SNP Links for Gene (Select 386682) - SNP

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Items: 1 to 20 of 853

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Select item 14904772831.

rs1490477283 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:44557718 (GRCh38)
21:45977601 (GRCh37)
Canonical SPDI:: NC_000021.9:44557717:A:G
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000021.9:g.44557718A>G, NW_004775435.1:g.61041A>G, NG_033806.2:g.158854T>C, NG_033806.1:g.158861T>C, NG_050765.1:g.6043T>C, NC_000021.8:g.45977601A>G

Select item 14890459582.

rs1489045958 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 21:44559685 (GRCh38)
21:45979568 (GRCh37)
Canonical SPDI:: NC_000021.9:44559684:CC:C
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000036/5 (GnomAD)
-=0.000049/13 (TOPMED)
HGVS:: NC_000021.9:g.44559686del, NW_004775435.1:g.63009del, NG_033806.2:g.156887del, NG_033806.1:g.156894del, NG_050765.1:g.4076del, NC_000021.8:g.45979569del

Select item 14887148613.

rs1488714861 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 21:44560238 (GRCh38)
21:45980121 (GRCh37)
Canonical SPDI:: NC_000021.9:44560237:G:A,NC_000021.9:44560237:G:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.44560238G>A, NC_000021.9:g.44560238G>T, NW_004775435.1:g.63561G>A, NW_004775435.1:g.63561G>T, NG_033806.2:g.156334C>T, NG_033806.2:g.156334C>A, NG_033806.1:g.156341C>T, NG_033806.1:g.156341C>A, NG_050765.1:g.3523C>T, NG_050765.1:g.3523C>A, NC_000021.8:g.45980121G>A, NC_000021.8:g.45980121G>T

Select item 14886452314.

rs1488645231 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 21:44559102 (GRCh38)
21:45978985 (GRCh37)
Canonical SPDI:: NC_000021.9:44559101:C:G
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.44559102C>G, NW_004775435.1:g.62425C>G, NG_033806.2:g.157470G>C, NG_033806.1:g.157477G>C, NG_050765.1:g.4659G>C, NC_000021.8:g.45978985C>G

Select item 14886037735.

rs1488603773 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 21:44559764 (GRCh38)
21:45979647 (GRCh37)
Canonical SPDI:: NC_000021.9:44559763:A:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.44559764A>T, NW_004775435.1:g.63087A>T, NG_033806.2:g.156808T>A, NG_033806.1:g.156815T>A, NG_050765.1:g.3997T>A, NC_000021.8:g.45979647A>T

Select item 14873743776.

rs1487374377 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 21:44560247 (GRCh38)
21:45980130 (GRCh37)
Canonical SPDI:: NC_000021.9:44560246:A:C,NC_000021.9:44560246:A:G
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000014/2 (GnomAD)
G=0.000035/1 (TOMMO)
HGVS:: NC_000021.9:g.44560247A>C, NC_000021.9:g.44560247A>G, NW_004775435.1:g.63570A>C, NW_004775435.1:g.63570A>G, NG_033806.2:g.156325T>G, NG_033806.2:g.156325T>C, NG_033806.1:g.156332T>G, NG_033806.1:g.156332T>C, NG_050765.1:g.3514T>G, NG_050765.1:g.3514T>C, NC_000021.8:g.45980130A>C, NC_000021.8:g.45980130A>G

Select item 14867378217.

rs1486737821 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 21:44557644 (GRCh38)
21:45977527 (GRCh37)
Canonical SPDI:: NC_000021.9:44557643:C:A,NC_000021.9:44557643:C:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00004/1 (TOMMO)
T=0.00016/1 (1000Genomes)
HGVS:: NC_000021.9:g.44557644C>A, NC_000021.9:g.44557644C>T, NW_004775435.1:g.60967C>A, NW_004775435.1:g.60967C>T, NG_033806.2:g.158928G>T, NG_033806.2:g.158928G>A, NG_033806.1:g.158935G>T, NG_033806.1:g.158935G>A, NG_050765.1:g.6117G>T, NG_050765.1:g.6117G>A, NC_000021.8:g.45977527C>A, NC_000021.8:g.45977527C>T

Select item 14845294568.

rs1484529456 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:44558983 (GRCh38)
21:45978866 (GRCh37)
Canonical SPDI:: NC_000021.9:44558982:G:A
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.44558983G>A, NW_004775435.1:g.62306G>A, NG_033806.2:g.157589C>T, NG_033806.1:g.157596C>T, NG_050765.1:g.4778C>T, NC_000021.8:g.45978866G>A

Select item 14842709699.

rs1484270969 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 21:44560106 (GRCh38)
21:45979989 (GRCh37)
Canonical SPDI:: NC_000021.9:44560105:C:A,NC_000021.9:44560105:C:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000021.9:g.44560106C>A, NC_000021.9:g.44560106C>T, NW_004775435.1:g.63429C>A, NW_004775435.1:g.63429C>T, NG_033806.2:g.156466G>T, NG_033806.2:g.156466G>A, NG_033806.1:g.156473G>T, NG_033806.1:g.156473G>A, NG_050765.1:g.3655G>T, NG_050765.1:g.3655G>A, NC_000021.8:g.45979989C>A, NC_000021.8:g.45979989C>T

Select item 148257150310.

rs1482571503 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:44559970 (GRCh38)
21:45979853 (GRCh37)
Canonical SPDI:: NC_000021.9:44559969:C:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000043/6 (GnomAD)
T=0.000045/12 (TOPMED)
HGVS:: NC_000021.9:g.44559970C>T, NW_004775435.1:g.63293C>T, NG_033806.2:g.156602G>A, NG_033806.1:g.156609G>A, NG_050765.1:g.3791G>A, NC_000021.8:g.45979853C>T

Select item 148245715911.

rs1482457159 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:44557729 (GRCh38)
21:45977612 (GRCh37)
Canonical SPDI:: NC_000021.9:44557728:C:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.44557729C>T, NW_004775435.1:g.61052C>T, NG_033806.2:g.158843G>A, NG_033806.1:g.158850G>A, NG_050765.1:g.6032G>A, NC_000021.8:g.45977612C>T

Select item 148203187712.

rs1482031877 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:44557790 (GRCh38)
21:45977673 (GRCh37)
Canonical SPDI:: NC_000021.9:44557789:G:A
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000021.9:g.44557790G>A, NW_004775435.1:g.61113G>A, NG_033806.2:g.158782C>T, NG_033806.1:g.158789C>T, NG_050765.1:g.5971C>T, NM_198696.3:c.*260C>T, NC_000021.8:g.45977673G>A

Select item 148066020313.

rs1480660203 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 21:44557766 (GRCh38)
21:45977649 (GRCh37)
Canonical SPDI:: NC_000021.9:44557765:C:A,NC_000021.9:44557765:C:G
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
HGVS:: NC_000021.9:g.44557766C>A, NC_000021.9:g.44557766C>G, NW_004775435.1:g.61089C>A, NW_004775435.1:g.61089C>G, NG_033806.2:g.158806G>T, NG_033806.2:g.158806G>C, NG_033806.1:g.158813G>T, NG_033806.1:g.158813G>C, NG_050765.1:g.5995G>T, NG_050765.1:g.5995G>C, NC_000021.8:g.45977649C>A, NC_000021.8:g.45977649C>G

Select item 148043744514.

rs1480437445 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:44558563 (GRCh38)
21:45978446 (GRCh37)
Canonical SPDI:: NC_000021.9:44558562:G:A
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.44558563G>A, NW_004775435.1:g.61886G>A, NG_033806.2:g.158009C>T, NG_033806.1:g.158016C>T, NG_050765.1:g.5198C>T, NM_198696.3:c.153C>T, NM_198696.2:c.153C>T, NC_000021.8:g.45978446G>A

Select item 148014259515.

rs1480142595 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 21:44558849 (GRCh38)
21:45978732 (GRCh37)
Canonical SPDI:: NC_000021.9:44558848:G:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.44558849G>T, NW_004775435.1:g.62172G>T, NG_033806.2:g.157723C>A, NG_033806.1:g.157730C>A, NG_050765.1:g.4912C>A, NC_000021.8:g.45978732G>T

Select item 147850538816.

rs1478505388 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:44559751 (GRCh38)
21:45979634 (GRCh37)
Canonical SPDI:: NC_000021.9:44559750:C:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.44559751C>T, NW_004775435.1:g.63074C>T, NG_033806.2:g.156821G>A, NG_033806.1:g.156828G>A, NG_050765.1:g.4010G>A, NC_000021.8:g.45979634C>T

Select item 147847082717.

rs1478470827 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:44559242 (GRCh38)
21:45979125 (GRCh37)
Canonical SPDI:: NC_000021.9:44559241:C:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000021.9:g.44559242C>T, NW_004775435.1:g.62565C>T, NG_033806.2:g.157330G>A, NG_033806.1:g.157337G>A, NG_050765.1:g.4519G>A, NC_000021.8:g.45979125C>T

Select item 147817573018.

rs1478175730 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:44560349 (GRCh38)
21:45980232 (GRCh37)
Canonical SPDI:: NC_000021.9:44560348:C:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.44560349C>T, NW_004775435.1:g.63672C>T, NG_033806.2:g.156223G>A, NG_033806.1:g.156230G>A, NG_050765.1:g.3412G>A, NC_000021.8:g.45980232C>T

Select item 147680374319.

rs1476803743 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 21:44559653 (GRCh38)
21:45979536 (GRCh37)
Canonical SPDI:: NC_000021.9:44559652:GGG:GG
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.44559655del, NW_004775435.1:g.62978del, NG_033806.2:g.156919del, NG_033806.1:g.156926del, NG_050765.1:g.4108del, NC_000021.8:g.45979538del

Select item 147318692920.

rs1473186929 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 21:44557535 (GRCh38)
21:45977418 (GRCh37)
Canonical SPDI:: NC_000021.9:44557534:C:G,NC_000021.9:44557534:C:T
Gene:: TSPEAR (Varview), KRTAP10-3 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000034/9 (TOPMED)
HGVS:: NC_000021.9:g.44557535C>G, NC_000021.9:g.44557535C>T, NW_004775435.1:g.60858C>G, NW_004775435.1:g.60858C>T, NG_033806.2:g.159037G>C, NG_033806.2:g.159037G>A, NG_033806.1:g.159044G>C, NG_033806.1:g.159044G>A, NG_050765.1:g.6226G>C, NG_050765.1:g.6226G>A, NC_000021.8:g.45977418C>G, NC_000021.8:g.45977418C>T

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