SNP Links for Gene (Select 3936) - SNP

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Select item 14915624201.

rs1491562420 has merged into rs143449455 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCTCTCT>-,CT,CTCT,CTCTCT,CTCTCTCTCT,CTCTCTCTCTCT [Show Flanks]
Chromosome:: 13:46179980 (GRCh38)
13:46754115 (GRCh37)
Canonical SPDI:: NC_000013.11:46179970:TCTCTCTCTCTCTCTCT:TCTCTCTCT,NC_000013.11:46179970:TCTCTCTCTCTCTCTCT:TCTCTCTCTCT,NC_000013.11:46179970:TCTCTCTCTCTCTCTCT:TCTCTCTCTCTCT,NC_000013.11:46179970:TCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCT,NC_000013.11:46179970:TCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT,NC_000013.11:46179970:TCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCT
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCTCTCTCTCT=0./0 (ALFA)
TC=0.05292/265 (1000Genomes)
TC=0.1028/22 (Vietnamese)
HGVS:: NC_000013.11:g.46179972CT[4], NC_000013.11:g.46179972CT[5], NC_000013.11:g.46179972CT[6], NC_000013.11:g.46179972CT[7], NC_000013.11:g.46179972CT[9], NC_000013.11:g.46179972CT[10], NC_000013.10:g.46754107CT[4], NC_000013.10:g.46754107CT[5], NC_000013.10:g.46754107CT[6], NC_000013.10:g.46754107CT[7], NC_000013.10:g.46754107CT[9], NC_000013.10:g.46754107CT[10], XM_005266374.3:c.-11548GA[4], XM_005266374.3:c.-11548GA[5], XM_005266374.3:c.-11548GA[6], XM_005266374.3:c.-11548GA[7], XM_005266374.3:c.-11548GA[9], XM_005266374.3:c.-11548GA[10]

Select item 14914638122.

rs1491463812 has merged into rs554047551 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 13:46135135 (GRCh38)
13:46709270 (GRCh37)
Canonical SPDI:: NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LCP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000013.11:g.46135135_46135136del, NC_000013.11:g.46135136del, NC_000013.11:g.46135136dup, NC_000013.11:g.46135135_46135136dup, NC_000013.11:g.46135136_46135137insAAAAAAAAAAAAAAAAAAAA, NC_000013.11:g.46135136_46135137insAAAAAAAAAAAAAAAAAAAAA, NC_000013.11:g.46135136_46135137insAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000013.10:g.46709270_46709271del, NC_000013.10:g.46709271del, NC_000013.10:g.46709271dup, NC_000013.10:g.46709270_46709271dup, NC_000013.10:g.46709271_46709272insAAAAAAAAAAAAAAAAAAAA, NC_000013.10:g.46709271_46709272insAAAAAAAAAAAAAAAAAAAAA, NC_000013.10:g.46709271_46709272insAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14914351673.

rs1491435167 has merged into rs554047551 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 13:46135135 (GRCh38)
13:46709270 (GRCh37)
Canonical SPDI:: NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:46135124:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LCP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000013.11:g.46135135_46135136del, NC_000013.11:g.46135136del, NC_000013.11:g.46135136dup, NC_000013.11:g.46135135_46135136dup, NC_000013.11:g.46135136_46135137insAAAAAAAAAAAAAAAAAAAA, NC_000013.11:g.46135136_46135137insAAAAAAAAAAAAAAAAAAAAA, NC_000013.11:g.46135136_46135137insAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000013.10:g.46709270_46709271del, NC_000013.10:g.46709271del, NC_000013.10:g.46709271dup, NC_000013.10:g.46709270_46709271dup, NC_000013.10:g.46709271_46709272insAAAAAAAAAAAAAAAAAAAA, NC_000013.10:g.46709271_46709272insAAAAAAAAAAAAAAAAAAAAA, NC_000013.10:g.46709271_46709272insAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14914120954.

rs1491412095 has merged into rs138830625 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATA>-,TA,TATATA,TATATATA,TATATATATA [Show Flanks]
Chromosome:: 13:46157265 (GRCh38)
13:46731400 (GRCh37)
Canonical SPDI:: NC_000013.11:46157257:ATATATATATA:ATATATA,NC_000013.11:46157257:ATATATATATA:ATATATATA,NC_000013.11:46157257:ATATATATATA:ATATATATATATA,NC_000013.11:46157257:ATATATATATA:ATATATATATATATA,NC_000013.11:46157257:ATATATATATA:ATATATATATATATATA
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATA=0./0 (ALFA)
AT=0.12143/544 (Estonian)
AT=0.14333/86 (NorthernSweden)
AT=0.17335/173 (GoNL)
AT=0.175/7 (GENOME_DK)
AT=0.17891/896 (1000Genomes)
AT=0.32075/68 (Vietnamese)
AT=0.34225/627 (Korea1K)
HGVS:: NC_000013.11:g.46157259TA[3], NC_000013.11:g.46157259TA[4], NC_000013.11:g.46157259TA[6], NC_000013.11:g.46157259TA[7], NC_000013.11:g.46157259TA[8], NC_000013.10:g.46731394TA[3], NC_000013.10:g.46731394TA[4], NC_000013.10:g.46731394TA[6], NC_000013.10:g.46731394TA[7], NC_000013.10:g.46731394TA[8]

Select item 14913322975.

rs1491332297 has merged into rs71074757 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 13:46135757 (GRCh38)
13:46709892 (GRCh37)
Canonical SPDI:: NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:46135743:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.4131/1592 (ALSPAC)
HGVS:: NC_000013.11:g.46135757_46135763del, NC_000013.11:g.46135760_46135763del, NC_000013.11:g.46135761_46135763del, NC_000013.11:g.46135762_46135763del, NC_000013.11:g.46135763del, NC_000013.11:g.46135763dup, NC_000013.11:g.46135762_46135763dup, NC_000013.11:g.46135761_46135763dup, NC_000013.11:g.46135760_46135763dup, NC_000013.11:g.46135759_46135763dup, NC_000013.11:g.46135757_46135763dup, NC_000013.11:g.46135754_46135763dup, NC_000013.11:g.46135747_46135763dup, NC_000013.10:g.46709892_46709898del, NC_000013.10:g.46709895_46709898del, NC_000013.10:g.46709896_46709898del, NC_000013.10:g.46709897_46709898del, NC_000013.10:g.46709898del, NC_000013.10:g.46709898dup, NC_000013.10:g.46709897_46709898dup, NC_000013.10:g.46709896_46709898dup, NC_000013.10:g.46709895_46709898dup, NC_000013.10:g.46709894_46709898dup, NC_000013.10:g.46709892_46709898dup, NC_000013.10:g.46709889_46709898dup, NC_000013.10:g.46709882_46709898dup

Select item 14913044676.

rs1491304467 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 13:46163633 (GRCh38)
13:46737768 (GRCh37)
Canonical SPDI:: NC_000013.11:46163632:TA:
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.01071/127 (ALFA)
HGVS:: NC_000013.11:g.46163633_46163634del, NC_000013.10:g.46737768_46737769del

Select item 14911794607.

rs1491179460 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG,CG [Show Flanks]
Chromosome:: 13:46176900 (GRCh38)
13:46751036 (GRCh37)
Canonical SPDI:: NC_000013.11:46176900:G:GAG,NC_000013.11:46176900:G:GCG
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCG=0./0 (ALFA)
GA=0.00004/1 (TOMMO)
GC=0.00337/2 (NorthernSweden)
HGVS:: NC_000013.11:g.46176901_46176902insAG, NC_000013.11:g.46176901_46176902insCG, NC_000013.10:g.46751036_46751037insAG, NC_000013.10:g.46751036_46751037insCG, XM_005266374.3:c.-8463_-8462insTC, XM_005266374.3:c.-8463_-8462insGC

Select item 14911376708.

rs1491137670 has merged into rs1205897294 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAGAGAG>-,AGAG,AGAGAG,AGAGAGAGAG [Show Flanks]
Chromosome:: 13:46176916 (GRCh38)
13:46751051 (GRCh37)
Canonical SPDI:: NC_000013.11:46176910:GAGAGAGAGAGAG:GAGAG,NC_000013.11:46176910:GAGAGAGAGAGAG:GAGAGAGAG,NC_000013.11:46176910:GAGAGAGAGAGAG:GAGAGAGAGAG,NC_000013.11:46176910:GAGAGAGAGAGAG:GAGAGAGAGAGAGAG
Gene:: LCP1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGAGAGAG=0./0 (ALFA)
-=0.000015/4 (TOPMED)
GA=0.000446/2 (Estonian)
GA=0.003279/21 (1000Genomes)
-=0.020766/77 (TWINSUK)
-=0.023093/89 (ALSPAC)
HGVS:: NC_000013.11:g.46176912AG[2], NC_000013.11:g.46176912AG[4], NC_000013.11:g.46176912AG[5], NC_000013.11:g.46176912AG[7], NC_000013.10:g.46751047AG[2], NC_000013.10:g.46751047AG[4], NC_000013.10:g.46751047AG[5], NC_000013.10:g.46751047AG[7], XM_005266374.3:c.-8484TC[2], XM_005266374.3:c.-8484TC[4], XM_005266374.3:c.-8484TC[5], XM_005266374.3:c.-8484TC[7]

Select item 14910815779.

rs1491081577 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 13:46182388 (GRCh38)
13:46756523 (GRCh37)
Canonical SPDI:: NC_000013.11:46182387:TG:
Gene:: LCP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000013.11:g.46182388_46182389del, NC_000013.10:g.46756523_46756524del

Select item 149107094410.

rs1491070944 has merged into rs143380629 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,TTT,TTTT [Show Flanks]
Chromosome:: 13:46174311 (GRCh38)
13:46748446 (GRCh37)
Canonical SPDI:: NC_000013.11:46174304:TTTTTTTT:TTTTTT,NC_000013.11:46174304:TTTTTTTT:TTTTTTTTT,NC_000013.11:46174304:TTTTTTTT:TTTTTTTTTT
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
T=0.12031/539 (Estonian)
T=0.14167/85 (NorthernSweden)
T=0.15/6 (GENOME_DK)
T=0.15453/573 (TWINSUK)
T=0.15802/609 (ALSPAC)
T=0.19708/987 (1000Genomes)
T=0.27784/509 (Korea1K)
T=0.28538/4783 (TOMMO)
HGVS:: NC_000013.11:g.46174311_46174312del, NC_000013.11:g.46174312dup, NC_000013.11:g.46174311_46174312dup, NC_000013.10:g.46748446_46748447del, NC_000013.10:g.46748447dup, NC_000013.10:g.46748446_46748447dup, XM_005266374.3:c.-5868_-5867del, XM_005266374.3:c.-5867dup, XM_005266374.3:c.-5868_-5867dup

Select item 149103376211.

rs1491033762 has merged into rs763693784 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A [Show Flanks]
Chromosome:: 13:46174315 (GRCh38)
13:46748450 (GRCh37)
Canonical SPDI:: NC_000013.11:46174312:AAAA:AA,NC_000013.11:46174312:AAAA:AAA
Gene:: LCP1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000019/5 (TOPMED)
HGVS:: NC_000013.11:g.46174315_46174316del, NC_000013.11:g.46174316del, NC_000013.10:g.46748450_46748451del, NC_000013.10:g.46748451del, XM_005266374.3:c.-5876_-5875del, XM_005266374.3:c.-5875del

Select item 149101538512.

rs1491015385 has merged into rs35821183 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT [Show Flanks]
Chromosome:: 13:46182382 (GRCh38)
13:46756517 (GRCh37)
Canonical SPDI:: NC_000013.11:46182370:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000013.11:46182370:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000013.11:46182370:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000013.11:46182370:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000013.11:46182370:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000013.11:46182370:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000013.11:46182370:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000013.11:46182370:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000013.11:46182370:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT
Gene:: LCP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTT=0./0 (ALFA)
-=0.1593/798 (1000Genomes)
HGVS:: NC_000013.11:g.46182382_46182388del, NC_000013.11:g.46182385_46182388del, NC_000013.11:g.46182386_46182388del, NC_000013.11:g.46182387_46182388del, NC_000013.11:g.46182388del, NC_000013.11:g.46182388dup, NC_000013.11:g.46182387_46182388dup, NC_000013.11:g.46182386_46182388dup, NC_000013.11:g.46182385_46182388dup, NC_000013.10:g.46756517_46756523del, NC_000013.10:g.46756520_46756523del, NC_000013.10:g.46756521_46756523del, NC_000013.10:g.46756522_46756523del, NC_000013.10:g.46756523del, NC_000013.10:g.46756523dup, NC_000013.10:g.46756522_46756523dup, NC_000013.10:g.46756521_46756523dup, NC_000013.10:g.46756520_46756523dup

Select item 149099057613.

rs1490990576 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:46151713 (GRCh38)
13:46725848 (GRCh37)
Canonical SPDI:: NC_000013.11:46151712:T:G
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.46151713T>G, NC_000013.10:g.46725848T>G

Select item 149096434314.

rs1490964343 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:46153028 (GRCh38)
13:46727163 (GRCh37)
Canonical SPDI:: NC_000013.11:46153027:T:C
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.46153028T>C, NC_000013.10:g.46727163T>C

Select item 149091173815.

rs1490911738 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:46134706 (GRCh38)
13:46708841 (GRCh37)
Canonical SPDI:: NC_000013.11:46134705:T:C
Gene:: LCP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000342/1 (KOREAN)
C=0.000546/1 (Korea1K)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000013.11:g.46134706T>C, NC_000013.10:g.46708841T>C

Select item 149088018516.

rs1490880185 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:46126312 (GRCh38)
13:46700447 (GRCh37)
Canonical SPDI:: NC_000013.11:46126311:G:C
Gene:: LCP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0.0002/1 (ALFA)
C=0.0002/1 (Estonian)
HGVS:: NC_000013.11:g.46126312G>C, NC_000013.10:g.46700447G>C, NM_002298.5:c.*1279C>G, NM_002298.4:c.*1279C>G, XM_005266374.3:c.*1279C>G, XM_005266374.2:c.*1279C>G, XM_005266374.1:c.*1279C>G, XM_047430303.1:c.*1279C>G, XM_047430304.1:c.*1279C>G

Select item 149085930417.

rs1490859304 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:46135516 (GRCh38)
13:46709651 (GRCh37)
Canonical SPDI:: NC_000013.11:46135515:T:C
Gene:: LCP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.46135516T>C, NC_000013.10:g.46709651T>C

Select item 149072240618.

rs1490722406 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:46175992 (GRCh38)
13:46750127 (GRCh37)
Canonical SPDI:: NC_000013.11:46175991:T:C
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.46175992T>C, NC_000013.10:g.46750127T>C, XM_005266374.3:c.-7554A>G

Select item 149068457519.

rs1490684575 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:46161117 (GRCh38)
13:46735252 (GRCh37)
Canonical SPDI:: NC_000013.11:46161116:G:C
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.46161117G>C, NC_000013.10:g.46735252G>C

Select item 149055796520.

rs1490557965 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:46176411 (GRCh38)
13:46750546 (GRCh37)
Canonical SPDI:: NC_000013.11:46176410:C:A
Gene:: LCP1 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.46176411C>A, NC_000013.10:g.46750546C>A, XM_005266374.3:c.-7973G>T

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