SNP Links for Gene (Select 390054) - SNP

Links from Gene

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Select item 14911422071.

rs1491142207 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 11:5133363 (GRCh38)
11:5154593 (GRCh37)
Canonical SPDI:: NC_000011.10:5133362:CA:
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000011.10:g.5133363_5133364del, NC_000011.9:g.5154593_5154594del

Select item 14909487792.

rs1490948779 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:5133471 (GRCh38)
11:5154701 (GRCh37)
Canonical SPDI:: NC_000011.10:5133470:C:G,NC_000011.10:5133470:C:T
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000008/1 (GnomAD)
HGVS:: NC_000011.10:g.5133471C>G, NC_000011.10:g.5133471C>T, NC_000011.9:g.5154701C>G, NC_000011.9:g.5154701C>T

Select item 14909235823.

rs1490923582 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:5132651 (GRCh38)
11:5153881 (GRCh37)
Canonical SPDI:: NC_000011.10:5132650:C:A
Gene:: OR52A5 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5132651C>A, NC_000011.9:g.5153881C>A, NM_001005160.3:c.-9G>T

Select item 14905695074.

rs1490569507 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:5134230 (GRCh38)
11:5155460 (GRCh37)
Canonical SPDI:: NC_000011.10:5134229:C:G
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.5134230C>G, NC_000011.9:g.5155460C>G

Select item 14899485785.

rs1489948578 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:5131742 (GRCh38)
11:5152972 (GRCh37)
Canonical SPDI:: NC_000011.10:5131741:G:T
Gene:: OR52A5 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5131742G>T, NC_000011.9:g.5152972G>T, NM_001005160.3:c.901C>A, NM_001005160.2:c.901C>A, NP_001005160.1:p.Gln301Lys

Select item 14891690596.

rs1489169059 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:5134388 (GRCh38)
11:5155618 (GRCh37)
Canonical SPDI:: NC_000011.10:5134387:A:C
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5134388A>C, NC_000011.9:g.5155618A>C

Select item 14887922437.

rs1488792243 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:5131976 (GRCh38)
11:5153206 (GRCh37)
Canonical SPDI:: NC_000011.10:5131975:G:A
Gene:: OR52A5 (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.5131976G>A, NC_000011.9:g.5153206G>A, NM_001005160.3:c.667C>T, NM_001005160.2:c.667C>T, NP_001005160.1:p.Gln223Ter

Select item 14885062508.

rs1488506250 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:5134510 (GRCh38)
11:5155740 (GRCh37)
Canonical SPDI:: NC_000011.10:5134509:T:G
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.0002/1 (1000Genomes)
HGVS:: NC_000011.10:g.5134510T>G, NC_000011.9:g.5155740T>G

Select item 14884420379.

rs1488442037 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 11:5134248 (GRCh38)
11:5155478 (GRCh37)
Canonical SPDI:: NC_000011.10:5134247:A:C,NC_000011.10:5134247:A:T
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000011.10:g.5134248A>C, NC_000011.10:g.5134248A>T, NC_000011.9:g.5155478A>C, NC_000011.9:g.5155478A>T

Select item 148764906610.

rs1487649066 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:5133492 (GRCh38)
11:5154722 (GRCh37)
Canonical SPDI:: NC_000011.10:5133491:C:T
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00169/20 (ALFA)
T=0.00241/10 (Estonian)
T=0.04521/132 (KOREAN)
HGVS:: NC_000011.10:g.5133492C>T, NC_000011.9:g.5154722C>T

Select item 148683405111.

rs1486834051 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:5132572 (GRCh38)
11:5153802 (GRCh37)
Canonical SPDI:: NC_000011.10:5132571:G:A
Gene:: OR52A5 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000011.10:g.5132572G>A, NC_000011.9:g.5153802G>A, NM_001005160.3:c.71C>T, NM_001005160.2:c.71C>T, NP_001005160.1:p.Ser24Leu

Select item 148325794712.

rs1483257947 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:5131410 (GRCh38)
11:5152640 (GRCh37)
Canonical SPDI:: NC_000011.10:5131409:G:A,NC_000011.10:5131409:G:C
Gene:: OR52A5 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000094/1 (ALFA)
C=0.000004/1 (TOPMED)
A=0.000248/4 (TOMMO)
HGVS:: NC_000011.10:g.5131410G>A, NC_000011.10:g.5131410G>C, NC_000011.9:g.5152640G>A, NC_000011.9:g.5152640G>C, NM_001005160.3:c.*282C>T, NM_001005160.3:c.*282C>G

Select item 148323200713.

rs1483232007 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 11:5131257 (GRCh38)
11:5152487 (GRCh37)
Canonical SPDI:: NC_000011.10:5131256:AAAAA:AAAA
Gene:: OR52A5 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.5131261del, NC_000011.9:g.5152491del, NM_001005160.3:c.*435del

Select item 148158457714.

rs1481584577 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:5133508 (GRCh38)
11:5154738 (GRCh37)
Canonical SPDI:: NC_000011.10:5133507:G:T
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00006/1 (ALFA)
T=0.00109/2 (Korea1K)
T=0.01646/48 (KOREAN)
HGVS:: NC_000011.10:g.5133508G>T, NC_000011.9:g.5154738G>T

Select item 147999950615.

rs1479999506 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:5133345 (GRCh38)
11:5154575 (GRCh37)
Canonical SPDI:: NC_000011.10:5133344:A:G
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000132/2 (ALFA)
G=0./0 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000011.10:g.5133345A>G, NC_000011.9:g.5154575A>G

Select item 147976923716.

rs1479769237 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:5131391 (GRCh38)
11:5152621 (GRCh37)
Canonical SPDI:: NC_000011.10:5131390:A:G
Gene:: OR52A5 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000038/10 (TOPMED)
HGVS:: NC_000011.10:g.5131391A>G, NC_000011.9:g.5152621A>G, NM_001005160.3:c.*301T>C

Select item 147923896917.

rs1479238969 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:5133206 (GRCh38)
11:5154436 (GRCh37)
Canonical SPDI:: NC_000011.10:5133205:A:T
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.5133206A>T, NC_000011.9:g.5154436A>T

Select item 147850305618.

rs1478503056 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:5133945 (GRCh38)
11:5155175 (GRCh37)
Canonical SPDI:: NC_000011.10:5133944:C:T
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.5133945C>T, NC_000011.9:g.5155175C>T

Select item 147832213419.

rs1478322134 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:5134476 (GRCh38)
11:5155706 (GRCh37)
Canonical SPDI:: NC_000011.10:5134475:T:C
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5134476T>C, NC_000011.9:g.5155706T>C

Select item 147683167720.

rs1476831677 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:5133200 (GRCh38)
11:5154430 (GRCh37)
Canonical SPDI:: NC_000011.10:5133199:T:G
Gene:: OR52A5 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5133200T>G, NC_000011.9:g.5154430T>G

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