SNP Links for Gene (Select 402778) - SNP

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Select item 14915476631.

rs1491547663 has merged into rs57367417 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA [Show Flanks]
Chromosome:: 11:1732028 (GRCh38)
11:1753258 (GRCh37)
Canonical SPDI:: NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACA,NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACACA,NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACACACA,NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACACACACA,NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACACACACACA,NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACACACACACACACA,NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACACACACACACACACA,NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACACACACACACACACACA,NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACACACACACACACACACACA,NC_000011.10:1732013:CACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACA
Gene:: IFITM10 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACACACACACA=0./0 (ALFA)
CA=0.25/1252 (1000Genomes)
HGVS:: NC_000011.10:g.1732014CA[7], NC_000011.10:g.1732014CA[8], NC_000011.10:g.1732014CA[9], NC_000011.10:g.1732014CA[10], NC_000011.10:g.1732014CA[11], NC_000011.10:g.1732014CA[13], NC_000011.10:g.1732014CA[14], NC_000011.10:g.1732014CA[15], NC_000011.10:g.1732014CA[16], NC_000011.10:g.1732014CA[17], NC_000011.9:g.1753244CA[7], NC_000011.9:g.1753244CA[8], NC_000011.9:g.1753244CA[9], NC_000011.9:g.1753244CA[10], NC_000011.9:g.1753244CA[11], NC_000011.9:g.1753244CA[13], NC_000011.9:g.1753244CA[14], NC_000011.9:g.1753244CA[15], NC_000011.9:g.1753244CA[16], NC_000011.9:g.1753244CA[17], NT_187657.1:g.205760CA[7], NT_187657.1:g.205760CA[8], NT_187657.1:g.205760CA[9], NT_187657.1:g.205760CA[10], NT_187657.1:g.205760CA[11], NT_187657.1:g.205760CA[13], NT_187657.1:g.205760CA[14], NT_187657.1:g.205760CA[15], NT_187657.1:g.205760CA[16], NT_187657.1:g.205760CA[17]

Select item 14915443652.

rs1491544365 [Homo sapiens]

Variant type:: DEL
Alleles:: AC>- [Show Flanks]
Chromosome:: 11:1745953 (GRCh38)
11:1767183 (GRCh37)
Canonical SPDI:: NC_000011.10:1745952:AC:
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.1745953_1745954del, NC_000011.9:g.1767183_1767184del

Select item 14912532933.

rs1491253293 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->TGTG
Chromosome:: no mapping
Canonical SPDI:

Select item 14912027244.

rs1491202724 has merged into rs146312647 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG,GGG,GGGG,GGGGG,GGGGGG [Show Flanks]
Chromosome:: 11:1744640 (GRCh38)
11:1765870 (GRCh37)
Canonical SPDI:: NC_000011.10:1744639:GGGGGGGG:GGGGGGG,NC_000011.10:1744639:GGGGGGGG:GGGGGGGGG,NC_000011.10:1744639:GGGGGGGG:GGGGGGGGGG,NC_000011.10:1744639:GGGGGGGG:GGGGGGGGGGG,NC_000011.10:1744639:GGGGGGGG:GGGGGGGGGGGG,NC_000011.10:1744639:GGGGGGGG:GGGGGGGGGGGGG
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGGGGG=0./0 (ALFA)
-=0.000546/1 (Korea1K)
-=0.060092/287 (1000Genomes)
-=0.122574/32444 (TOPMED)
-=0.157971/654 (Estonian)
HGVS:: NC_000011.10:g.1744647del, NC_000011.10:g.1744647dup, NC_000011.10:g.1744646_1744647dup, NC_000011.10:g.1744645_1744647dup, NC_000011.10:g.1744644_1744647dup, NC_000011.10:g.1744643_1744647dup, NC_000011.9:g.1765877del, NC_000011.9:g.1765877dup, NC_000011.9:g.1765876_1765877dup, NC_000011.9:g.1765875_1765877dup, NC_000011.9:g.1765874_1765877dup, NC_000011.9:g.1765873_1765877dup

Select item 14911830485.

rs1491183048 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AC [Show Flanks]
Chromosome:: 11:1745923 (GRCh38)
11:1767154 (GRCh37)
Canonical SPDI:: NC_000011.10:1745923:C:CAC
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CAC=0./0 (ALFA)
HGVS:: NC_000011.10:g.1745924_1745925insAC, NC_000011.9:g.1767154_1767155insAC

Select item 14910429436.

rs1491042943 has merged into rs3047256 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACA>-,CA,CACACA [Show Flanks]
Chromosome:: 11:1746273 (GRCh38)
11:1767503 (GRCh37)
Canonical SPDI:: NC_000011.10:1746269:ACACACA:ACA,NC_000011.10:1746269:ACACACA:ACACA,NC_000011.10:1746269:ACACACA:ACACACACA
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACA=0./0 (ALFA)
AC=0.207547/44 (Vietnamese)
AC=0.266667/160 (NorthernSweden)
AC=0.289847/531 (Korea1K)
AC=0.322816/1197 (TWINSUK)
AC=0.330661/330 (GoNL)
AC=0.332641/1282 (ALSPAC)
AC=0.34323/9699 (TOMMO)
AC=0.400016/55899 (GnomAD)
AC=0.426452/2136 (1000Genomes)
HGVS:: NC_000011.10:g.1746271CA[1], NC_000011.10:g.1746271CA[2], NC_000011.10:g.1746271CA[4], NC_000011.9:g.1767501CA[1], NC_000011.9:g.1767501CA[2], NC_000011.9:g.1767501CA[4]

Select item 14907592367.

rs1490759236 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:1750026 (GRCh38)
11:1771256 (GRCh37)
Canonical SPDI:: NC_000011.10:1750025:T:C
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.1750026T>C, NC_000011.9:g.1771256T>C

Select item 14907539478.

rs1490753947 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1749900 (GRCh38)
11:1771130 (GRCh37)
Canonical SPDI:: NC_000011.10:1749899:C:T
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000094/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.1749900C>T, NC_000011.9:g.1771130C>T

Select item 14907450329.

rs1490745032 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1744392 (GRCh38)
11:1765622 (GRCh37)
Canonical SPDI:: NC_000011.10:1744391:C:T
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.1744392C>T, NC_000011.9:g.1765622C>T

Select item 149059631810.

rs1490596318 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:1749287 (GRCh38)
11:1770517 (GRCh37)
Canonical SPDI:: NC_000011.10:1749286:G:A
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.1749287G>A, NC_000011.9:g.1770517G>A

Select item 149038145211.

rs1490381452 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:1736651 (GRCh38)
11:1757881 (GRCh37)
Canonical SPDI:: NC_000011.10:1736650:G:A
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.1736651G>A, NC_000011.9:g.1757881G>A, NT_187657.1:g.210397G>A

Select item 148991835812.

rs1489918358 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:1749419 (GRCh38)
11:1770649 (GRCh37)
Canonical SPDI:: NC_000011.10:1749418:C:G,NC_000011.10:1749418:C:T
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.1749419C>G, NC_000011.10:g.1749419C>T, NC_000011.9:g.1770649C>G, NC_000011.9:g.1770649C>T

Select item 148973387913.

rs1489733879 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGG>- [Show Flanks]
Chromosome:: 11:1743354 (GRCh38)
11:1764584 (GRCh37)
Canonical SPDI:: NC_000011.10:1743352:GGAGG:G
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000011.10:g.1743354_1743357del, NC_000011.9:g.1764584_1764587del

Select item 148961944014.

rs1489619440 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:1744498 (GRCh38)
11:1765728 (GRCh37)
Canonical SPDI:: NC_000011.10:1744497:G:A
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.1744498G>A, NC_000011.9:g.1765728G>A

Select item 148948025315.

rs1489480253 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1746059 (GRCh38)
11:1767289 (GRCh37)
Canonical SPDI:: NC_000011.10:1746058:C:T
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.1746059C>T, NC_000011.9:g.1767289C>T

Select item 148945000316.

rs1489450003 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:1747614 (GRCh38)
11:1768844 (GRCh37)
Canonical SPDI:: NC_000011.10:1747613:G:A
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000011.10:g.1747614G>A, NC_000011.9:g.1768844G>A

Select item 148939814917.

rs1489398149 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1751886 (GRCh38)
11:1773116 (GRCh37)
Canonical SPDI:: NC_000011.10:1751885:C:T
Gene:: IFITM10 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.1751886C>T, NC_000011.9:g.1773116C>T, NG_008655.1:g.17107G>A

Select item 148935084818.

rs1489350848 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:1748393 (GRCh38)
11:1769623 (GRCh37)
Canonical SPDI:: NC_000011.10:1748392:C:G
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.1748393C>G, NC_000011.9:g.1769623C>G

Select item 148930930719.

rs1489309307 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:1743948 (GRCh38)
11:1765178 (GRCh37)
Canonical SPDI:: NC_000011.10:1743947:T:C
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.1743948T>C, NC_000011.9:g.1765178T>C, NG_056139.1:g.448T>C

Select item 148921893920.

rs1489218939 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:1743254 (GRCh38)
11:1764484 (GRCh37)
Canonical SPDI:: NC_000011.10:1743253:G:A
Gene:: IFITM10 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000049/13 (TOPMED)
HGVS:: NC_000011.10:g.1743254G>A, NC_000011.9:g.1764484G>A

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