SNP Links for Gene (Select 3627) - SNP

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Links from Gene

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Select item 14909416181.

rs1490941618 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:76023230 (GRCh38)
4:76944383 (GRCh37)
Canonical SPDI:: NC_000004.12:76023229:C:G
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.76023230C>G, NC_000004.11:g.76944383C>G

Select item 14904531462.

rs1490453146 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 4:76021708 (GRCh38)
4:76942861 (GRCh37)
Canonical SPDI:: NC_000004.12:76021707:A:G,NC_000004.12:76021707:A:T
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.76021708A>G, NC_000004.12:g.76021708A>T, NC_000004.11:g.76942861A>G, NC_000004.11:g.76942861A>T, NM_001565.4:c.*222T>C, NM_001565.4:c.*222T>A, NM_001565.3:c.*222T>C, NM_001565.3:c.*222T>A, NR_168520.1:n.458T>C, NR_168520.1:n.458T>A

Select item 14899665613.

rs1489966561 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:76021253 (GRCh38)
4:76942406 (GRCh37)
Canonical SPDI:: NC_000004.12:76021252:A:G
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.76021253A>G, NC_000004.11:g.76942406A>G, NM_001565.4:c.*677T>C, NM_001565.3:c.*677T>C, NR_168520.1:n.913T>C

Select item 14896748074.

rs1489674807 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:76022188 (GRCh38)
4:76943341 (GRCh37)
Canonical SPDI:: NC_000004.12:76022187:T:C
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.76022188T>C, NC_000004.11:g.76943341T>C

Select item 14880213815.

rs1488021381 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:76024794 (GRCh38)
4:76945947 (GRCh37)
Canonical SPDI:: NC_000004.12:76024793:G:A
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.76024794G>A, NC_000004.11:g.76945947G>A

Select item 14878356106.

rs1487835610 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:76023727 (GRCh38)
4:76944880 (GRCh37)
Canonical SPDI:: NC_000004.12:76023726:G:A
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.76023727G>A, NC_000004.11:g.76944880G>A

Select item 14878329017.

rs1487832901 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:76024407 (GRCh38)
4:76945560 (GRCh37)
Canonical SPDI:: NC_000004.12:76024406:G:A
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.00202/33 (ALFA)
HGVS:: NC_000004.12:g.76024407G>A, NC_000004.11:g.76945560G>A

Select item 14871232358.

rs1487123235 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTA>- [Show Flanks]
Chromosome:: 4:76024845 (GRCh38)
4:76945998 (GRCh37)
Canonical SPDI:: NC_000004.12:76024842:TACTA:TA
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TA=0.000224/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000223/1 (Estonian)
HGVS:: NC_000004.12:g.76024845_76024847del, NC_000004.11:g.76945998_76946000del

Select item 14864119319.

rs1486411931 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 4:76023156 (GRCh38)
4:76944309 (GRCh37)
Canonical SPDI:: NC_000004.12:76023155:C:A,NC_000004.12:76023155:C:T
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0./0 (KOREAN)
T=0.000004/1 (TOPMED)
A=0.000546/1 (Korea1K)
HGVS:: NC_000004.12:g.76023156C>A, NC_000004.12:g.76023156C>T, NC_000004.11:g.76944309C>A, NC_000004.11:g.76944309C>T

Select item 148482700910.

rs1484827009 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 4:76024299 (GRCh38)
4:76945452 (GRCh37)
Canonical SPDI:: NC_000004.12:76024298:G:C,NC_000004.12:76024298:G:T
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00007/1 (ALFA)
HGVS:: NC_000004.12:g.76024299G>C, NC_000004.12:g.76024299G>T, NC_000004.11:g.76945452G>C, NC_000004.11:g.76945452G>T

Select item 148469479911.

rs1484694799 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 4:76021464 (GRCh38)
4:76942617 (GRCh37)
Canonical SPDI:: NC_000004.12:76021463:T:A
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.76021464T>A, NC_000004.11:g.76942617T>A, NM_001565.4:c.*466A>T, NM_001565.3:c.*466A>T, NR_168520.1:n.702A>T

Select item 148391145212.

rs1483911452 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:76021844 (GRCh38)
4:76942997 (GRCh37)
Canonical SPDI:: NC_000004.12:76021843:T:C
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000004.12:g.76021844T>C, NC_000004.11:g.76942997T>C, NM_001565.4:c.*86A>G, NM_001565.3:c.*86A>G, NR_168520.1:n.322A>G

Select item 148355924113.

rs1483559241 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:76021435 (GRCh38)
4:76942588 (GRCh37)
Canonical SPDI:: NC_000004.12:76021434:T:C
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.76021435T>C, NC_000004.11:g.76942588T>C, NM_001565.4:c.*495A>G, NM_001565.3:c.*495A>G, NR_168520.1:n.731A>G

Select item 148319453914.

rs1483194539 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 4:76023059 (GRCh38)
4:76944212 (GRCh37)
Canonical SPDI:: NC_000004.12:76023058:T:A,NC_000004.12:76023058:T:C
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000004.12:g.76023059T>A, NC_000004.12:g.76023059T>C, NC_000004.11:g.76944212T>A, NC_000004.11:g.76944212T>C

Select item 148301810815.

rs1483018108 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:76021034 (GRCh38)
4:76942187 (GRCh37)
Canonical SPDI:: NC_000004.12:76021033:T:C
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.76021034T>C, NC_000004.11:g.76942187T>C

Select item 148196191616.

rs1481961916 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 4:76022698 (GRCh38)
4:76943851 (GRCh37)
Canonical SPDI:: NC_000004.12:76022697:C:A,NC_000004.12:76022697:C:G
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: missense_variant,genic_upstream_transcript_variant,coding_sequence_variant,intron_variant,stop_gained
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.76022698C>A, NC_000004.12:g.76022698C>G, NC_000004.11:g.76943851C>A, NC_000004.11:g.76943851C>G, NM_001565.4:c.181G>T, NM_001565.4:c.181G>C, NM_001565.3:c.181G>T, NM_001565.3:c.181G>C, NP_001556.2:p.Glu61Ter, NP_001556.2:p.Glu61Gln

Select item 147952040917.

rs1479520409 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:76020905 (GRCh38)
4:76942058 (GRCh37)
Canonical SPDI:: NC_000004.12:76020904:G:A
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.76020905G>A, NC_000004.11:g.76942058G>A

Select item 147937939518.

rs1479379395 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 4:76021555 (GRCh38)
4:76942708 (GRCh37)
Canonical SPDI:: NC_000004.12:76021554:A:
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,3_prime_UTR_variant
HGVS:: NC_000004.12:g.76021555del, NC_000004.11:g.76942708del, NM_001565.4:c.*375del, NM_001565.3:c.*375del, NR_168520.1:n.611del

Select item 147863383219.

rs1478633832 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:76025395 (GRCh38)
4:76946548 (GRCh37)
Canonical SPDI:: NC_000004.12:76025394:T:C
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.76025395T>C, NC_000004.11:g.76946548T>C

Select item 147850811720.

rs1478508117 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 4:76023887 (GRCh38)
4:76945040 (GRCh37)
Canonical SPDI:: NC_000004.12:76023886:A:T
Gene:: ART3 (Varview), CXCL10 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.76023887A>T, NC_000004.11:g.76945040A>T