SNP Links for Gene (Select 3620) - SNP

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Select item 14913687621.

rs1491368762 has merged into rs11337517 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAA>-,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 8:39923409 (GRCh38)
8:39780928 (GRCh37)
Canonical SPDI:: NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000008.11:39923403:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAA=0./0 (ALFA)
HGVS:: NC_000008.11:g.39923409_39923421del, NC_000008.11:g.39923413_39923421del, NC_000008.11:g.39923414_39923421del, NC_000008.11:g.39923416_39923421del, NC_000008.11:g.39923417_39923421del, NC_000008.11:g.39923418_39923421del, NC_000008.11:g.39923419_39923421del, NC_000008.11:g.39923420_39923421del, NC_000008.11:g.39923421del, NC_000008.11:g.39923421dup, NC_000008.11:g.39923420_39923421dup, NC_000008.11:g.39923419_39923421dup, NC_000008.10:g.39780928_39780940del, NC_000008.10:g.39780932_39780940del, NC_000008.10:g.39780933_39780940del, NC_000008.10:g.39780935_39780940del, NC_000008.10:g.39780936_39780940del, NC_000008.10:g.39780937_39780940del, NC_000008.10:g.39780938_39780940del, NC_000008.10:g.39780939_39780940del, NC_000008.10:g.39780940del, NC_000008.10:g.39780940dup, NC_000008.10:g.39780939_39780940dup, NC_000008.10:g.39780938_39780940dup, NG_028155.1:g.14601_14613del, NG_028155.1:g.14605_14613del, NG_028155.1:g.14606_14613del, NG_028155.1:g.14608_14613del, NG_028155.1:g.14609_14613del, NG_028155.1:g.14610_14613del, NG_028155.1:g.14611_14613del, NG_028155.1:g.14612_14613del, NG_028155.1:g.14613del, NG_028155.1:g.14613dup, NG_028155.1:g.14612_14613dup, NG_028155.1:g.14611_14613dup

Select item 14907197872.

rs1490719787 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 8:39922811 (GRCh38)
8:39780330 (GRCh37)
Canonical SPDI:: NC_000008.11:39922810:T:C
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000036/5 (GnomAD)
C=0.000038/10 (TOPMED)
HGVS:: NC_000008.11:g.39922811T>C, NC_000008.10:g.39780330T>C, NG_028155.1:g.14003T>C

Select item 14906060933.

rs1490606093 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:39926405 (GRCh38)
8:39783924 (GRCh37)
Canonical SPDI:: NC_000008.11:39926404:C:T
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000008.11:g.39926405C>T, NC_000008.10:g.39783924C>T, NG_028155.1:g.17597C>T

Select item 14903795824.

rs1490379582 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 8:39925996 (GRCh38)
8:39783515 (GRCh37)
Canonical SPDI:: NC_000008.11:39925995:G:T
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.39925996G>T, NC_000008.10:g.39783515G>T, NG_028155.1:g.17188G>T

Select item 14902292895.

rs1490229289 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 8:39923256 (GRCh38)
8:39780775 (GRCh37)
Canonical SPDI:: NC_000008.11:39923255:T:C
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.39923256T>C, NC_000008.10:g.39780775T>C, NG_028155.1:g.14448T>C

Select item 14901945766.

rs1490194576 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 8:39925186 (GRCh38)
8:39782705 (GRCh37)
Canonical SPDI:: NC_000008.11:39925185:G:T
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000008.11:g.39925186G>T, NC_000008.10:g.39782705G>T, NG_028155.1:g.16378G>T

Select item 14901725357.

rs1490172535 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 8:39916806 (GRCh38)
8:39774325 (GRCh37)
Canonical SPDI:: NC_000008.11:39916805:T:G
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000008.11:g.39916806T>G, NC_000008.10:g.39774325T>G, NG_028155.1:g.7998T>G

Select item 14901606138.

rs1490160613 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 8:39927116 (GRCh38)
8:39784635 (GRCh37)
Canonical SPDI:: NC_000008.11:39927115:G:T
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000008.11:g.39927116G>T, NC_000008.10:g.39784635G>T, NG_028155.1:g.18308G>T

Select item 14895720109.

rs1489572010 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:39917278 (GRCh38)
8:39774797 (GRCh37)
Canonical SPDI:: NC_000008.11:39917277:C:T
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.39917278C>T, NC_000008.10:g.39774797C>T, NG_028155.1:g.8470C>T

Select item 148951943610.

rs1489519436 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 8:39914978 (GRCh38)
8:39772497 (GRCh37)
Canonical SPDI:: NC_000008.11:39914977:G:A,NC_000008.11:39914977:G:C
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.39914978G>A, NC_000008.11:g.39914978G>C, NC_000008.10:g.39772497G>A, NC_000008.10:g.39772497G>C, NG_028155.1:g.6170G>A, NG_028155.1:g.6170G>C

Select item 148936156011.

rs1489361560 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 8:39919152 (GRCh38)
8:39776671 (GRCh37)
Canonical SPDI:: NC_000008.11:39919151:C:A
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.39919152C>A, NC_000008.10:g.39776671C>A, NG_028155.1:g.10344C>A

Select item 148930442012.

rs1489304420 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 8:39917140 (GRCh38)
8:39774659 (GRCh37)
Canonical SPDI:: NC_000008.11:39917139:A:G
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000008.11:g.39917140A>G, NC_000008.10:g.39774659A>G, NG_028155.1:g.8332A>G

Select item 148927563213.

rs1489275632 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 8:39916273 (GRCh38)
8:39773792 (GRCh37)
Canonical SPDI:: NC_000008.11:39916272:T:C
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000065/9 (GnomAD)
C=0.004107/12 (KOREAN)
HGVS:: NC_000008.11:g.39916273T>C, NC_000008.10:g.39773792T>C, NG_028155.1:g.7465T>C

Select item 148901045214.

rs1489010452 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 8:39928478 (GRCh38)
8:39785997 (GRCh37)
Canonical SPDI:: NC_000008.11:39928477:A:G
Gene:: IDO1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000008.11:g.39928478A>G, NC_000008.10:g.39785997A>G, NG_028155.1:g.19670A>G, NM_002164.6:c.*293A>G, NM_002164.5:c.*293A>G

Select item 148869390015.

rs1488693900 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:39920428 (GRCh38)
8:39777947 (GRCh37)
Canonical SPDI:: NC_000008.11:39920427:C:T
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000008.11:g.39920428C>T, NC_000008.10:g.39777947C>T, NG_028155.1:g.11620C>T

Select item 148859056616.

rs1488590566 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 8:39917734 (GRCh38)
8:39775253 (GRCh37)
Canonical SPDI:: NC_000008.11:39917731:AGAG:AG
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAG=0.000084/1 (ALFA)
-=0./0 (GnomAD)
-=0.000019/5 (TOPMED)
HGVS:: NC_000008.11:g.39917732AG[1], NC_000008.10:g.39775251AG[1], NG_028155.1:g.8924AG[1]

Select item 148848730117.

rs1488487301 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 8:39917360 (GRCh38)
8:39774879 (GRCh37)
Canonical SPDI:: NC_000008.11:39917359:G:A
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000008.11:g.39917360G>A, NC_000008.10:g.39774879G>A, NG_028155.1:g.8552G>A

Select item 148822170818.

rs1488221708 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 8:39917927 (GRCh38)
8:39775446 (GRCh37)
Canonical SPDI:: NC_000008.11:39917926:C:A
Gene:: IDO1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000008.11:g.39917927C>A, NC_000008.10:g.39775446C>A, NG_028155.1:g.9119C>A, NM_002164.6:c.140C>A, NM_002164.5:c.140C>A, NP_002155.1:p.Pro47His

Select item 148779879519.

rs1487798795 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 8:39925468 (GRCh38)
8:39782987 (GRCh37)
Canonical SPDI:: NC_000008.11:39925467:T:C
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000008.11:g.39925468T>C, NC_000008.10:g.39782987T>C, NG_028155.1:g.16660T>C

Select item 148746992020.

rs1487469920 has merged into rs1244198557 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 8:39926399 (GRCh38)
8:39783918 (GRCh37)
Canonical SPDI:: NC_000008.11:39926398:AAA:AA,NC_000008.11:39926398:AAA:AAAA
Gene:: IDO1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.39926401del, NC_000008.11:g.39926401dup, NC_000008.10:g.39783920del, NC_000008.10:g.39783920dup, NG_028155.1:g.17593del, NG_028155.1:g.17593dup

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