SNP Links for Gene (Select 390168) - SNP

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Select item 14910045501.

rs1491004550 has merged into rs3071382 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,AAAA [Show Flanks]
Chromosome:: 11:56614818 (GRCh38)
11:56382294 (GRCh37)
Canonical SPDI:: NC_000011.10:56614816:AAA:A,NC_000011.10:56614816:AAA:AAAAA
Gene:: OR5M1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAA=0.00006/1 (ALFA)
AA=0.01349/226 (TOMMO)
HGVS:: NC_000011.10:g.56614818_56614819del, NC_000011.10:g.56614818_56614819dup, NC_000011.9:g.56382294_56382295del, NC_000011.9:g.56382294_56382295dup

Select item 14902258372.

rs1490225837 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:56613510 (GRCh38)
11:56380986 (GRCh37)
Canonical SPDI:: NC_000011.10:56613509:T:C
Gene:: OR5M1 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.56613510T>C, NC_000011.9:g.56380986T>C, NM_001004740.2:c.-8A>G

Select item 14890223583.

rs1489022358 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:56613243 (GRCh38)
11:56380719 (GRCh37)
Canonical SPDI:: NC_000011.10:56613242:G:T
Gene:: OR5M1 (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000011.10:g.56613243G>T, NC_000011.9:g.56380719G>T, NM_001004740.2:c.260C>A, NM_001004740.1:c.260C>A, NP_001004740.1:p.Ser87Ter

Select item 14890067574.

rs1489006757 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:56614823 (GRCh38)
11:56382299 (GRCh37)
Canonical SPDI:: NC_000011.10:56614822:T:C
Gene:: OR5M1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.56614823T>C, NC_000011.9:g.56382299T>C

Select item 14885678975.

rs1488567897 has merged into rs59777082 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA,CACACACACACACACACACACACACA,CACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACA [Show Flanks]
Chromosome:: 11:56614798 (GRCh38)
11:56382274 (GRCh37)
Canonical SPDI:: NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:56614776:ACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
Gene:: OR5M1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACACACACACA=0./0 (ALFA)
HGVS:: NC_000011.10:g.56614778CA[10], NC_000011.10:g.56614778CA[11], NC_000011.10:g.56614778CA[12], NC_000011.10:g.56614778CA[13], NC_000011.10:g.56614778CA[14], NC_000011.10:g.56614778CA[15], NC_000011.10:g.56614778CA[16], NC_000011.10:g.56614778CA[17], NC_000011.10:g.56614778CA[18], NC_000011.10:g.56614778CA[19], NC_000011.10:g.56614778CA[21], NC_000011.10:g.56614778CA[22], NC_000011.10:g.56614778CA[23], NC_000011.10:g.56614778CA[24], NC_000011.10:g.56614778CA[25], NC_000011.10:g.56614778CA[26], NC_000011.10:g.56614778CA[27], NC_000011.10:g.56614778CA[28], NC_000011.10:g.56614778CA[29], NC_000011.9:g.56382254CA[10], NC_000011.9:g.56382254CA[11], NC_000011.9:g.56382254CA[12], NC_000011.9:g.56382254CA[13], NC_000011.9:g.56382254CA[14], NC_000011.9:g.56382254CA[15], NC_000011.9:g.56382254CA[16], NC_000011.9:g.56382254CA[17], NC_000011.9:g.56382254CA[18], NC_000011.9:g.56382254CA[19], NC_000011.9:g.56382254CA[21], NC_000011.9:g.56382254CA[22], NC_000011.9:g.56382254CA[23], NC_000011.9:g.56382254CA[24], NC_000011.9:g.56382254CA[25], NC_000011.9:g.56382254CA[26], NC_000011.9:g.56382254CA[27], NC_000011.9:g.56382254CA[28], NC_000011.9:g.56382254CA[29]

Select item 14865856196.

rs1486585619 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:56613681 (GRCh38)
11:56381157 (GRCh37)
Canonical SPDI:: NC_000011.10:56613680:T:C
Gene:: OR5M1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.56613681T>C, NC_000011.9:g.56381157T>C

Select item 14860653597.

rs1486065359 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:56613699 (GRCh38)
11:56381175 (GRCh37)
Canonical SPDI:: NC_000011.10:56613698:T:A
Gene:: OR5M1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00005/7 (GnomAD)
HGVS:: NC_000011.10:g.56613699T>A, NC_000011.9:g.56381175T>A

Select item 14844279038.

rs1484427903 has merged into rs1374979148 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 11:56614122 (GRCh38)
11:56381598 (GRCh37)
Canonical SPDI:: NC_000011.10:56614121:TTTTTTT:TTTTTT,NC_000011.10:56614121:TTTTTTT:TTTTTTTT
Gene:: OR5M1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
HGVS:: NC_000011.10:g.56614128del, NC_000011.10:g.56614128dup, NC_000011.9:g.56381604del, NC_000011.9:g.56381604dup

Select item 14843791419.

rs1484379141 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:56613081 (GRCh38)
11:56380557 (GRCh37)
Canonical SPDI:: NC_000011.10:56613080:C:T
Gene:: OR5M1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56613081C>T, NC_000011.9:g.56380557C>T, NM_001004740.2:c.422G>A, NM_001004740.1:c.422G>A, NP_001004740.1:p.Cys141Tyr

Select item 148425113910.

rs1484251139 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:56613145 (GRCh38)
11:56380621 (GRCh37)
Canonical SPDI:: NC_000011.10:56613144:A:G
Gene:: OR5M1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.56613145A>G, NC_000011.9:g.56380621A>G, NM_001004740.2:c.358T>C, NM_001004740.1:c.358T>C

Select item 148253192811.

rs1482531928 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:56612429 (GRCh38)
11:56379905 (GRCh37)
Canonical SPDI:: NC_000011.10:56612428:A:G,NC_000011.10:56612428:A:T
Gene:: OR5M1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.56612429A>G, NC_000011.10:g.56612429A>T, NC_000011.9:g.56379905A>G, NC_000011.9:g.56379905A>T, NM_001004740.2:c.*126T>C, NM_001004740.2:c.*126T>A

Select item 148223554912.

rs1482235549 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:56613970 (GRCh38)
11:56381446 (GRCh37)
Canonical SPDI:: NC_000011.10:56613969:G:T
Gene:: OR5M1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56613970G>T, NC_000011.9:g.56381446G>T

Select item 147860188913.

rs1478601889 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:56613201 (GRCh38)
11:56380677 (GRCh37)
Canonical SPDI:: NC_000011.10:56613200:C:T
Gene:: OR5M1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56613201C>T, NC_000011.9:g.56380677C>T, NM_001004740.2:c.302G>A, NM_001004740.1:c.302G>A, NP_001004740.1:p.Cys101Tyr

Select item 147859023114.

rs1478590231 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:56614947 (GRCh38)
11:56382423 (GRCh37)
Canonical SPDI:: NC_000011.10:56614946:C:T
Gene:: OR5M1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000011.10:g.56614947C>T, NC_000011.9:g.56382423C>T

Select item 147827521815.

rs1478275218 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:56612959 (GRCh38)
11:56380435 (GRCh37)
Canonical SPDI:: NC_000011.10:56612958:G:A
Gene:: OR5M1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.56612959G>A, NC_000011.9:g.56380435G>A, NM_001004740.2:c.544C>T, NM_001004740.1:c.544C>T, NP_001004740.1:p.Pro182Ser

Select item 147716167416.

rs1477161674 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:56612313 (GRCh38)
11:56379789 (GRCh37)
Canonical SPDI:: NC_000011.10:56612312:A:G
Gene:: OR5M1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.56612313A>G, NC_000011.9:g.56379789A>G, NM_001004740.2:c.*242T>C

Select item 147401406417.

rs1474014064 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:56614210 (GRCh38)
11:56381686 (GRCh37)
Canonical SPDI:: NC_000011.10:56614209:C:G
Gene:: OR5M1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56614210C>G, NC_000011.9:g.56381686C>G

Select item 147396334418.

rs1473963344 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:56615054 (GRCh38)
11:56382530 (GRCh37)
Canonical SPDI:: NC_000011.10:56615053:C:T
Gene:: OR5M1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.56615054C>T, NC_000011.9:g.56382530C>T

Select item 147375478719.

rs1473754787 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:56612070 (GRCh38)
11:56379547 (GRCh37)
Canonical SPDI:: NC_000011.10:56612070:TTTTTT:TTTTTTT
Gene:: OR5M1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.000248/4 (TOMMO)
HGVS:: NC_000011.10:g.56612076dup, NC_000011.9:g.56379552dup, NM_001004740.2:c.*484dup

Select item 147259379120.

rs1472593791 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:56613683 (GRCh38)
11:56381159 (GRCh37)
Canonical SPDI:: NC_000011.10:56613682:T:G
Gene:: OR5M1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.56613683T>G, NC_000011.9:g.56381159T>G

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