SNP Links for Gene (Select 388282) - SNP

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Select item 14915130991.

rs1491513099 has merged into rs533115992 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 16:57811929 (GRCh38)
16:57845841 (GRCh37)
Canonical SPDI:: NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000016.10:57811918:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
AA=0.1587/795 (1000Genomes)
HGVS:: NC_000016.10:g.57811929_57811936del, NC_000016.10:g.57811930_57811936del, NC_000016.10:g.57811931_57811936del, NC_000016.10:g.57811932_57811936del, NC_000016.10:g.57811933_57811936del, NC_000016.10:g.57811934_57811936del, NC_000016.10:g.57811935_57811936del, NC_000016.10:g.57811936del, NC_000016.10:g.57811936dup, NC_000016.10:g.57811935_57811936dup, NC_000016.10:g.57811934_57811936dup, NC_000016.10:g.57811930_57811936dup, NC_000016.9:g.57845841_57845848del, NC_000016.9:g.57845842_57845848del, NC_000016.9:g.57845843_57845848del, NC_000016.9:g.57845844_57845848del, NC_000016.9:g.57845845_57845848del, NC_000016.9:g.57845846_57845848del, NC_000016.9:g.57845847_57845848del, NC_000016.9:g.57845848del, NC_000016.9:g.57845848dup, NC_000016.9:g.57845847_57845848dup, NC_000016.9:g.57845846_57845848dup, NC_000016.9:g.57845842_57845848dup, NW_003871085.1:g.71820_71827del, NW_003871085.1:g.71821_71827del, NW_003871085.1:g.71822_71827del, NW_003871085.1:g.71823_71827del, NW_003871085.1:g.71824_71827del, NW_003871085.1:g.71825_71827del, NW_003871085.1:g.71826_71827del, NW_003871085.1:g.71827del, NW_003871085.1:g.71827dup, NW_003871085.1:g.71826_71827dup, NW_003871085.1:g.71825_71827dup, NW_003871085.1:g.71821_71827dup

Select item 14913850112.

rs1491385011 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 16:57811918 (GRCh38)
16:57845830 (GRCh37)
Canonical SPDI:: NC_000016.10:57811917:CA:
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.05985/710 (ALFA)
-=0.00092/15 (TOMMO)
HGVS:: NC_000016.10:g.57811918_57811919del, NC_000016.9:g.57845830_57845831del, NW_003871085.1:g.71809_71810del

Select item 14911360283.

rs1491136028 has merged into rs374744837 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAG>-,AG,AGAGAG [Show Flanks]
Chromosome:: 16:57808593 (GRCh38)
16:57842505 (GRCh37)
Canonical SPDI:: NC_000016.10:57808586:AGAGAGAGAG:AGAGAG,NC_000016.10:57808586:AGAGAGAGAG:AGAGAGAG,NC_000016.10:57808586:AGAGAGAGAG:AGAGAGAGAGAG
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGAGAG=0./0 (ALFA)
-=0.000035/1 (TOMMO)
-=0.0002/53 (TOPMED)
-=0.003195/16 (1000Genomes)
HGVS:: NC_000016.10:g.57808587AG[3], NC_000016.10:g.57808587AG[4], NC_000016.10:g.57808587AG[6], NC_000016.9:g.57842499AG[3], NC_000016.9:g.57842499AG[4], NC_000016.9:g.57842499AG[6], NW_003871085.1:g.68478AG[3], NW_003871085.1:g.68478AG[4], NW_003871085.1:g.68478AG[6]

Select item 14910829284.

rs1491082928 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AC [Show Flanks]
Chromosome:: 16:57807958 (GRCh38)
16:57841871 (GRCh37)
Canonical SPDI:: NC_000016.10:57807958:AC:ACAC
Gene:: KIFC3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: ACAC=0./0 (ALFA)
AC=0.00017/23 (GnomAD)
HGVS:: NC_000016.10:g.57807959_57807960dup, NC_000016.9:g.57841871_57841872dup, NW_003871085.1:g.67850_67851dup

Select item 14908552065.

rs1490855206 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:57811669 (GRCh38)
16:57845581 (GRCh37)
Canonical SPDI:: NC_000016.10:57811668:A:G
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.57811669A>G, NC_000016.9:g.57845581A>G, NW_003871085.1:g.71560A>G

Select item 14903092806.

rs1490309280 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:57812738 (GRCh38)
16:57846650 (GRCh37)
Canonical SPDI:: NC_000016.10:57812737:C:T
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.57812738C>T, NC_000016.9:g.57846650C>T, NW_003871085.1:g.72629C>T

Select item 14902838037.

rs1490283803 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:57813551 (GRCh38)
16:57847463 (GRCh37)
Canonical SPDI:: NC_000016.10:57813550:G:A
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.57813551G>A, NW_003871085.1:g.73442G>A, NC_000016.9:g.57847463G>A

Select item 14898238518.

rs1489823851 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 16:57813158 (GRCh38)
16:57847070 (GRCh37)
Canonical SPDI:: NC_000016.10:57813157:T:A,NC_000016.10:57813157:T:C
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.57813158T>A, NC_000016.10:g.57813158T>C, NC_000016.9:g.57847070T>A, NC_000016.9:g.57847070T>C, NW_003871085.1:g.73049T>A, NW_003871085.1:g.73049T>C

Select item 14897974379.

rs1489797437 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:57814022 (GRCh38)
16:57847926 (GRCh37)
Canonical SPDI:: NC_000016.10:57814021:A:G
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.57814022A>G, NC_000016.9:g.57847926A>G, NW_003871085.1:g.73913A>G

Select item 148886994410.

rs1488869944 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:57813475 (GRCh38)
16:57847387 (GRCh37)
Canonical SPDI:: NC_000016.10:57813474:C:T
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.57813475C>T, NC_000016.9:g.57847387C>T, NW_003871085.1:g.73366C>T

Select item 148863478311.

rs1488634783 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:57811023 (GRCh38)
16:57844935 (GRCh37)
Canonical SPDI:: NC_000016.10:57811022:G:T
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.57811023G>T, NC_000016.9:g.57844935G>T, NW_003871085.1:g.70914G>T

Select item 148783723312.

rs1487837233 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:57814913 (GRCh38)
16:57848817 (GRCh37)
Canonical SPDI:: NC_000016.10:57814912:T:C
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/1 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000016.10:g.57814913T>C, NC_000016.9:g.57848817T>C, NW_003871085.1:g.74804T>C

Select item 148745652813.

rs1487456528 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:57807763 (GRCh38)
16:57841675 (GRCh37)
Canonical SPDI:: NC_000016.10:57807762:C:T
Gene:: KIFC3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.57807763C>T, NC_000016.9:g.57841675C>T, NW_003871085.1:g.67654C>T

Select item 148732833214.

rs1487328332 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:57808501 (GRCh38)
16:57842413 (GRCh37)
Canonical SPDI:: NC_000016.10:57808500:C:T
Gene:: KIFC3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000043/6 (GnomAD)
HGVS:: NC_000016.10:g.57808501C>T, NC_000016.9:g.57842413C>T, NW_003871085.1:g.68392C>T

Select item 148667676515.

rs1486676765 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 16:57811937 (GRCh38)
16:57845849 (GRCh37)
Canonical SPDI:: NC_000016.10:57811936:G:
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000016.10:g.57811937del, NC_000016.9:g.57845849del, NW_003871085.1:g.71828del

Select item 148634543116.

rs1486345431 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:57808989 (GRCh38)
16:57842901 (GRCh37)
Canonical SPDI:: NC_000016.10:57808988:T:C
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000026/7 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000016.10:g.57808989T>C, NC_000016.9:g.57842901T>C, NW_003871085.1:g.68880T>C

Select item 148531874517.

rs1485318745 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 16:57815932 (GRCh38)
16:57849836 (GRCh37)
Canonical SPDI:: NC_000016.10:57815931:T:C,NC_000016.10:57815931:T:G
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000034/9 (TOPMED)
HGVS:: NC_000016.10:g.57815932T>C, NC_000016.10:g.57815932T>G, NC_000016.9:g.57849836T>C, NC_000016.9:g.57849836T>G, NW_003871085.1:g.75823T>C, NW_003871085.1:g.75823T>G

Select item 148494353418.

rs1484943534 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 16:57809686 (GRCh38)
16:57843599 (GRCh37)
Canonical SPDI:: NC_000016.10:57809686:T:TT
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.57809687dup, NC_000016.9:g.57843599dup, NW_003871085.1:g.69578dup

Select item 148479614719.

rs1484796147 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:57817150 (GRCh38)
16:57851054 (GRCh37)
Canonical SPDI:: NC_000016.10:57817149:G:C
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.57817150G>C, NC_000016.9:g.57851054G>C, NW_003871085.1:g.77041G>C

Select item 148451016120.

rs1484510161 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGATGTAAATTG>- [Show Flanks]
Chromosome:: 16:57808861 (GRCh38)
16:57842773 (GRCh37)
Canonical SPDI:: NC_000016.10:57808858:TGAGATGTAAATTG:TG
Gene:: KIFC3 (Varview), LOC388282 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TG=0./0 (ALFA)
-=0.000023/6 (TOPMED)
-=0.000057/8 (GnomAD)
HGVS:: NC_000016.10:g.57808861_57808872del, NC_000016.9:g.57842773_57842784del, NW_003871085.1:g.68752_68763del

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