SNP Links for Gene (Select 391622) - SNP

Links from Gene

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Select item 14909673431.

rs1490967343 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 4:9368491 (GRCh38)
4:9370217 (GRCh37)
Canonical SPDI:: NC_000004.12:9368490:G:C
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00163/20 (ALFA)
C=0.00017/8 (GnomAD_exomes)
C=0.00054/6 (TOMMO)
C=0.00606/14 (KOREAN)
HGVS:: NC_000004.12:g.9368491G>C, NC_000004.11:g.9370217G>C, NR_027279.1:n.618G>C

Select item 14908568762.

rs1490856876 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 4:9369265 (GRCh38)
4:9370991 (GRCh37)
Canonical SPDI:: NC_000004.12:9369264:C:A,NC_000004.12:9369264:C:T
Gene:: USP17L6P (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.9369265C>A, NC_000004.12:g.9369265C>T, NC_000004.11:g.9370991C>A, NC_000004.11:g.9370991C>T

Select item 14904754763.

rs1490475476 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 4:9368115 (GRCh38)
4:9369841 (GRCh37)
Canonical SPDI:: NC_000004.12:9368114:G:T
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000004.12:g.9368115G>T, NC_000004.11:g.9369841G>T, NR_027279.1:n.242G>T

Select item 14894276744.

rs1489427674 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 4:9369273 (GRCh38)
4:9370999 (GRCh37)
Canonical SPDI:: NC_000004.12:9369272:T:A
Gene:: USP17L6P (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.9369273T>A, NC_000004.11:g.9370999T>A

Select item 14888883165.

rs1488888316 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:9369384 (GRCh38)
4:9371110 (GRCh37)
Canonical SPDI:: NC_000004.12:9369383:T:C
Gene:: USP17L6P (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.9369384T>C, NC_000004.11:g.9371110T>C

Select item 14878657206.

rs1487865720 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 4:9369495 (GRCh38)
4:9371221 (GRCh37)
Canonical SPDI:: NC_000004.12:9369494:G:C,NC_000004.12:9369494:G:T
Gene:: USP17L6P (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00004/1 (TOMMO)
HGVS:: NC_000004.12:g.9369495G>C, NC_000004.12:g.9369495G>T, NC_000004.11:g.9371221G>C, NC_000004.11:g.9371221G>T

Select item 14877037077.

rs1487703707 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:9368573 (GRCh38)
4:9370299 (GRCh37)
Canonical SPDI:: NC_000004.12:9368572:C:T
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.00064/1 (ALFA)
T=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000004.12:g.9368573C>T, NC_000004.11:g.9370299C>T, NR_027279.1:n.700C>T

Select item 14870526198.

rs1487052619 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 4:9369546 (GRCh38)
4:9371272 (GRCh37)
Canonical SPDI:: NC_000004.12:9369545:T:C,NC_000004.12:9369545:T:G
Gene:: USP17L6P (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.9369546T>C, NC_000004.12:g.9369546T>G, NC_000004.11:g.9371272T>C, NC_000004.11:g.9371272T>G

Select item 14869448169.

rs1486944816 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 4:9368799 (GRCh38)
4:9370525 (GRCh37)
Canonical SPDI:: NC_000004.12:9368798:A:T
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000004.12:g.9368799A>T, NC_000004.11:g.9370525A>T, NR_027279.1:n.926A>T

Select item 148462328110.

rs1484623281 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 4:9369049 (GRCh38)
4:9370775 (GRCh37)
Canonical SPDI:: NC_000004.12:9369048:A:G,NC_000004.12:9369048:A:T
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000004.12:g.9369049A>G, NC_000004.12:g.9369049A>T, NC_000004.11:g.9370775A>G, NC_000004.11:g.9370775A>T, NR_027279.1:n.1176A>G, NR_027279.1:n.1176A>T

Select item 148363971411.

rs1483639714 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:9368918 (GRCh38)
4:9370644 (GRCh37)
Canonical SPDI:: NC_000004.12:9368917:A:G
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000012/2 (GnomAD_exomes)
HGVS:: NC_000004.12:g.9368918A>G, NC_000004.11:g.9370644A>G, NR_027279.1:n.1045A>G

Select item 148301229912.

rs1483012299 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 4:9369359 (GRCh38)
4:9371085 (GRCh37)
Canonical SPDI:: NC_000004.12:9369358:G:A,NC_000004.12:9369358:G:T
Gene:: USP17L6P (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
T=0.000034/9 (TOPMED)
T=0.000342/1 (KOREAN)
T=0.000546/1 (Korea1K)
HGVS:: NC_000004.12:g.9369359G>A, NC_000004.12:g.9369359G>T, NC_000004.11:g.9371085G>A, NC_000004.11:g.9371085G>T

Select item 148288265213.

rs1482882652 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 4:9369053 (GRCh38)
4:9370779 (GRCh37)
Canonical SPDI:: NC_000004.12:9369052:C:G,NC_000004.12:9369052:C:T
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000004.12:g.9369053C>G, NC_000004.12:g.9369053C>T, NC_000004.11:g.9370779C>G, NC_000004.11:g.9370779C>T, NR_027279.1:n.1180C>G, NR_027279.1:n.1180C>T

Select item 148285761714.

rs1482857617 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 4:9369488 (GRCh38)
4:9371214 (GRCh37)
Canonical SPDI:: NC_000004.12:9369487:G:C,NC_000004.12:9369487:G:T
Gene:: USP17L6P (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.9369488G>C, NC_000004.12:g.9369488G>T, NC_000004.11:g.9371214G>C, NC_000004.11:g.9371214G>T

Select item 148226103015.

rs1482261030 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:9368697 (GRCh38)
4:9370423 (GRCh37)
Canonical SPDI:: NC_000004.12:9368696:T:C
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.00003/2 (GnomAD_exomes)
HGVS:: NC_000004.12:g.9368697T>C, NC_000004.11:g.9370423T>C, NR_027279.1:n.824T>C

Select item 148201313316.

rs1482013133 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:9368954 (GRCh38)
4:9370680 (GRCh37)
Canonical SPDI:: NC_000004.12:9368953:T:C
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000004.12:g.9368954T>C, NC_000004.11:g.9370680T>C, NR_027279.1:n.1081T>C

Select item 148162185617.

rs1481621856 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:9368421 (GRCh38)
4:9370147 (GRCh37)
Canonical SPDI:: NC_000004.12:9368420:T:C
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by cluster
HGVS:: NC_000004.12:g.9368421T>C, NC_000004.11:g.9370147T>C, NR_027279.1:n.548T>C

Select item 147864552518.

rs1478645525 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 4:9369391 (GRCh38)
4:9371117 (GRCh37)
Canonical SPDI:: NC_000004.12:9369390:G:A,NC_000004.12:9369390:G:T
Gene:: USP17L6P (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000036/5 (GnomAD)
HGVS:: NC_000004.12:g.9369391G>A, NC_000004.12:g.9369391G>T, NC_000004.11:g.9371117G>A, NC_000004.11:g.9371117G>T

Select item 147850563719.

rs1478505637 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 4:9368765 (GRCh38)
4:9370491 (GRCh37)
Canonical SPDI:: NC_000004.12:9368764:C:A,NC_000004.12:9368764:C:T
Gene:: USP17L6P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.001041/17 (ALFA)
A=0.000108/15 (GnomAD)
A=0.001562/10 (1000Genomes)
A=0.005476/16 (KOREAN)
A=0.008422/238 (TOMMO)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000004.12:g.9368765C>A, NC_000004.12:g.9368765C>T, NC_000004.11:g.9370491C>A, NC_000004.11:g.9370491C>T, NR_027279.1:n.892C>A, NR_027279.1:n.892C>T

Select item 147707581820.

rs1477075818 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 4:9369175 (GRCh38)
4:9370901 (GRCh37)
Canonical SPDI:: NC_000004.12:9369174:G:A,NC_000004.12:9369174:G:C,NC_000004.12:9369174:G:T
Gene:: USP17L6P (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000004.12:g.9369175G>A, NC_000004.12:g.9369175G>C, NC_000004.12:g.9369175G>T, NC_000004.11:g.9370901G>A, NC_000004.11:g.9370901G>C, NC_000004.11:g.9370901G>T

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