SNP Links for Gene (Select 3976) - SNP

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Select item 14906160861.

rs1490616086 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 22:30246486 (GRCh38)
22:30642475 (GRCh37)
Canonical SPDI:: NC_000022.11:30246485:G:C,NC_000022.11:30246485:G:T
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.30246486G>C, NC_000022.11:g.30246486G>T, NC_000022.10:g.30642475G>C, NC_000022.10:g.30642475G>T, NG_008721.1:g.5322C>G, NG_008721.1:g.5322C>A, XM_047441361.1:c.19C>G, XM_047441361.1:c.19C>A, NM_052856.1:c.-17G>C, NM_052856.1:c.-17G>T, NR_148946.1:n.277G>C, NR_148946.1:n.277G>T, XP_047297317.1:p.Arg7Gly, XP_047297317.1:p.Arg7Ser

Select item 14903582182.

rs1490358218 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:30245954 (GRCh38)
22:30641943 (GRCh37)
Canonical SPDI:: NC_000022.11:30245953:A:G
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.30245954A>G, NC_000022.10:g.30641943A>G, NG_008721.1:g.5854T>C

Select item 14902456333.

rs1490245633 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:30246464 (GRCh38)
22:30642453 (GRCh37)
Canonical SPDI:: NC_000022.11:30246463:C:T
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.30246464C>T, NC_000022.10:g.30642453C>T, NG_008721.1:g.5344G>A, XM_047441361.1:c.41G>A, NM_052856.1:c.-39C>T, NR_148946.1:n.255C>T, XP_047297317.1:p.Arg14Gln

Select item 14898859364.

rs1489885936 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:30246699 (GRCh38)
22:30642688 (GRCh37)
Canonical SPDI:: NC_000022.11:30246698:G:A,NC_000022.11:30246698:G:T
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency
MAF:: T=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.30246699G>A, NC_000022.11:g.30246699G>T, NC_000022.10:g.30642688G>A, NC_000022.10:g.30642688G>T, NG_008721.1:g.5109C>T, NG_008721.1:g.5109C>A, NM_002309.5:c.-4C>T, NM_002309.5:c.-4C>A, NM_002309.4:c.-4C>T, NM_002309.4:c.-4C>A, NM_001257135.2:c.-4C>T, NM_001257135.2:c.-4C>A, NM_001257135.1:c.-4C>T, NM_001257135.1:c.-4C>A, XM_047441361.1:c.-195C>T, XM_047441361.1:c.-195C>A, NM_052856.1:c.197G>A, NM_052856.1:c.197G>T, NR_148946.1:n.490G>A, NR_148946.1:n.490G>T

Select item 14894343695.

rs1489434369 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 22:30246791 (GRCh38)
22:30642780 (GRCh37)
Canonical SPDI:: NC_000022.11:30246790:C:G,NC_000022.11:30246790:C:T
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.30246791C>G, NC_000022.11:g.30246791C>T, NC_000022.10:g.30642780C>G, NC_000022.10:g.30642780C>T, NG_008721.1:g.5017G>C, NG_008721.1:g.5017G>A, NM_002309.4:c.-96G>C, NM_002309.4:c.-96G>A, NM_001257135.1:c.-96G>C, NM_001257135.1:c.-96G>A, NM_052856.1:c.289C>G, NM_052856.1:c.289C>T, NR_148946.1:n.582C>G, NR_148946.1:n.582C>T

Select item 14894316126.

rs1489431612 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:30245376 (GRCh38)
22:30641365 (GRCh37)
Canonical SPDI:: NC_000022.11:30245375:G:A
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000022.11:g.30245376G>A, NC_000022.10:g.30641365G>A, NG_008721.1:g.6432C>T

Select item 14892015267.

rs1489201526 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:30241724 (GRCh38)
22:30637713 (GRCh37)
Canonical SPDI:: NC_000022.11:30241723:C:A
Gene:: LIF (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.30241724C>A, NC_000022.10:g.30637713C>A, NG_008721.1:g.10084G>T, NM_002309.5:c.*1927G>T, NM_002309.4:c.*1927G>T, NM_001257135.2:c.*2090G>T, NM_001257135.1:c.*2090G>T, XM_047441361.1:c.*1927G>T

Select item 14890392038.

rs1489039203 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 22:30243957 (GRCh38)
22:30639946 (GRCh37)
Canonical SPDI:: NC_000022.11:30243956:C:G
Gene:: LIF (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.30243957C>G, NC_000022.10:g.30639946C>G, NG_008721.1:g.7851G>C, NM_002309.5:c.303G>C, NM_002309.4:c.303G>C, NM_001257135.2:c.124G>C, NM_001257135.1:c.124G>C, XM_047441361.1:c.621G>C, NP_002300.1:p.Lys101Asn, NP_001244064.1:p.Ala42Pro, XP_047297317.1:p.Lys207Asn

Select item 14888379489.

rs1488837948 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:30240950 (GRCh38)
22:30636939 (GRCh37)
Canonical SPDI:: NC_000022.11:30240949:T:C
Gene:: LIF (Varview), LIF-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.30240950T>C, NC_000022.10:g.30636939T>C, NG_008721.1:g.10858A>G, NM_002309.5:c.*2701A>G, NM_002309.4:c.*2701A>G, NM_001257135.2:c.*2864A>G, NM_001257135.1:c.*2864A>G, XM_047441361.1:c.*2701A>G

Select item 148851587010.

rs1488515870 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:30243279 (GRCh38)
22:30639268 (GRCh37)
Canonical SPDI:: NC_000022.11:30243278:C:T
Gene:: LIF (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
HGVS:: NC_000022.11:g.30243279C>T, NC_000022.10:g.30639268C>T, NG_008721.1:g.8529G>A, NM_002309.5:c.*372G>A, NM_002309.4:c.*372G>A, NM_001257135.2:c.*535G>A, NM_001257135.1:c.*535G>A, XM_047441361.1:c.*372G>A

Select item 148848468911.

rs1488484689 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:30244780 (GRCh38)
22:30640769 (GRCh37)
Canonical SPDI:: NC_000022.11:30244779:C:T
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,missense_variant,coding_sequence_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.30244780C>T, NC_000022.10:g.30640769C>T, NG_008721.1:g.7028G>A, NM_002309.5:c.173G>A, NM_002309.4:c.173G>A, XM_047441361.1:c.491G>A, NP_002300.1:p.Ser58Asn, XP_047297317.1:p.Ser164Asn

Select item 148842590612.

rs1488425906 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:30248327 (GRCh38)
22:30644316 (GRCh37)
Canonical SPDI:: NC_000022.11:30248326:G:A
Gene:: LIF (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.00006/1 (TOMMO)
HGVS:: NC_000022.11:g.30248327G>A, NC_000022.10:g.30644316G>A, NG_008721.1:g.3481C>T

Select item 148783803313.

rs1487838033 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 22:30240885 (GRCh38)
22:30636874 (GRCh37)
Canonical SPDI:: NC_000022.11:30240884:A:C,NC_000022.11:30240884:A:G
Gene:: LIF (Varview), LIF-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
HGVS:: NC_000022.11:g.30240885A>C, NC_000022.11:g.30240885A>G, NC_000022.10:g.30636874A>C, NC_000022.10:g.30636874A>G, NG_008721.1:g.10923T>G, NG_008721.1:g.10923T>C, NM_002309.5:c.*2766T>G, NM_002309.5:c.*2766T>C, NM_002309.4:c.*2766T>G, NM_002309.4:c.*2766T>C, NM_001257135.2:c.*2929T>G, NM_001257135.2:c.*2929T>C, NM_001257135.1:c.*2929T>G, NM_001257135.1:c.*2929T>C, XM_047441361.1:c.*2766T>G, XM_047441361.1:c.*2766T>C

Select item 148756883014.

rs1487568830 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:30242018 (GRCh38)
22:30638007 (GRCh37)
Canonical SPDI:: NC_000022.11:30242017:G:A
Gene:: LIF (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.30242018G>A, NC_000022.10:g.30638007G>A, NG_008721.1:g.9790C>T, NM_002309.5:c.*1633C>T, NM_002309.4:c.*1633C>T, NM_001257135.2:c.*1796C>T, NM_001257135.1:c.*1796C>T, XM_047441361.1:c.*1633C>T

Select item 148747997215.

rs1487479972 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:30244408 (GRCh38)
22:30640397 (GRCh37)
Canonical SPDI:: NC_000022.11:30244407:G:A
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.30244408G>A, NC_000022.10:g.30640397G>A, NG_008721.1:g.7400C>T

Select item 148741408016.

rs1487414080 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:30247392 (GRCh38)
22:30643381 (GRCh37)
Canonical SPDI:: NC_000022.11:30247391:C:T
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.30247392C>T, NC_000022.10:g.30643381C>T, NG_008721.1:g.4416G>A

Select item 148709330217.

rs1487093302 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:30243691 (GRCh38)
22:30639680 (GRCh37)
Canonical SPDI:: NC_000022.11:30243690:T:C
Gene:: LIF (Varview)
Functional Consequence:: 3_prime_UTR_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
C=0.000035/1 (TOMMO)
HGVS:: NC_000022.11:g.30243691T>C, NC_000022.10:g.30639680T>C, NG_008721.1:g.8117A>G, NM_002309.5:c.569A>G, NM_002309.4:c.569A>G, NM_001257135.2:c.*123A>G, NM_001257135.1:c.*123A>G, XM_047441361.1:c.887A>G, NP_002300.1:p.Lys190Arg, XP_047297317.1:p.Lys296Arg

Select item 148672105418.

rs1486721054 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:30243587 (GRCh38)
22:30639576 (GRCh37)
Canonical SPDI:: NC_000022.11:30243586:G:C
Gene:: LIF (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.30243587G>C, NC_000022.10:g.30639576G>C, NG_008721.1:g.8221C>G, NM_002309.5:c.*64C>G, NM_002309.4:c.*64C>G, NM_001257135.2:c.*227C>G, NM_001257135.1:c.*227C>G, XM_047441361.1:c.*64C>G

Select item 148626161219.

rs1486261612 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 22:30246025 (GRCh38)
22:30642014 (GRCh37)
Canonical SPDI:: NC_000022.11:30246024:C:A,NC_000022.11:30246024:C:G
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000061/1 (ALFA)
G=0.000004/1 (TOPMED)
A=0.000223/1 (Estonian)
HGVS:: NC_000022.11:g.30246025C>A, NC_000022.11:g.30246025C>G, NC_000022.10:g.30642014C>A, NC_000022.10:g.30642014C>G, NG_008721.1:g.5783G>T, NG_008721.1:g.5783G>C

Select item 148616297820.

rs1486162978 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:30246307 (GRCh38)
22:30642296 (GRCh37)
Canonical SPDI:: NC_000022.11:30246306:G:A
Gene:: LIF (Varview), LIF-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.30246307G>A, NC_000022.10:g.30642296G>A, NG_008721.1:g.5501C>T, XM_047441361.1:c.198C>T, NM_052856.1:c.-196G>A, NR_148946.1:n.98G>A

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