SNP Links for Gene (Select 3605) - SNP

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Select item 14901581071.

rs1490158107 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:52190236 (GRCh38)
6:52055034 (GRCh37)
Canonical SPDI:: NC_000006.12:52190235:C:G
Gene:: IL17A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.52190236C>G, NC_000006.11:g.52055034C>G, NG_033021.1:g.8850C>G, NM_002190.3:c.*944C>G, NM_002190.2:c.*944C>G

Select item 14894714332.

rs1489471433 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 6:52185927 (GRCh38)
6:52050725 (GRCh37)
Canonical SPDI:: NC_000006.12:52185926:A:
Gene:: IL17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.52185927del, NC_000006.11:g.52050725del, NG_033021.1:g.4541del

Select item 14894144583.

rs1489414458 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:52190459 (GRCh38)
6:52055257 (GRCh37)
Canonical SPDI:: NC_000006.12:52190458:C:G
Gene:: IL17A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.52190459C>G, NC_000006.11:g.52055257C>G, NG_033021.1:g.9073C>G, NM_002190.3:c.*1167C>G, NM_002190.2:c.*1167C>G

Select item 14893886104.

rs1489388610 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->CAAT
Chromosome:: no mapping
Canonical SPDI:

Select item 14878242505.

rs1487824250 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:52185546 (GRCh38)
6:52050344 (GRCh37)
Canonical SPDI:: NC_000006.12:52185545:A:G
Gene:: IL17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52185546A>G, NC_000006.11:g.52050344A>G, NG_033021.1:g.4160A>G

Select item 14878052596.

rs1487805259 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:52190859 (GRCh38)
6:52055657 (GRCh37)
Canonical SPDI:: NC_000006.12:52190858:G:C
Gene:: IL17A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.52190859G>C, NC_000006.11:g.52055657G>C, NG_033021.1:g.9473G>C

Select item 14877514447.

rs1487751444 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 6:52190161 (GRCh38)
6:52054959 (GRCh37)
Canonical SPDI:: NC_000006.12:52190160:CC:C
Gene:: IL17A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000006.12:g.52190162del, NC_000006.11:g.52054960del, NG_033021.1:g.8776del, NM_002190.3:c.*870del, NM_002190.2:c.*870del

Select item 14870007148.

rs1487000714 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 6:52189217 (GRCh38)
6:52054015 (GRCh37)
Canonical SPDI:: NC_000006.12:52189216:C:A,NC_000006.12:52189216:C:T
Gene:: IL17A (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000031/1 (ALFA)
T=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.52189217C>A, NC_000006.12:g.52189217C>T, NC_000006.11:g.52054015C>A, NC_000006.11:g.52054015C>T, NG_033021.1:g.7831C>A, NG_033021.1:g.7831C>T, NM_002190.3:c.393C>A, NM_002190.3:c.393C>T, NM_002190.2:c.393C>A, NM_002190.2:c.393C>T, NP_002181.1:p.Asn131Lys

Select item 14862026709.

rs1486202670 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 6:52186747 (GRCh38)
6:52051545 (GRCh37)
Canonical SPDI:: NC_000006.12:52186746:G:
Gene:: IL17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52186747del, NC_000006.11:g.52051545del, NG_033021.1:g.5361del

Select item 148600500910.

rs1486005009 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:52185320 (GRCh38)
6:52050118 (GRCh37)
Canonical SPDI:: NC_000006.12:52185319:A:G
Gene:: IL17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.52185320A>G, NC_000006.11:g.52050118A>G, NG_033021.1:g.3934A>G

Select item 148514079611.

rs1485140796 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:52185943 (GRCh38)
6:52050741 (GRCh37)
Canonical SPDI:: NC_000006.12:52185942:T:C
Gene:: IL17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.52185943T>C, NC_000006.11:g.52050741T>C, NG_033021.1:g.4557T>C

Select item 148510999412.

rs1485109994 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:52185833 (GRCh38)
6:52050631 (GRCh37)
Canonical SPDI:: NC_000006.12:52185832:C:G
Gene:: IL17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.52185833C>G, NC_000006.11:g.52050631C>G, NG_033021.1:g.4447C>G

Select item 148502622913.

rs1485026229 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 6:52188927 (GRCh38)
6:52053725 (GRCh37)
Canonical SPDI:: NC_000006.12:52188926:A:
Gene:: IL17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000019/5 (TOPMED)
-=0.000625/4 (1000Genomes)
HGVS:: NC_000006.12:g.52188927del, NC_000006.11:g.52053725del, NG_033021.1:g.7541del

Select item 148477877214.

rs1484778772 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 6:52185453 (GRCh38)
6:52050251 (GRCh37)
Canonical SPDI:: NC_000006.12:52185452:T:
Gene:: IL17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52185453del, NC_000006.11:g.52050251del, NG_033021.1:g.4067del

Select item 148442171115.

rs1484421711 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:52189784 (GRCh38)
6:52054582 (GRCh37)
Canonical SPDI:: NC_000006.12:52189783:T:C
Gene:: IL17A (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52189784T>C, NC_000006.11:g.52054582T>C, NG_033021.1:g.8398T>C, NM_002190.3:c.*492T>C, NM_002190.2:c.*492T>C

Select item 148331862616.

rs1483318626 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:52189157 (GRCh38)
6:52053955 (GRCh37)
Canonical SPDI:: NC_000006.12:52189156:C:T
Gene:: IL17A (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.52189157C>T, NC_000006.11:g.52053955C>T, NG_033021.1:g.7771C>T, NM_002190.3:c.333C>T, NM_002190.2:c.333C>T

Select item 148328753617.

rs1483287536 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:52187997 (GRCh38)
6:52052795 (GRCh37)
Canonical SPDI:: NC_000006.12:52187996:C:A
Gene:: IL17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52187997C>A, NC_000006.11:g.52052795C>A, NG_033021.1:g.6611C>A

Select item 148285067318.

rs1482850673 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:52184500 (GRCh38)
6:52049298 (GRCh37)
Canonical SPDI:: NC_000006.12:52184499:A:G
Gene:: IL17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.52184500A>G, NC_000006.11:g.52049298A>G, NG_033021.1:g.3114A>G

Select item 148266162019.

rs1482661620 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:52184909 (GRCh38)
6:52049707 (GRCh37)
Canonical SPDI:: NC_000006.12:52184908:A:T
Gene:: IL17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.52184909A>T, NC_000006.11:g.52049707A>T, NG_033021.1:g.3523A>T

Select item 148165691820.

rs1481656918 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 6:52190848 (GRCh38)
6:52055646 (GRCh37)
Canonical SPDI:: NC_000006.12:52190847:AG:
Gene:: IL17A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.52190848_52190849del, NC_000006.11:g.52055646_52055647del, NG_033021.1:g.9462_9463del

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