000019.9:g.51363233T>C, NG_011653.1:g.10063T>C, NM_001648.2:c.636T>C, NM_001030047.1:c.*361T>C, NM_001030048.1:c.507T>C, NM_001030049.1:c.513T>C

Select item 148920237511.

rs1489202375 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:50857125 (GRCh38)
19:51360381 (GRCh37)
Canonical SPDI:: NC_000019.10:50857124:T:C
Gene:: KLK3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
C=0.000035/1 (TOMMO)
HGVS:: NC_000019.10:g.50857125T>C, NC_000019.9:g.51360381T>C, NG_011653.1:g.7211T>C

Select item 148887332412.

rs1488873324 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:50857766 (GRCh38)
19:51361022 (GRCh37)
Canonical SPDI:: NC_000019.10:50857765:C:T
Gene:: KLK3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.50857766C>T, NC_000019.9:g.51361022C>T, NG_011653.1:g.7852C>T

Select item 148865659513.

rs1488656595 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 19:50853423 (GRCh38)
19:51356679 (GRCh37)
Canonical SPDI:: NC_000019.10:50853422:AA:A
Gene:: KLK3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.50853424del, NC_000019.9:g.51356680del, NG_011653.1:g.3510del, NG_042790.1:g.4362del

Select item 148772862314.

rs1487728623 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:50854557 (GRCh38)
19:51357813 (GRCh37)
Canonical SPDI:: NC_000019.10:50854556:T:C
Gene:: KLK3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.50854557T>C, NC_000019.9:g.51357813T>C, NG_011653.1:g.4643T>C, NG_042790.1:g.5495T>C

Select item 148767180315.

rs1487671803 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:50855101 (GRCh38)
19:51358357 (GRCh37)
Canonical SPDI:: NC_000019.10:50855100:G:T
Gene:: KLK3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.50855101G>T, NC_000019.9:g.51358357G>T, NG_011653.1:g.5187G>T, NM_145864.1:c.146G>T

Select item 148736798516.

rs1487367985 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 19:50854643 (GRCh38)
19:51357899 (GRCh37)
Canonical SPDI:: NC_000019.10:50854642:T:
Gene:: KLK3 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000019.10:g.50854643del, NC_000019.9:g.51357899del, NG_011653.1:g.4729del, NG_042790.1:g.5581del

Select item 148684022117.

rs1486840221 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:50855986 (GRCh38)
19:51359242 (GRCh37)
Canonical SPDI:: NC_000019.10:50855985:C:T
Gene:: KLK3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.50855986C>T, NC_000019.9:g.51359242C>T, NG_011653.1:g.6072C>T, NM_145864.1:c.*716C>T

Select item 148660679418.

rs1486606794 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:50860537 (GRCh38)
19:51363793 (GRCh37)
Canonical SPDI:: NC_000019.10:50860536:A:G
Gene:: KLK3 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.50860537A>G, NC_000019.9:g.51363793A>G, NG_011653.1:g.10623A>G, NM_001648.2:c.*410A>G, NM_001030047.1:c.*921A>G, NM_001030048.1:c.*410A>G, NM_001030049.1:c.*410A>G

Select item 148649212519.

rs1486492125 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:50856998 (GRCh38)
19:51360254 (GRCh37)
Canonical SPDI:: NC_000019.10:50856997:C:A
Gene:: KLK3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000019.10:g.50856998C>A, NC_000019.9:g.51360254C>A, NG_011653.1:g.7084C>A

Select item 148602255120.

rs1486022551 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:50860767 (GRCh38)
19:51364023 (GRCh37)
Canonical SPDI:: NC_000019.10:50860766:T:A
Gene:: KLK3 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.50860767T>A, NC_000019.9:g.51364023T>A, NG_011653.1:g.10853T>A

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