SNP Links for Gene (Select 406903) - SNP

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Select item 14888330431.

rs1488833043 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:176148709 (GRCh38)
2:177013437 (GRCh37)
Canonical SPDI:: NC_000002.12:176148708:G:T
Gene:: MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.176148709G>T, NC_000002.11:g.177013437G>T, NG_012080.1:g.2325G>T

Select item 14875409632.

rs1487540963 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:176150431 (GRCh38)
2:177015159 (GRCh37)
Canonical SPDI:: NC_000002.12:176150430:A:G
Gene:: HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000002.12:g.176150431A>G, NC_000002.11:g.177015159A>G, NG_012080.1:g.4047A>G

Select item 14867835683.

rs1486783568 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:176150437 (GRCh38)
2:177015165 (GRCh37)
Canonical SPDI:: NC_000002.12:176150436:C:T
Gene:: HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000002.12:g.176150437C>T, NC_000002.11:g.177015165C>T, NG_012080.1:g.4053C>T

Select item 14863174304.

rs1486317430 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:176149137 (GRCh38)
2:177013865 (GRCh37)
Canonical SPDI:: NC_000002.12:176149136:A:C
Gene:: MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000106/2 (TOMMO)
C=0.000546/1 (Korea1K)
C=0.001027/3 (KOREAN)
HGVS:: NC_000002.12:g.176149137A>C, NC_000002.11:g.177013865A>C, NG_012080.1:g.2753A>C

Select item 14861787125.

rs1486178712 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:176149801 (GRCh38)
2:177014529 (GRCh37)
Canonical SPDI:: NC_000002.12:176149800:G:A
Gene:: HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.176149801G>A, NC_000002.11:g.177014529G>A, NG_012080.1:g.3417G>A

Select item 14850397306.

rs1485039730 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTCTTTCTT>- [Show Flanks]
Chromosome:: 2:176150088 (GRCh38)
2:177014816 (GRCh37)
Canonical SPDI:: NC_000002.12:176150077:TTTCTTTCTTTTTTTCTTTCTT:TTTCTTTCTT
Gene:: HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TTTCTTTCTT=0./0 (ALFA)
-=0.000045/12 (TOPMED)
HGVS:: NC_000002.12:g.176150088_176150099del, NC_000002.11:g.177014816_177014827del, NG_012080.1:g.3704_3715del

Select item 14846579167.

rs1484657916 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:176149577 (GRCh38)
2:177014305 (GRCh37)
Canonical SPDI:: NC_000002.12:176149576:A:C
Gene:: HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.176149577A>C, NC_000002.11:g.177014305A>C, NG_012080.1:g.3193A>C

Select item 14845015408.

rs1484501540 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:176148941 (GRCh38)
2:177013669 (GRCh37)
Canonical SPDI:: NC_000002.12:176148940:A:C
Gene:: MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.176148941A>C, NC_000002.11:g.177013669A>C, NG_012080.1:g.2557A>C

Select item 14820208209.

rs1482020820 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:176148409 (GRCh38)
2:177013137 (GRCh37)
Canonical SPDI:: NC_000002.12:176148408:G:A,NC_000002.12:176148408:G:C
Gene:: MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.176148409G>A, NC_000002.12:g.176148409G>C, NC_000002.11:g.177013137G>A, NC_000002.11:g.177013137G>C, NG_012080.1:g.2025G>A, NG_012080.1:g.2025G>C

Select item 148129935210.

rs1481299352 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:176148380 (GRCh38)
2:177013108 (GRCh37)
Canonical SPDI:: NC_000002.12:176148379:G:A
Gene:: MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000002.12:g.176148380G>A, NC_000002.11:g.177013108G>A, NG_012080.1:g.1996G>A

Select item 148058133711.

rs1480581337 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 2:176149635 (GRCh38)
2:177014363 (GRCh37)
Canonical SPDI:: NC_000002.12:176149634:T:C,NC_000002.12:176149634:T:G
Gene:: HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.176149635T>C, NC_000002.12:g.176149635T>G, NC_000002.11:g.177014363T>C, NC_000002.11:g.177014363T>G, NG_012080.1:g.3251T>C, NG_012080.1:g.3251T>G

Select item 147991783312.

rs1479917833 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:176149852 (GRCh38)
2:177014580 (GRCh37)
Canonical SPDI:: NC_000002.12:176149851:G:T
Gene:: HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.176149852G>T, NC_000002.11:g.177014580G>T, NG_012080.1:g.3468G>T

Select item 147872297713.

rs1478722977 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:176148694 (GRCh38)
2:177013422 (GRCh37)
Canonical SPDI:: NC_000002.12:176148693:T:G
Gene:: MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.176148694T>G, NC_000002.11:g.177013422T>G, NG_012080.1:g.2310T>G

Select item 147844409714.

rs1478444097 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:176150222 (GRCh38)
2:177014950 (GRCh37)
Canonical SPDI:: NC_000002.12:176150221:G:A,NC_000002.12:176150221:G:T
Gene:: HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.176150222G>A, NC_000002.12:g.176150222G>T, NC_000002.11:g.177014950G>A, NC_000002.11:g.177014950G>T, NG_012080.1:g.3838G>A, NG_012080.1:g.3838G>T

Select item 147500808415.

rs1475008084 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 2:176148470 (GRCh38)
2:177013198 (GRCh37)
Canonical SPDI:: NC_000002.12:176148469:G:C,NC_000002.12:176148469:G:T
Gene:: MIR10B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.176148470G>C, NC_000002.12:g.176148470G>T, NC_000002.11:g.177013198G>C, NC_000002.11:g.177013198G>T, NG_012080.1:g.2086G>C, NG_012080.1:g.2086G>T

Select item 147419475016.

rs1474194750 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:176150684 (GRCh38)
2:177015412 (GRCh37)
Canonical SPDI:: NC_000002.12:176150683:A:C
Gene:: HOXD3 (Varview), HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000038/10 (TOPMED)
HGVS:: NC_000002.12:g.176150684A>C, NC_000002.11:g.177015412A>C, NG_012080.1:g.4300A>C

Select item 147219663717.

rs1472196637 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGAGAGAGAAAGAGAGA>- [Show Flanks]
Chromosome:: 2:176150632 (GRCh38)
2:177015360 (GRCh37)
Canonical SPDI:: NC_000002.12:176150616:AGAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGA:AGAGAGAAAGAGAGA
Gene:: HOXD3 (Varview), HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGAGAAAGAGAGA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.176150632_176150649del, NC_000002.11:g.177015360_177015377del, NG_012080.1:g.4248_4265del

Select item 147037160818.

rs1470371608 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:176150480 (GRCh38)
2:177015208 (GRCh37)
Canonical SPDI:: NC_000002.12:176150479:C:G
Gene:: HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.176150480C>G, NC_000002.11:g.177015208C>G, NG_012080.1:g.4096C>G

Select item 146918603919.

rs1469186039 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:176150763 (GRCh38)
2:177015491 (GRCh37)
Canonical SPDI:: NC_000002.12:176150762:G:A
Gene:: HOXD3 (Varview), HOXD4 (Varview), MIR10B (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.176150763G>A, NC_000002.11:g.177015491G>A, NG_012080.1:g.4379G>A

Select item 146817476020.

rs1468174760 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:176148843 (GRCh38)
2:177013571 (GRCh37)
Canonical SPDI:: NC_000002.12:176148842:G:A
Gene:: MIR10B (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.176148843G>A, NC_000002.11:g.177013571G>A, NG_012080.1:g.2459G>A

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