SNP Links for Gene (Select 388610) - SNP

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Select item 14915609441.

rs1491560944 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 1:26997318 (GRCh38)
1:27323809 (GRCh37)
Canonical SPDI:: NC_000001.11:26997316:AGA:A
Gene:: TRNP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.26997318_26997319del, NC_000001.10:g.27323809_27323810del

Select item 14914558262.

rs1491455826 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 1:26997317 (GRCh38)
1:27323809 (GRCh37)
Canonical SPDI:: NC_000001.11:26997317:G:GG
Gene:: TRNP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
G=0.00004/1 (TOMMO)
HGVS:: NC_000001.11:g.26997318dup, NC_000001.10:g.27323809dup

Select item 14913855893.

rs1491385589 has merged into rs1415430706 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGG>-,GG,GGGG [Show Flanks]
Chromosome:: 1:26998233 (GRCh38)
1:27324724 (GRCh37)
Canonical SPDI:: NC_000001.11:26998229:GGGGGG:GGG,NC_000001.11:26998229:GGGGGG:GGGGG,NC_000001.11:26998229:GGGGGG:GGGGGGG
Gene:: TRNP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGG=0./0 (ALFA)
-=0.00003/8 (TOPMED)
-=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.26998233_26998235del, NC_000001.11:g.26998235del, NC_000001.11:g.26998235dup, NC_000001.10:g.27324724_27324726del, NC_000001.10:g.27324726del, NC_000001.10:g.27324726dup

Select item 14911052694.

rs1491105269 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 1:26993691 (GRCh38)
1:27320183 (GRCh37)
Canonical SPDI:: NC_000001.11:26993691:GGGG:GGGGG
Gene:: TRNP1 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: GGGGG=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.26993695dup, NC_000001.10:g.27320186dup, XM_005245867.4:c.-92dup, XM_005245867.3:c.-92dup, XM_005245867.2:c.-92dup, NM_001013642.3:c.-92dup

Select item 14899374445.

rs1489937444 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:26993663 (GRCh38)
1:27320154 (GRCh37)
Canonical SPDI:: NC_000001.11:26993662:T:C
Gene:: TRNP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.26993663T>C, NC_000001.10:g.27320154T>C

Select item 14898179916.

rs1489817991 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:27001139 (GRCh38)
1:27327630 (GRCh37)
Canonical SPDI:: NC_000001.11:27001138:C:T
Gene:: TRNP1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.27001139C>T, NC_000001.10:g.27327630C>T

Select item 14897644547.

rs1489764454 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,CCCCCCCCCTT,CCCCCCCCCTTT,CCCCCCCCT,CCCCCCCCTTTT,CCCCCCTT [Show Flanks]
Chromosome:: 1:26992645 (GRCh38)
1:27319137 (GRCh37)
Canonical SPDI:: NC_000001.11:26992645::A,NC_000001.11:26992645::CCCCCCCCCTT,NC_000001.11:26992645::CCCCCCCCCTTT,NC_000001.11:26992645::CCCCCCCCT,NC_000001.11:26992645::CCCCCCCCTTTT,NC_000001.11:26992645::CCCCCCTT
Gene:: TRNP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.26992645_26992646insA, NC_000001.11:g.26992645_26992646insCCCCCCCCCTT, NC_000001.11:g.26992645_26992646insCCCCCCCCCTTT, NC_000001.11:g.26992645_26992646insCCCCCCCCT, NC_000001.11:g.26992645_26992646insCCCCCCCCTTTT, NC_000001.11:g.26992645_26992646insCCCCCCTT, NC_000001.10:g.27319136_27319137insA, NC_000001.10:g.27319136_27319137insCCCCCCCCCTT, NC_000001.10:g.27319136_27319137insCCCCCCCCCTTT, NC_000001.10:g.27319136_27319137insCCCCCCCCT, NC_000001.10:g.27319136_27319137insCCCCCCCCTTTT, NC_000001.10:g.27319136_27319137insCCCCCCTT

Select item 14892550458.

rs1489255045 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:26999644 (GRCh38)
1:27326135 (GRCh37)
Canonical SPDI:: NC_000001.11:26999643:T:A
Gene:: TRNP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.26999644T>A, NC_000001.10:g.27326135T>A, NG_081996.1:g.849T>A

Select item 14890996919.

rs1489099691 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:27000572 (GRCh38)
1:27327063 (GRCh37)
Canonical SPDI:: NC_000001.11:27000571:T:C
Gene:: TRNP1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.27000572T>C, NC_000001.10:g.27327063T>C, XM_005245867.4:c.*886T>C, XM_005245867.3:c.*886T>C, XM_005245867.2:c.*886T>C, XM_005245867.1:c.*886T>C, NM_001013642.3:c.*868T>C, NM_001013642.2:c.*868T>C

Select item 148868423110.

rs1488684231 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:26993891 (GRCh38)
1:27320382 (GRCh37)
Canonical SPDI:: NC_000001.11:26993890:C:T
Gene:: TRNP1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.26993891C>T, NC_000001.10:g.27320382C>T, XM_005245867.4:c.105C>T, XM_005245867.3:c.105C>T, XM_005245867.2:c.105C>T, XM_005245867.1:c.105C>T, NM_001013642.3:c.105C>T, NM_001013642.2:c.105C>T

Select item 148858930311.

rs1488589303 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 1:26992109 (GRCh38)
1:27318600 (GRCh37)
Canonical SPDI:: NC_000001.11:26992108:AAA:AA,NC_000001.11:26992108:AAA:AAAA
Gene:: TRNP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0.00022/4 (ALFA)
-=0.00067/3 (Estonian)
HGVS:: NC_000001.11:g.26992111del, NC_000001.11:g.26992111dup, NC_000001.10:g.27318602del, NC_000001.10:g.27318602dup

Select item 148832121412.

rs1488321214 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:26994617 (GRCh38)
1:27321108 (GRCh37)
Canonical SPDI:: NC_000001.11:26994616:G:C
Gene:: TRNP1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.26994617G>C, NC_000001.10:g.27321108G>C, XM_005245867.4:c.*147G>C, XM_005245867.3:c.*147G>C, XM_005245867.2:c.*147G>C, XM_005245867.1:c.*147G>C

Select item 148819823613.

rs1488198236 has merged into rs1334916790 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGTGTGACT>-,AGTGTGACTAGTGTGACT [Show Flanks]
Chromosome:: 1:27000990 (GRCh38)
1:27327481 (GRCh37)
Canonical SPDI:: NC_000001.11:27000981:GTGTGACTAGTGTGACT:GTGTGACT,NC_000001.11:27000981:GTGTGACTAGTGTGACT:GTGTGACTAGTGTGACTAGTGTGACT
Gene:: TRNP1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGTGACTAGTGTGACTAGTGTGACT=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.27000990_27000998del, NC_000001.11:g.27000990_27000998dup, NC_000001.10:g.27327481_27327489del, NC_000001.10:g.27327481_27327489dup

Select item 148802301014.

rs1488023010 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:26995005 (GRCh38)
1:27321496 (GRCh37)
Canonical SPDI:: NC_000001.11:26995004:A:C
Gene:: TRNP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.26995005A>C, NC_000001.10:g.27321496A>C

Select item 148801687315.

rs1488016873 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:26993036 (GRCh38)
1:27319527 (GRCh37)
Canonical SPDI:: NC_000001.11:26993035:G:A,NC_000001.11:26993035:G:C
Gene:: TRNP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.26993036G>A, NC_000001.11:g.26993036G>C, NC_000001.10:g.27319527G>A, NC_000001.10:g.27319527G>C

Select item 148778625016.

rs1487786250 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTGG>- [Show Flanks]
Chromosome:: 1:26996355 (GRCh38)
1:27322846 (GRCh37)
Canonical SPDI:: NC_000001.11:26996351:TGGCTGG:TGG
Gene:: TRNP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.26996355_26996358del, NC_000001.10:g.27322846_27322849del

Select item 148729773717.

rs1487297737 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:26996781 (GRCh38)
1:27323272 (GRCh37)
Canonical SPDI:: NC_000001.11:26996780:G:A
Gene:: TRNP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.26996781G>A, NC_000001.10:g.27323272G>A

Select item 148704262218.

rs1487042622 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:26995562 (GRCh38)
1:27322053 (GRCh37)
Canonical SPDI:: NC_000001.11:26995561:G:T
Gene:: TRNP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.26995562G>T, NC_000001.10:g.27322053G>T

Select item 148692314519.

rs1486923145 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 1:26998901 (GRCh38)
1:27325392 (GRCh37)
Canonical SPDI:: NC_000001.11:26998900:TTT:TT
Gene:: TRNP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.26998903del, NC_000001.10:g.27325394del, NG_081996.1:g.108del

Select item 148673885720.

rs1486738857 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:26994123 (GRCh38)
1:27320614 (GRCh37)
Canonical SPDI:: NC_000001.11:26994122:G:A
Gene:: TRNP1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.26994123G>A, NC_000001.10:g.27320614G>A, XM_005245867.4:c.337G>A, XM_005245867.3:c.337G>A, XM_005245867.2:c.337G>A, XM_005245867.1:c.337G>A, NM_001013642.3:c.337G>A, NM_001013642.2:c.337G>A, XP_005245924.1:p.Val113Met, NP_001013664.2:p.Val113Met

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