SNP Links for Gene (Select 389741) - SNP

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Select item 14908601331.

rs1490860133 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 9:39804393 (GRCh38)
9:41949411 (GRCh37)
Canonical SPDI:: NC_000009.12:39804392:C:A,NC_000009.12:39804392:C:G,NC_000009.12:39804392:C:T
Gene:: GLIDR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00034/1 (KOREAN)
HGVS:: NC_000009.12:g.39804393C>A, NC_000009.12:g.39804393C>G, NC_000009.12:g.39804393C>T, NC_000009.11:g.41949411C>A, NC_000009.11:g.41949411C>G, NC_000009.11:g.41949411C>T

Select item 14907882222.

rs1490788222 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:39804920 (GRCh38)
9:41949938 (GRCh37)
Canonical SPDI:: NC_000009.12:39804919:T:C
Gene:: GLIDR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000009.12:g.39804920T>C, NC_000009.11:g.41949938T>C

Select item 14905957563.

rs1490595756 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:39805964 (GRCh38)
9:41950982 (GRCh37)
Canonical SPDI:: NC_000009.12:39805963:A:G
Gene:: GLIDR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00034/4 (ALFA)
G=0.00108/101 (GnomAD)
HGVS:: NC_000009.12:g.39805964A>G, NC_000009.11:g.41950982A>G

Select item 14903273014.

rs1490327301 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 9:39808925 (GRCh38)
9:41953943 (GRCh37)
Canonical SPDI:: NC_000009.12:39808924:T:C,NC_000009.12:39808924:T:G
Gene:: GLIDR (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000508/6 (ALFA)
G=0.002494/348 (GnomAD)
G=0.006558/42 (1000Genomes)
HGVS:: NC_000009.12:g.39808925T>C, NC_000009.12:g.39808925T>G, NC_000009.11:g.41953943T>C, NC_000009.11:g.41953943T>G, NR_015363.2:n.1138A>G, NR_015363.2:n.1138A>C, NR_015363.1:n.1037A>G, NR_015363.1:n.1037A>C, NR_126044.1:n.1120A>G, NR_126044.1:n.1120A>C

Select item 14902986275.

rs1490298627 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 9:39805276 (GRCh38)
9:41950294 (GRCh37)
Canonical SPDI:: NC_000009.12:39805275:A:
Gene:: GLIDR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.39805276del, NC_000009.11:g.41950294del

Select item 14901943376.

rs1490194337 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:39809699 (GRCh38)
9:41954717 (GRCh37)
Canonical SPDI:: NC_000009.12:39809698:C:A,NC_000009.12:39809698:C:T
Gene:: GLIDR (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000015/2 (GnomAD)
HGVS:: NC_000009.12:g.39809699C>A, NC_000009.12:g.39809699C>T, NC_000009.11:g.41954717C>A, NC_000009.11:g.41954717C>T, NR_126046.1:n.461G>T, NR_126046.1:n.461G>A

Select item 14898359237.

rs1489835923 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TCTTTTTTTTTTAATG
Chromosome:: no mapping
Canonical SPDI:

Select item 14896112368.

rs1489611236 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 9:39809357 (GRCh38)
9:41954375 (GRCh37)
Canonical SPDI:: NC_000009.12:39809356:C:A,NC_000009.12:39809356:C:G,NC_000009.12:39809356:C:T
Gene:: GLIDR (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00034/1 (KOREAN)
HGVS:: NC_000009.12:g.39809357C>A, NC_000009.12:g.39809357C>G, NC_000009.12:g.39809357C>T, NC_000009.11:g.41954375C>A, NC_000009.11:g.41954375C>G, NC_000009.11:g.41954375C>T, NR_015363.2:n.706G>T, NR_015363.2:n.706G>C, NR_015363.2:n.706G>A, NR_015363.1:n.605G>T, NR_015363.1:n.605G>C, NR_015363.1:n.605G>A, NR_126044.1:n.688G>T, NR_126044.1:n.688G>C, NR_126044.1:n.688G>A

Select item 14895468979.

rs1489546897 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:39803924 (GRCh38)
9:41948942 (GRCh37)
Canonical SPDI:: NC_000009.12:39803923:C:T
Gene:: GLIDR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.39803924C>T, NC_000009.11:g.41948942C>T

Select item 148902771810.

rs1489027718 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:39804661 (GRCh38)
9:41949679 (GRCh37)
Canonical SPDI:: NC_000009.12:39804660:G:C
Gene:: GLIDR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000106/2 (TOMMO)
C=0.000546/1 (Korea1K)
C=0.001369/4 (KOREAN)
HGVS:: NC_000009.12:g.39804661G>C, NC_000009.11:g.41949679G>C

Select item 148899658911.

rs1488996589 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:39805337 (GRCh38)
9:41950355 (GRCh37)
Canonical SPDI:: NC_000009.12:39805336:G:A
Gene:: GLIDR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.39805337G>A, NC_000009.11:g.41950355G>A

Select item 148896331912.

rs1488963319 [Homo sapiens]

Variant type:: SNV:
Alleles:: G>A
Chromosome:: no mapping
Canonical SPDI:

Select item 148885242413.

rs1488852424 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:39809737 (GRCh38)
9:41954755 (GRCh37)
Canonical SPDI:: NC_000009.12:39809736:A:C
Gene:: GLIDR (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.39809737A>C, NC_000009.11:g.41954755A>C, NR_015363.2:n.423T>G, NR_015363.1:n.322T>G, NR_126044.1:n.423T>G, NR_126045.1:n.423T>G, NR_126046.1:n.423T>G

Select item 148882220314.

rs1488822203 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:39808937 (GRCh38)
9:41953955 (GRCh37)
Canonical SPDI:: NC_000009.12:39808936:G:A,NC_000009.12:39808936:G:C
Gene:: GLIDR (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.39808937G>A, NC_000009.12:g.39808937G>C, NC_000009.11:g.41953955G>A, NC_000009.11:g.41953955G>C, NR_015363.2:n.1126C>T, NR_015363.2:n.1126C>G, NR_015363.1:n.1025C>T, NR_015363.1:n.1025C>G, NR_126044.1:n.1108C>T, NR_126044.1:n.1108C>G

Select item 148861432815.

rs1488614328 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:39804597 (GRCh38)
9:41949615 (GRCh37)
Canonical SPDI:: NC_000009.12:39804596:G:A,NC_000009.12:39804596:G:C
Gene:: GLIDR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.39804597G>A, NC_000009.12:g.39804597G>C, NC_000009.11:g.41949615G>A, NC_000009.11:g.41949615G>C

Select item 148837282016.

rs1488372820 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:39807136 (GRCh38)
9:41952154 (GRCh37)
Canonical SPDI:: NC_000009.12:39807135:C:T
Gene:: GLIDR (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.39807136C>T, NC_000009.11:g.41952154C>T

Select item 148833992617.

rs1488339926 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:39806316 (GRCh38)
9:41951334 (GRCh37)
Canonical SPDI:: NC_000009.12:39806315:G:A,NC_000009.12:39806315:G:C
Gene:: GLIDR (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.39806316G>A, NC_000009.12:g.39806316G>C, NC_000009.11:g.41951334G>A, NC_000009.11:g.41951334G>C

Select item 148832514018.

rs1488325140 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:39807402 (GRCh38)
9:41952420 (GRCh37)
Canonical SPDI:: NC_000009.12:39807401:C:A,NC_000009.12:39807401:C:T
Gene:: GLIDR (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00006/1 (TOMMO)
T=0.00008/6 (GnomAD)
HGVS:: NC_000009.12:g.39807402C>A, NC_000009.12:g.39807402C>T, NC_000009.11:g.41952420C>A, NC_000009.11:g.41952420C>T, NR_015363.2:n.2661G>T, NR_015363.2:n.2661G>A, NR_015363.1:n.2560G>T, NR_015363.1:n.2560G>A

Select item 148826448119.

rs1488264481 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:39811100 (GRCh38)
9:41956118 (GRCh37)
Canonical SPDI:: NC_000009.12:39811099:G:A
Gene:: GLIDR (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.39811100G>A, NC_000009.11:g.41956118G>A

Select item 148824261220.

rs1488242612 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:39811562 (GRCh38)
9:41956580 (GRCh37)
Canonical SPDI:: NC_000009.12:39811561:T:A
Gene:: GLIDR (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00049/8 (ALFA)
A=0.00015/21 (GnomAD)
A=0.000684/2 (KOREAN)
A=0.001638/3 (Korea1K)
A=0.001982/33 (TOMMO)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000009.12:g.39811562T>A, NC_000009.11:g.41956580T>A

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