SNP Links for Gene (Select 401535) - SNP

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Select item 14915287501.

rs1491528750 has merged into rs11390399 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTT,TTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 9:87147693 (GRCh38)
9:89762608 (GRCh37)
Canonical SPDI:: NC_000009.12:87147684:TTTTTTTTTT:TTTTTTTT,NC_000009.12:87147684:TTTTTTTTTT:TTTTTTTTT,NC_000009.12:87147684:TTTTTTTTTT:TTTTTTTTTTT,NC_000009.12:87147684:TTTTTTTTTT:TTTTTTTTTTTT,NC_000009.12:87147684:TTTTTTTTTT:TTTTTTTTTTTTT,NC_000009.12:87147684:TTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000009.12:87147684:TTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000009.12:87147684:TTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC02872 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.148/741 (1000Genomes)
-=0.1958/796 (Estonian)
-=0.225/9 (GENOME_DK)
HGVS:: NC_000009.12:g.87147693_87147694del, NC_000009.12:g.87147694del, NC_000009.12:g.87147694dup, NC_000009.12:g.87147693_87147694dup, NC_000009.12:g.87147692_87147694dup, NC_000009.12:g.87147689_87147694dup, NC_000009.12:g.87147694_87147695insTTTTTTTTTTT, NC_000009.12:g.87147694_87147695insTTTTTTTTTTTTTTT, NC_000009.11:g.89762608_89762609del, NC_000009.11:g.89762609del, NC_000009.11:g.89762609dup, NC_000009.11:g.89762608_89762609dup, NC_000009.11:g.89762607_89762609dup, NC_000009.11:g.89762604_89762609dup, NC_000009.11:g.89762609_89762610insTTTTTTTTTTT, NC_000009.11:g.89762609_89762610insTTTTTTTTTTTTTTT

Select item 14913799612.

rs1491379961 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->A
Chromosome:: no mapping
Canonical SPDI:

Select item 14908972403.

rs1490897240 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 9:87155765 (GRCh38)
9:89770681 (GRCh37)
Canonical SPDI:: NC_000009.12:87155765:AAAAAAA:AAAAAAAA
Gene:: LINC02872 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
A=0.000212/4 (TOMMO)
A=0.003275/6 (Korea1K)
HGVS:: NC_000009.12:g.87155772dup, NC_000009.11:g.89770687dup

Select item 14908276524.

rs1490827652 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:87156880 (GRCh38)
9:89771795 (GRCh37)
Canonical SPDI:: NC_000009.12:87156879:T:C
Gene:: LINC02872 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.87156880T>C, NC_000009.11:g.89771795T>C, NM_001001709.2:c.*110T>C, NR_161226.1:n.563T>C

Select item 14905345875.

rs1490534587 [Homo sapiens]

Variant type:: DEL
Alleles:: GGGAACTGGCTGGCCGCGGTCCCTT>- [Show Flanks]
Chromosome:: 9:87148518 (GRCh38)
9:89763433 (GRCh37)
Canonical SPDI:: NC_000009.12:87148517:GGGAACTGGCTGGCCGCGGTCCCTT:
Gene:: LINC02872 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.87148518_87148542del, NC_000009.11:g.89763433_89763457del

Select item 14899727906.

rs1489972790 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:87156393 (GRCh38)
9:89771308 (GRCh37)
Canonical SPDI:: NC_000009.12:87156392:C:A
Gene:: LINC02872 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.87156393C>A, NC_000009.11:g.89771308C>A

Select item 14897839487.

rs1489783948 has merged into rs5898976 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA [Show Flanks]
Chromosome:: 9:87147256 (GRCh38)
9:89762171 (GRCh37)
Canonical SPDI:: NC_000009.12:87147248:AAAAAAAAA:AAAAAAA,NC_000009.12:87147248:AAAAAAAAA:AAAAAAAA,NC_000009.12:87147248:AAAAAAAAA:AAAAAAAAAA
Gene:: LINC02872 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
A=0.063865/117 (Korea1K)
A=0.121174/607 (1000Genomes)
A=0.148494/39305 (TOPMED)
A=0.17567/787 (Estonian)
A=0.180602/108 (NorthernSweden)
A=0.203883/756 (TWINSUK)
A=0.211423/211 (GoNL)
A=0.213804/824 (ALSPAC)
A=0.225/9 (GENOME_DK)
HGVS:: NC_000009.12:g.87147256_87147257del, NC_000009.12:g.87147257del, NC_000009.12:g.87147257dup, NC_000009.11:g.89762171_89762172del, NC_000009.11:g.89762172del, NC_000009.11:g.89762172dup

Select item 14895887618.

rs1489588761 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:87154459 (GRCh38)
9:89769374 (GRCh37)
Canonical SPDI:: NC_000009.12:87154458:C:A
Gene:: LINC02872 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000342/1 (KOREAN)
HGVS:: NC_000009.12:g.87154459C>A, NC_000009.11:g.89769374C>A

Select item 14892863259.

rs1489286325 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>- [Show Flanks]
Chromosome:: 9:87150338 (GRCh38)
9:89765253 (GRCh37)
Canonical SPDI:: NC_000009.12:87150334:CCCCC:CCC
Gene:: LINC02872 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.87150338_87150339del, NC_000009.11:g.89765253_89765254del

Select item 148920988210.

rs1489209882 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:87159135 (GRCh38)
9:89774050 (GRCh37)
Canonical SPDI:: NC_000009.12:87159134:C:A,NC_000009.12:87159134:C:T
Gene:: LINC02872 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.87159135C>A, NC_000009.12:g.87159135C>T, NC_000009.11:g.89774050C>A, NC_000009.11:g.89774050C>T, NM_001001709.2:c.*2365C>A, NM_001001709.2:c.*2365C>T, NR_161226.1:n.2818C>A, NR_161226.1:n.2818C>T

Select item 148833959011.

rs1488339590 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:87149800 (GRCh38)
9:89764715 (GRCh37)
Canonical SPDI:: NC_000009.12:87149799:G:A,NC_000009.12:87149799:G:C
Gene:: LINC02872 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.87149800G>A, NC_000009.12:g.87149800G>C, NC_000009.11:g.89764715G>A, NC_000009.11:g.89764715G>C

Select item 148826421512.

rs1488264215 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:87157357 (GRCh38)
9:89772272 (GRCh37)
Canonical SPDI:: NC_000009.12:87157356:C:T
Gene:: LINC02872 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.87157357C>T, NC_000009.11:g.89772272C>T, NM_001001709.2:c.*587C>T, NR_161226.1:n.1040C>T

Select item 148819098913.

rs1488190989 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 9:87158468 (GRCh38)
9:89773383 (GRCh37)
Canonical SPDI:: NC_000009.12:87158467:T:A,NC_000009.12:87158467:T:G
Gene:: LINC02872 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000029/4 (GnomAD)
HGVS:: NC_000009.12:g.87158468T>A, NC_000009.12:g.87158468T>G, NC_000009.11:g.89773383T>A, NC_000009.11:g.89773383T>G, NM_001001709.2:c.*1698T>A, NM_001001709.2:c.*1698T>G, NR_161226.1:n.2151T>A, NR_161226.1:n.2151T>G

Select item 148818697114.

rs1488186971 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:87148601 (GRCh38)
9:89763516 (GRCh37)
Canonical SPDI:: NC_000009.12:87148600:G:A,NC_000009.12:87148600:G:C
Gene:: LINC02872 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
HGVS:: NC_000009.12:g.87148601G>A, NC_000009.12:g.87148601G>C, NC_000009.11:g.89763516G>A, NC_000009.11:g.89763516G>C

Select item 148813698315.

rs1488136983 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:87160028 (GRCh38)
9:89774943 (GRCh37)
Canonical SPDI:: NC_000009.12:87160027:T:C
Gene:: LINC02872 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000198/3 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000009.12:g.87160028T>C, NC_000009.11:g.89774943T>C

Select item 148737657716.

rs1487376577 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:87158767 (GRCh38)
9:89773682 (GRCh37)
Canonical SPDI:: NC_000009.12:87158766:A:G
Gene:: LINC02872 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000064/17 (TOPMED)
G=0.000078/11 (GnomAD)
HGVS:: NC_000009.12:g.87158767A>G, NC_000009.11:g.89773682A>G, NM_001001709.2:c.*1997A>G, NR_161226.1:n.2450A>G

Select item 148717119117.

rs1487171191 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:87157857 (GRCh38)
9:89772772 (GRCh37)
Canonical SPDI:: NC_000009.12:87157856:T:C
Gene:: LINC02872 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.87157857T>C, NC_000009.11:g.89772772T>C, NM_001001709.2:c.*1087T>C, NR_161226.1:n.1540T>C

Select item 148707180618.

rs1487071806 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:87147613 (GRCh38)
9:89762528 (GRCh37)
Canonical SPDI:: NC_000009.12:87147612:C:G
Gene:: LINC02872 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.87147613C>G, NC_000009.11:g.89762528C>G

Select item 148661206719.

rs1486612067 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:87159181 (GRCh38)
9:89774096 (GRCh37)
Canonical SPDI:: NC_000009.12:87159180:A:C
Gene:: LINC02872 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.87159181A>C, NC_000009.11:g.89774096A>C, NM_001001709.2:c.*2411A>C, NR_161226.1:n.2864A>C

Select item 148642946420.

rs1486429464 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:87152959 (GRCh38)
9:89767874 (GRCh37)
Canonical SPDI:: NC_000009.12:87152958:A:G
Gene:: LINC02872 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.87152959A>G, NC_000009.11:g.89767874A>G

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