SNP Links for Gene (Select 4018) - SNP

Variant type:: INS
Alleles:: ->TG [Show Flanks]
Chromosome:: 6:160643082 (GRCh38)
6:161064115 (GRCh37)
Canonical SPDI:: NC_000006.12:160643082::TG
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TG=0./0 (ALFA)
TG=0.00001/1 (GnomAD)
HGVS:: NC_000006.12:g.160643082_160643083insTG, NC_000006.11:g.161064114_161064115insTG, NG_016147.1:g.28293_28294insCA

Select item 14915265706.

rs1491526570 [Homo sapiens]

Variant type:: INS
Alleles:: ->TACC,TATATATATATATATATGTATG,TGGG [Show Flanks]
Chromosome:: 6:160576366 (GRCh38)
6:160997399 (GRCh37)
Canonical SPDI:: NC_000006.12:160576366::TACC,NC_000006.12:160576366::TATATATATATATATATGTATG,NC_000006.12:160576366::TGGG
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGGG=0./0 (ALFA)
TATATATATATATATATGTATG=0.00009/2 (GnomAD)
HGVS:: NC_000006.12:g.160576366_160576367insTACC, NC_000006.12:g.160576366_160576367insTATATATATATATATATGTATG, NC_000006.12:g.160576366_160576367insTGGG, NC_000006.11:g.160997398_160997399insTACC, NC_000006.11:g.160997398_160997399insTATATATATATATATATGTATG, NC_000006.11:g.160997398_160997399insTGGG, NG_016147.1:g.95009_95010insGGTA, NG_016147.1:g.95009_95010insCATACATATATATATATATATA, NG_016147.1:g.95009_95010insCCCA

Select item 14915133387.

rs1491513338 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TCTTCT
Chromosome:: no mapping
Canonical SPDI:

Select item 14914940558.

rs1491494055 [Homo sapiens]

Variant type:: INS
Alleles:: ->C,T,TAT,TATT,TT [Show Flanks]
Chromosome:: 6:160653958 (GRCh38)
6:161074991 (GRCh37)
Canonical SPDI:: NC_000006.12:160653958::C,NC_000006.12:160653958::T,NC_000006.12:160653958::TAT,NC_000006.12:160653958::TATT,NC_000006.12:160653958::TT
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
TT=0.00004/1 (TOMMO)
HGVS:: NC_000006.12:g.160653958_160653959insC, NC_000006.12:g.160653958_160653959insT, NC_000006.12:g.160653958_160653959insTAT, NC_000006.12:g.160653958_160653959insTATT, NC_000006.12:g.160653958_160653959insTT, NC_000006.11:g.161074990_161074991insC, NC_000006.11:g.161074990_161074991insT, NC_000006.11:g.161074990_161074991insTAT, NC_000006.11:g.161074990_161074991insTATT, NC_000006.11:g.161074990_161074991insTT, NG_016147.1:g.17417_17418insG, NG_016147.1:g.17417_17418insA, NG_016147.1:g.17417_17418insATA, NG_016147.1:g.17417_17418insAATA, NG_016147.1:g.17417_17418insAA

Select item 14914450749.

rs1491445074 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TGTGTGCGTGTGTGTGTGTGTGTG
Chromosome:: no mapping
Canonical SPDI:

Select item 149144442310.

rs1491444423 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,ACA,G [Show Flanks]
Chromosome:: 6:160654090 (GRCh38)
6:161075123 (GRCh37)
Canonical SPDI:: NC_000006.12:160654090::A,NC_000006.12:160654090::ACA,NC_000006.12:160654090::G
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACA=0./0 (ALFA)
HGVS:: NC_000006.12:g.160654090_160654091insA, NC_000006.12:g.160654090_160654091insACA, NC_000006.12:g.160654090_160654091insG, NC_000006.11:g.161075122_161075123insA, NC_000006.11:g.161075122_161075123insACA, NC_000006.11:g.161075122_161075123insG, NG_016147.1:g.17285_17286insT, NG_016147.1:g.17285_17286insTGT, NG_016147.1:g.17285_17286insC

Select item 149143753711.

rs1491437537 [Homo sapiens]

Variant type:: DEL
Alleles:: CC>- [Show Flanks]
Chromosome:: 6:160584242 (GRCh38)
6:161005274 (GRCh37)
Canonical SPDI:: NC_000006.12:160584241:CC:
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.00071/54 (GnomAD)
HGVS:: NC_000006.12:g.160584242_160584243del, NC_000006.11:g.161005274_161005275del, NG_016147.1:g.87133_87134del

Select item 149141117112.

rs1491411171 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 6:160654090 (GRCh38)
6:161075122 (GRCh37)
Canonical SPDI:: NC_000006.12:160654089:TT:
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00018/3 (TOMMO)
-=0.0002/4 (GnomAD)
HGVS:: NC_000006.12:g.160654090_160654091del, NC_000006.11:g.161075122_161075123del, NG_016147.1:g.17285_17286del

Select item 149137448213.

rs1491374482 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 6:160653958 (GRCh38)
6:161074990 (GRCh37)
Canonical SPDI:: NC_000006.12:160653957:AA:
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00025/10 (GnomAD)
HGVS:: NC_000006.12:g.160653958_160653959del, NC_000006.11:g.161074990_161074991del, NG_016147.1:g.17417_17418del

Select item 149137321514.

rs1491373215 has merged into rs10526739 [Homo sapiens]

Variant type:: DELINS
Alleles:: TGTGTGTGTG>-,TG,TGTG,TGTGTG,TGTGTGTG,TGTGTGTGTGTG,TGTGTGTGTGTGTG,TGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTG,TGTGTGTGTGTGTGTGTGTGTGTG [Show Flanks]
Chromosome:: 6:160608834 (GRCh38)
6:161029866 (GRCh37)
Canonical SPDI:: NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,NC_000006.12:160608819:TGTGTGTGTGTGTGTGTGTGTGTG:TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGTGTGTGTGTG=0./0 (ALFA)
TGTG=0.2442/1223 (1000Genomes)
HGVS:: NC_000006.12:g.160608820TG[7], NC_000006.12:g.160608820TG[8], NC_000006.12:g.160608820TG[9], NC_000006.12:g.160608820TG[10], NC_000006.12:g.160608820TG[11], NC_000006.12:g.160608820TG[13], NC_000006.12:g.160608820TG[14], NC_000006.12:g.160608820TG[15], NC_000006.12:g.160608820TG[16], NC_000006.12:g.160608820TG[17], NC_000006.12:g.160608820TG[18], NC_000006.12:g.160608820TG[19], NC_000006.11:g.161029852TG[7], NC_000006.11:g.161029852TG[8], NC_000006.11:g.161029852TG[9], NC_000006.11:g.161029852TG[10], NC_000006.11:g.161029852TG[11], NC_000006.11:g.161029852TG[13], NC_000006.11:g.161029852TG[14], NC_000006.11:g.161029852TG[15], NC_000006.11:g.161029852TG[16], NC_000006.11:g.161029852TG[17], NC_000006.11:g.161029852TG[18], NC_000006.11:g.161029852TG[19], NG_016147.1:g.62533CA[7], NG_016147.1:g.62533CA[8], NG_016147.1:g.62533CA[9], NG_016147.1:g.62533CA[10], NG_016147.1:g.62533CA[11], NG_016147.1:g.62533CA[13], NG_016147.1:g.62533CA[14], NG_016147.1:g.62533CA[15], NG_016147.1:g.62533CA[16], NG_016147.1:g.62533CA[17], NG_016147.1:g.62533CA[18], NG_016147.1:g.62533CA[19]

Select item 149136498015.

rs1491364980 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>-,TATA [Show Flanks]
Chromosome:: 6:160654026 (GRCh38)
6:161075058 (GRCh37)
Canonical SPDI:: NC_000006.12:160654020:ATATATA:ATATA,NC_000006.12:160654020:ATATATA:ATATATATA
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATA=0./0 (ALFA)
HGVS:: NC_000006.12:g.160654022TA[2], NC_000006.12:g.160654022TA[4], NC_000006.11:g.161075054TA[2], NC_000006.11:g.161075054TA[4], NG_016147.1:g.17350AT[2], NG_016147.1:g.17350AT[4]

Select item 149136283716.

rs1491362837 has merged into rs58821197 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAAAAAAAAAAAAAAAGATAACAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 6:160652026 (GRCh38)
6:161073058 (GRCh37)
Canonical SPDI:: NC_000006.12:160652016:AAAAAAAAAAAA:AAAAAAAAA,NC_000006.12:160652016:AAAAAAAAAAAA:AAAAAAAAAA,NC_000006.12:160652016:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000006.12:160652016:AAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000006.12:160652016:AAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000006.12:160652016:AAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000006.12:160652016:AAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000006.12:160652016:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAACAAAAAAAAAAAAAAAAAA
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.3924/1455 (TWINSUK)
-=0.4009/1545 (ALSPAC)
HGVS:: NC_000006.12:g.160652026_160652028del, NC_000006.12:g.160652027_160652028del, NC_000006.12:g.160652028del, NC_000006.12:g.160652028dup, NC_000006.12:g.160652027_160652028dup, NC_000006.12:g.160652026_160652028dup, NC_000006.12:g.160652025_160652028dup, NC_000006.12:g.160652017_160652028A[31]GATAACAAAAAAAAAAAAAAAAAA[1], NC_000006.11:g.161073058_161073060del, NC_000006.11:g.161073059_161073060del, NC_000006.11:g.161073060del, NC_000006.11:g.161073060dup, NC_000006.11:g.161073059_161073060dup, NC_000006.11:g.161073058_161073060dup, NC_000006.11:g.161073057_161073060dup, NC_000006.11:g.161073049_161073060A[31]GATAACAAAAAAAAAAAAAAAAAA[1], NG_016147.1:g.19357_19359del, NG_016147.1:g.19358_19359del, NG_016147.1:g.19359del, NG_016147.1:g.19359dup, NG_016147.1:g.19358_19359dup, NG_016147.1:g.19357_19359dup, NG_016147.1:g.19356_19359dup, NG_016147.1:g.19348_19359T[18]GTTATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT[1]

Select item 149129956817.

rs1491299568 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 6:160654081 (GRCh38)
6:161075113 (GRCh37)
Canonical SPDI:: NC_000006.12:160654080:TT:
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00034/13 (GnomAD)
-=0.00128/1 (Korea1K)
-=0.00204/34 (TOMMO)
HGVS:: NC_000006.12:g.160654081_160654082del, NC_000006.11:g.161075113_161075114del, NG_016147.1:g.17294_17295del

Select item 149128507018.

rs1491285070 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 6:160652017 (GRCh38)
6:161073050 (GRCh37)
Canonical SPDI:: NC_000006.12:160652017::G
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00007/2 (GnomAD)
HGVS:: NC_000006.12:g.160652017_160652018insG, NC_000006.11:g.161073049_161073050insG, NG_016147.1:g.19358_19359insC

Select item 149127719919.

rs1491277199 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 6:160654020 (GRCh38)
6:161075052 (GRCh37)
Canonical SPDI:: NC_000006.12:160654019:AA:
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00049/4 (GnomAD)
-=0.00278/35 (TOMMO)
HGVS:: NC_000006.12:g.160654020_160654021del, NC_000006.11:g.161075052_161075053del, NG_016147.1:g.17355_17356del

Select item 149127567620.

rs1491275676 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 6:160643082 (GRCh38)
6:161064114 (GRCh37)
Canonical SPDI:: NC_000006.12:160643081:CA:
Gene:: LPA (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000735/12 (ALFA)
-=0.000112/15 (GnomAD)
-=0.001667/1 (NorthernSweden)
HGVS:: NC_000006.12:g.160643082_160643083del, NC_000006.11:g.161064114_161064115del, NG_016147.1:g.28293_28294del

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