SNP Links for Gene (Select 401039) - SNP

Links from Gene

Items: 1 to 20 of 2182

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Select item 14906753521.

rs1490675352 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:238927607 (GRCh38)
2:239849303 (GRCh37)
Canonical SPDI:: NC_000002.12:238927606:G:A,NC_000002.12:238927606:G:C,NC_000002.12:238927606:G:T
Gene:: LINC01940 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.238927607G>A, NC_000002.12:g.238927607G>C, NC_000002.12:g.238927607G>T, NC_000002.11:g.239849303G>A, NC_000002.11:g.239849303G>C, NC_000002.11:g.239849303G>T

Select item 14896165832.

rs1489616583 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:238924610 (GRCh38)
2:239846306 (GRCh37)
Canonical SPDI:: NC_000002.12:238924609:C:T
Gene:: LINC01940 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.238924610C>T, NC_000002.11:g.239846306C>T

Select item 14894859903.

rs1489485990 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:238927676 (GRCh38)
2:239849372 (GRCh37)
Canonical SPDI:: NC_000002.12:238927675:A:C
Gene:: LINC01940 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.238927676A>C, NC_000002.11:g.239849372A>C

Select item 14891648264.

rs1489164826 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:238921900 (GRCh38)
2:239843596 (GRCh37)
Canonical SPDI:: NC_000002.12:238921899:A:G
Gene:: LINC01940 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000035/1 (TOMMO)
HGVS:: NC_000002.12:g.238921900A>G, NC_000002.11:g.239843596A>G

Select item 14889167835.

rs1488916783 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:238921472 (GRCh38)
2:239843168 (GRCh37)
Canonical SPDI:: NC_000002.12:238921471:C:A
Gene:: LINC01940 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.238921472C>A, NC_000002.11:g.239843168C>A, NR_034162.2:n.2972G>T, NR_034162.1:n.2972G>T, NM_001001698.1:c.*1924G>T

Select item 14885248366.

rs1488524836 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:238924996 (GRCh38)
2:239846692 (GRCh37)
Canonical SPDI:: NC_000002.12:238924995:C:T
Gene:: LINC01940 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.238924996C>T, NC_000002.11:g.239846692C>T, NR_034162.2:n.906G>A, NR_034162.1:n.906G>A, NM_001001698.1:c.683G>A

Select item 14885066767.

rs1488506676 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:238927280 (GRCh38)
2:239848976 (GRCh37)
Canonical SPDI:: NC_000002.12:238927279:C:G,NC_000002.12:238927279:C:T
Gene:: LINC01940 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000532/9 (TOMMO)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000002.12:g.238927280C>G, NC_000002.12:g.238927280C>T, NC_000002.11:g.239848976C>G, NC_000002.11:g.239848976C>T

Select item 14882573328.

rs1488257332 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:238925425 (GRCh38)
2:239847121 (GRCh37)
Canonical SPDI:: NC_000002.12:238925424:C:T
Gene:: LINC01940 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.238925425C>T, NC_000002.11:g.239847121C>T, NR_034162.2:n.477G>A, NR_034162.1:n.477G>A, NM_001001698.1:c.254G>A

Select item 14882074209.

rs1488207420 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:238927471 (GRCh38)
2:239849167 (GRCh37)
Canonical SPDI:: NC_000002.12:238927470:C:T
Gene:: LINC01940 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000054/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.000106/2 (TOMMO)
T=0.000223/1 (Estonian)
T=0.000342/1 (KOREAN)
HGVS:: NC_000002.12:g.238927471C>T, NC_000002.11:g.239849167C>T

Select item 148800247810.

rs1488002478 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:238919913 (GRCh38)
2:239841609 (GRCh37)
Canonical SPDI:: NC_000002.12:238919912:A:G
Gene:: LINC01940 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000002.12:g.238919913A>G, NC_000002.11:g.239841609A>G

Select item 148788017711.

rs1487880177 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:238925775 (GRCh38)
2:239847471 (GRCh37)
Canonical SPDI:: NC_000002.12:238925774:A:G
Gene:: LINC01940 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.238925775A>G, NC_000002.11:g.239847471A>G

Select item 148667154312.

rs1486671543 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:238919391 (GRCh38)
2:239841087 (GRCh37)
Canonical SPDI:: NC_000002.12:238919390:A:C
Gene:: LINC01940 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.238919391A>C, NC_000002.11:g.239841087A>C, NR_034162.2:n.3400T>G, NR_034162.1:n.3400T>G, NM_001001698.1:c.*2352T>G

Select item 148655370613.

rs1486553706 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:238918928 (GRCh38)
2:239840624 (GRCh37)
Canonical SPDI:: NC_000002.12:238918927:G:T
Gene:: LINC01940 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/1 (ALFA)
HGVS:: NC_000002.12:g.238918928G>T, NC_000002.11:g.239840624G>T

Select item 148581005714.

rs1485810057 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:238918918 (GRCh38)
2:239840614 (GRCh37)
Canonical SPDI:: NC_000002.12:238918917:T:C
Gene:: LINC01940 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000002.12:g.238918918T>C, NC_000002.11:g.239840614T>C

Select item 148506038915.

rs1485060389 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:238923116 (GRCh38)
2:239844812 (GRCh37)
Canonical SPDI:: NC_000002.12:238923115:G:A
Gene:: LINC01940 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000053/1 (ALFA)
A=0.000064/9 (GnomAD)
A=0.000072/19 (TOPMED)
A=0.000223/1 (Estonian)
HGVS:: NC_000002.12:g.238923116G>A, NC_000002.11:g.239844812G>A, NR_034162.2:n.2319C>T, NR_034162.1:n.2319C>T, NM_001001698.1:c.*1271C>T

Select item 148490986416.

rs1484909864 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:238926881 (GRCh38)
2:239848577 (GRCh37)
Canonical SPDI:: NC_000002.12:238926880:A:G
Gene:: LINC01940 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.238926881A>G, NC_000002.11:g.239848577A>G

Select item 148464022417.

rs1484640224 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:238919652 (GRCh38)
2:239841348 (GRCh37)
Canonical SPDI:: NC_000002.12:238919651:A:G
Gene:: LINC01940 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.238919652A>G, NC_000002.11:g.239841348A>G

Select item 148457468918.

rs1484574689 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:238925995 (GRCh38)
2:239847691 (GRCh37)
Canonical SPDI:: NC_000002.12:238925994:G:C
Gene:: LINC01940 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.238925995G>C, NC_000002.11:g.239847691G>C, NR_034162.2:n.157C>G, NR_034162.1:n.157C>G, NM_001001698.1:c.-67C>G

Select item 148453264819.

rs1484532648 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:238920564 (GRCh38)
2:239842260 (GRCh37)
Canonical SPDI:: NC_000002.12:238920563:C:T
Gene:: LINC01940 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.238920564C>T, NC_000002.11:g.239842260C>T, NR_034162.2:n.3078G>A, NR_034162.1:n.3078G>A, NM_001001698.1:c.*2030G>A

Select item 148418013220.

rs1484180132 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:238927369 (GRCh38)
2:239849065 (GRCh37)
Canonical SPDI:: NC_000002.12:238927368:T:A
Gene:: LINC01940 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.238927369T>A, NC_000002.11:g.239849065T>A

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