SNP Links for Gene (Select 390155) - SNP

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Select item 14906345391.

rs1490634539 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:56274832 (GRCh38)
11:56042308 (GRCh37)
Canonical SPDI:: NC_000011.10:56274831:C:T
Gene:: OR5T1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.56274832C>T, NC_000011.9:g.56042308C>T, NW_025791793.1:g.85581C>T, NW_003871073.1:g.85581C>T

Select item 14903926182.

rs1490392618 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:56276023 (GRCh38)
11:56043499 (GRCh37)
Canonical SPDI:: NC_000011.10:56276022:G:T
Gene:: OR5T1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56276023G>T, NC_000011.9:g.56043499G>T, NW_025791793.1:g.86772G>T, NW_003871073.1:g.86772G>T, NM_001004745.2:c.385G>T, NM_001004745.1:c.385G>T, NP_001004745.1:p.Ala129Ser

Select item 14898744453.

rs1489874445 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:56274391 (GRCh38)
11:56041867 (GRCh37)
Canonical SPDI:: NC_000011.10:56274390:T:C
Gene:: OR5T1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.56274391T>C, NC_000011.9:g.56041867T>C, NW_025791793.1:g.85140T>C, NW_003871073.1:g.85140T>C

Select item 14876920174.

rs1487692017 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:56276452 (GRCh38)
11:56043928 (GRCh37)
Canonical SPDI:: NC_000011.10:56276451:G:A
Gene:: OR5T1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56276452G>A, NC_000011.9:g.56043928G>A, NW_025791793.1:g.87201G>A, NW_003871073.1:g.87201G>A, NM_001004745.2:c.814G>A, NM_001004745.1:c.814G>A, NP_001004745.1:p.Val272Met

Select item 14867626595.

rs1486762659 [Homo sapiens]

Variant type:: INS
Alleles:: ->GCC [Show Flanks]
Chromosome:: 11:56276848 (GRCh38)
11:56044325 (GRCh37)
Canonical SPDI:: NC_000011.10:56276848::GCC
Gene:: OR5T1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: GCC=0./0 (ALFA)
GCC=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56276848_56276849insGCC, NC_000011.9:g.56044324_56044325insGCC, NW_025791793.1:g.87597_87598insGCC, NW_003871073.1:g.87597_87598insGCC

Select item 14862279176.

rs1486227917 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:56276695 (GRCh38)
11:56044171 (GRCh37)
Canonical SPDI:: NC_000011.10:56276694:A:G
Gene:: OR5T1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000011.10:g.56276695A>G, NC_000011.9:g.56044171A>G, NW_025791793.1:g.87444A>G, NW_003871073.1:g.87444A>G, NM_001004745.2:c.*76A>G

Select item 14860540977.

rs1486054097 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:56274008 (GRCh38)
11:56041484 (GRCh37)
Canonical SPDI:: NC_000011.10:56274007:C:A
Gene:: OR5T1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00076/9 (ALFA)
HGVS:: NC_000011.10:g.56274008C>A, NC_000011.9:g.56041484C>A, NW_025791793.1:g.84757C>A, NW_003871073.1:g.84757C>A

Select item 14830872678.

rs1483087267 has merged into rs553309040 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 11:56274797 (GRCh38)
11:56042273 (GRCh37)
Canonical SPDI:: NC_000011.10:56274785:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000011.10:56274785:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:56274785:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:56274785:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:56274785:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:56274785:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: OR5T1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
-=0.0736/273 (TWINSUK)
-=0.0815/314 (ALSPAC)
HGVS:: NC_000011.10:g.56274797_56274798del, NC_000011.10:g.56274798del, NC_000011.10:g.56274798dup, NC_000011.10:g.56274797_56274798dup, NC_000011.10:g.56274796_56274798dup, NC_000011.10:g.56274795_56274798dup, NC_000011.9:g.56042273_56042274del, NC_000011.9:g.56042274del, NC_000011.9:g.56042274dup, NC_000011.9:g.56042273_56042274dup, NC_000011.9:g.56042272_56042274dup, NC_000011.9:g.56042271_56042274dup, NW_025791793.1:g.85546_85547del, NW_025791793.1:g.85547del, NW_025791793.1:g.85547dup, NW_025791793.1:g.85546_85547dup, NW_025791793.1:g.85545_85547dup, NW_025791793.1:g.85544_85547dup, NW_003871073.1:g.85546_85547del, NW_003871073.1:g.85547del, NW_003871073.1:g.85547dup, NW_003871073.1:g.85546_85547dup, NW_003871073.1:g.85545_85547dup, NW_003871073.1:g.85544_85547dup

Select item 14824463359.

rs1482446335 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:56274694 (GRCh38)
11:56042170 (GRCh37)
Canonical SPDI:: NC_000011.10:56274693:G:C
Gene:: OR5T1 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56274694G>C, NC_000011.9:g.56042170G>C, NW_025791793.1:g.85443G>C, NW_003871073.1:g.85443G>C, NM_001004745.2:c.-213G>C

Select item 148235849210.

rs1482358492 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:56275151 (GRCh38)
11:56042627 (GRCh37)
Canonical SPDI:: NC_000011.10:56275150:C:G
Gene:: OR5T1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.56275151C>G, NC_000011.9:g.56042627C>G, NW_025791793.1:g.85900C>G, NW_003871073.1:g.85900C>G

Select item 147992082711.

rs1479920827 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:56273774 (GRCh38)
11:56041250 (GRCh37)
Canonical SPDI:: NC_000011.10:56273773:A:G
Gene:: OR5T1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56273774A>G, NC_000011.9:g.56041250A>G, NW_025791793.1:g.84523A>G, NW_003871073.1:g.84523A>G

Select item 147888718612.

rs1478887186 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:56274676 (GRCh38)
11:56042152 (GRCh37)
Canonical SPDI:: NC_000011.10:56274675:T:C
Gene:: OR5T1 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56274676T>C, NC_000011.9:g.56042152T>C, NW_025791793.1:g.85425T>C, NW_003871073.1:g.85425T>C, NM_001004745.2:c.-231T>C

Select item 147825214213.

rs1478252142 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 11:56274587 (GRCh38)
11:56042063 (GRCh37)
Canonical SPDI:: NC_000011.10:56274586:AAAAAAA:AAAAAA
Gene:: OR5T1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAA=0./0 (ALFA)
-=0.000029/4 (GnomAD)
-=0.000045/12 (TOPMED)
HGVS:: NC_000011.10:g.56274593del, NC_000011.9:g.56042069del, NW_025791793.1:g.85342del, NW_003871073.1:g.85342del

Select item 147495130914.

rs1474951309 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:56276797 (GRCh38)
11:56044273 (GRCh37)
Canonical SPDI:: NC_000011.10:56276796:T:G
Gene:: OR5T1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.56276797T>G, NC_000011.9:g.56044273T>G, NW_025791793.1:g.87546T>G, NW_003871073.1:g.87546T>G, NM_001004745.2:c.*178T>G

Select item 147361650515.

rs1473616505 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 11:56275214 (GRCh38)
11:56042690 (GRCh37)
Canonical SPDI:: NC_000011.10:56275213:A:C,NC_000011.10:56275213:A:G
Gene:: OR5T1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000011.10:g.56275214A>C, NC_000011.10:g.56275214A>G, NC_000011.9:g.56042690A>C, NC_000011.9:g.56042690A>G, NW_025791793.1:g.85963A>C, NW_025791793.1:g.85963A>G, NW_003871073.1:g.85963A>C, NW_003871073.1:g.85963A>G

Select item 147350616216.

rs1473506162 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:56274380 (GRCh38)
11:56041856 (GRCh37)
Canonical SPDI:: NC_000011.10:56274379:A:G
Gene:: OR5T1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.56274380A>G, NC_000011.9:g.56041856A>G, NW_025791793.1:g.85129A>G, NW_003871073.1:g.85129A>G

Select item 147306164617.

rs1473061646 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:56275150 (GRCh38)
11:56042626 (GRCh37)
Canonical SPDI:: NC_000011.10:56275149:A:G,NC_000011.10:56275149:A:T
Gene:: OR5T1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.56275150A>G, NC_000011.10:g.56275150A>T, NC_000011.9:g.56042626A>G, NC_000011.9:g.56042626A>T, NW_025791793.1:g.85899A>G, NW_025791793.1:g.85899A>T, NW_003871073.1:g.85899A>G, NW_003871073.1:g.85899A>T

Select item 147144343218.

rs1471443432 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 11:56276032 (GRCh38)
11:56043509 (GRCh37)
Canonical SPDI:: NC_000011.10:56276032:A:AA
Gene:: OR5T1 (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.56276033dup, NC_000011.9:g.56043509dup, NW_025791793.1:g.86782dup, NW_003871073.1:g.86782dup, NM_001004745.2:c.395dup, NM_001004745.1:c.395dup, NP_001004745.1:p.Tyr132Ter

Select item 147111090719.

rs1471110907 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:56275752 (GRCh38)
11:56043228 (GRCh37)
Canonical SPDI:: NC_000011.10:56275751:C:T
Gene:: OR5T1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (GnomAD_exomes)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.56275752C>T, NC_000011.9:g.56043228C>T, NW_025791793.1:g.86501C>T, NW_003871073.1:g.86501C>T, NM_001004745.2:c.114C>T, NM_001004745.1:c.114C>T

Select item 147108207320.

rs1471082073 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:56275360 (GRCh38)
11:56042836 (GRCh37)
Canonical SPDI:: NC_000011.10:56275359:C:T
Gene:: OR5T1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000108/2 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000446/2 (Estonian)
HGVS:: NC_000011.10:g.56275360C>T, NC_000011.9:g.56042836C>T, NW_025791793.1:g.86109C>T, NW_003871073.1:g.86109C>T