SNP Links for Gene (Select 388407) - SNP

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Select item 14908950601.

rs1490895060 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:61413054 (GRCh38)
17:59490415 (GRCh37)
Canonical SPDI:: NC_000017.11:61413053:G:A
Gene:: LINC02875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.61413054G>A, NC_000017.10:g.59490415G>A, NM_203425.2:c.*323G>A, NR_160788.1:n.1304G>A, NM_203425.1:c.*323G>A

Select item 14907682572.

rs1490768257 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:61413147 (GRCh38)
17:59490508 (GRCh37)
Canonical SPDI:: NC_000017.11:61413146:G:A
Gene:: LINC02875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.61413147G>A, NC_000017.10:g.59490508G>A, NM_203425.2:c.*416G>A, NR_160788.1:n.1397G>A, NM_203425.1:c.*416G>A

Select item 14895665243.

rs1489566524 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 17:61410398 (GRCh38)
17:59487759 (GRCh37)
Canonical SPDI:: NC_000017.11:61410397:GGGG:GGG
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.61410401del, NC_000017.10:g.59487762del

Select item 14887759264.

rs1488775926 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:61413189 (GRCh38)
17:59490550 (GRCh37)
Canonical SPDI:: NC_000017.11:61413188:C:A
Gene:: LINC02875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.61413189C>A, NC_000017.10:g.59490550C>A, NM_203425.2:c.*458C>A, NR_160788.1:n.1439C>A, NM_203425.1:c.*458C>A

Select item 14884178195.

rs1488417819 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:61412618 (GRCh38)
17:59489979 (GRCh37)
Canonical SPDI:: NC_000017.11:61412617:G:T
Gene:: LINC02875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
T=0.000015/2 (GnomAD_exomes)
HGVS:: NC_000017.11:g.61412618G>T, NC_000017.10:g.59489979G>T, NM_203425.2:c.643G>T, NR_160788.1:n.868G>T, NM_203425.1:c.643G>T

Select item 14869584326.

rs1486958432 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:61410289 (GRCh38)
17:59487650 (GRCh37)
Canonical SPDI:: NC_000017.11:61410288:C:G
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.61410289C>G, NC_000017.10:g.59487650C>G

Select item 14869524607.

rs1486952460 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:61412566 (GRCh38)
17:59489927 (GRCh37)
Canonical SPDI:: NC_000017.11:61412565:C:T
Gene:: LINC02875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.61412566C>T, NC_000017.10:g.59489927C>T, NM_203425.2:c.591C>T, NR_160788.1:n.816C>T, NM_203425.1:c.591C>T

Select item 14868852098.

rs1486885209 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:61411151 (GRCh38)
17:59488512 (GRCh37)
Canonical SPDI:: NC_000017.11:61411150:G:A
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000017.11:g.61411151G>A, NC_000017.10:g.59488512G>A

Select item 14858259559.

rs1485825955 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:61411022 (GRCh38)
17:59488383 (GRCh37)
Canonical SPDI:: NC_000017.11:61411021:G:A,NC_000017.11:61411021:G:C
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000017.11:g.61411022G>A, NC_000017.11:g.61411022G>C, NC_000017.10:g.59488383G>A, NC_000017.10:g.59488383G>C

Select item 148530835310.

rs1485308353 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:61410787 (GRCh38)
17:59488148 (GRCh37)
Canonical SPDI:: NC_000017.11:61410786:A:G
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.61410787A>G, NC_000017.10:g.59488148A>G

Select item 148519363111.

rs1485193631 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:61411484 (GRCh38)
17:59488845 (GRCh37)
Canonical SPDI:: NC_000017.11:61411483:C:T
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.61411484C>T, NC_000017.10:g.59488845C>T

Select item 148497750712.

rs1484977507 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:61411075 (GRCh38)
17:59488436 (GRCh37)
Canonical SPDI:: NC_000017.11:61411074:G:A
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.61411075G>A, NC_000017.10:g.59488436G>A

Select item 148271368913.

rs1482713689 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:61410440 (GRCh38)
17:59487801 (GRCh37)
Canonical SPDI:: NC_000017.11:61410439:G:A
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (KOREAN)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.61410440G>A, NC_000017.10:g.59487801G>A

Select item 148261677914.

rs1482616779 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:61413306 (GRCh38)
17:59490667 (GRCh37)
Canonical SPDI:: NC_000017.11:61413305:G:A
Gene:: LINC02875 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.61413306G>A, NC_000017.10:g.59490667G>A

Select item 148205223615.

rs1482052236 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:61409754 (GRCh38)
17:59487115 (GRCh37)
Canonical SPDI:: NC_000017.11:61409753:G:A
Gene:: TBX2 (Varview), LINC02875 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.61409754G>A, NC_000017.10:g.59487115G>A

Select item 148188827916.

rs1481888279 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:61410112 (GRCh38)
17:59487473 (GRCh37)
Canonical SPDI:: NC_000017.11:61410111:T:G
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000017.11:g.61410112T>G, NC_000017.10:g.59487473T>G

Select item 148173209317.

rs1481732093 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 17:61410940 (GRCh38)
17:59488301 (GRCh37)
Canonical SPDI:: NC_000017.11:61410939:C:A,NC_000017.11:61410939:C:T
Gene:: LINC02875 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.61410940C>A, NC_000017.11:g.61410940C>T, NC_000017.10:g.59488301C>A, NC_000017.10:g.59488301C>T

Select item 148151443118.

rs1481514431 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:61412751 (GRCh38)
17:59490112 (GRCh37)
Canonical SPDI:: NC_000017.11:61412750:G:C
Gene:: LINC02875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.61412751G>C, NC_000017.10:g.59490112G>C, NM_203425.2:c.*20G>C, NR_160788.1:n.1001G>C, NM_203425.1:c.*20G>C

Select item 148150251019.

rs1481502510 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:61412430 (GRCh38)
17:59489791 (GRCh37)
Canonical SPDI:: NC_000017.11:61412429:G:A
Gene:: LINC02875 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000017.11:g.61412430G>A, NC_000017.10:g.59489791G>A, NM_203425.2:c.455G>A, NR_160788.1:n.680G>A, NM_203425.1:c.455G>A

Select item 148138584320.

rs1481385843 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:61413245 (GRCh38)
17:59490606 (GRCh37)
Canonical SPDI:: NC_000017.11:61413244:A:T
Gene:: LINC02875 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.61413245A>T, NC_000017.10:g.59490606A>T, NM_203425.2:c.*514A>T, NR_160788.1:n.1495A>T, NM_203425.1:c.*514A>T

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