SNP Links for Gene (Select 406911) - SNP

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Select item 14915174751.

rs1491517475 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG,TG [Show Flanks]
Chromosome:: 11:122100661 (GRCh38)
11:121971370 (GRCh37)
Canonical SPDI:: NC_000011.10:122100661:G:GAG,NC_000011.10:122100661:G:GTG
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GTG=0./0 (ALFA)
GT=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.122100662_122100663insAG, NC_000011.10:g.122100662_122100663insTG, NC_000011.9:g.121971370_121971371insAG, NC_000011.9:g.121971370_121971371insTG, NR_137176.1:n.185_186insTC, NR_137176.1:n.185_186insAC, NR_137177.1:n.185_186insTC, NR_137177.1:n.185_186insAC, NR_137178.1:n.185_186insTC, NR_137178.1:n.185_186insAC

Select item 14915070322.

rs1491507032 has merged into rs376231044 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGGGGG>-,G,GG,GGG,GGGG,GGGGG,GGGGGGG,GGGGGGGG,GGGGGGGGG,GGGGGGGGGG,GGGGGGGGGGG,GGGGGGGGGGGGGGG [Show Flanks]
Chromosome:: 11:122100669 (GRCh38)
11:121971377 (GRCh37)
Canonical SPDI:: NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGG,NC_000011.10:122100660:GGGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGGGGGG
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGG=0./0 (ALFA)
HGVS:: NC_000011.10:g.122100669_122100674del, NC_000011.10:g.122100670_122100674del, NC_000011.10:g.122100671_122100674del, NC_000011.10:g.122100672_122100674del, NC_000011.10:g.122100673_122100674del, NC_000011.10:g.122100674del, NC_000011.10:g.122100674dup, NC_000011.10:g.122100673_122100674dup, NC_000011.10:g.122100672_122100674dup, NC_000011.10:g.122100671_122100674dup, NC_000011.10:g.122100670_122100674dup, NC_000011.10:g.122100666_122100674dup, NC_000011.9:g.121971377_121971382del, NC_000011.9:g.121971378_121971382del, NC_000011.9:g.121971379_121971382del, NC_000011.9:g.121971380_121971382del, NC_000011.9:g.121971381_121971382del, NC_000011.9:g.121971382del, NC_000011.9:g.121971382dup, NC_000011.9:g.121971381_121971382dup, NC_000011.9:g.121971380_121971382dup, NC_000011.9:g.121971379_121971382dup, NC_000011.9:g.121971378_121971382dup, NC_000011.9:g.121971374_121971382dup, NR_137176.1:n.181_186del, NR_137176.1:n.182_186del, NR_137176.1:n.183_186del, NR_137176.1:n.184_186del, NR_137176.1:n.185_186del, NR_137176.1:n.186del, NR_137176.1:n.186dup, NR_137176.1:n.185_186dup, NR_137176.1:n.184_186dup, NR_137176.1:n.183_186dup, NR_137176.1:n.182_186dup, NR_137176.1:n.178_186dup, NR_137177.1:n.181_186del, NR_137177.1:n.182_186del, NR_137177.1:n.183_186del, NR_137177.1:n.184_186del, NR_137177.1:n.185_186del, NR_137177.1:n.186del, NR_137177.1:n.186dup, NR_137177.1:n.185_186dup, NR_137177.1:n.184_186dup, NR_137177.1:n.183_186dup, NR_137177.1:n.182_186dup, NR_137177.1:n.178_186dup, NR_137178.1:n.181_186del, NR_137178.1:n.182_186del, NR_137178.1:n.183_186del, NR_137178.1:n.184_186del, NR_137178.1:n.185_186del, NR_137178.1:n.186del, NR_137178.1:n.186dup, NR_137178.1:n.185_186dup, NR_137178.1:n.184_186dup, NR_137178.1:n.183_186dup, NR_137178.1:n.182_186dup, NR_137178.1:n.178_186dup

Select item 14912071253.

rs1491207125 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 11:122100659 (GRCh38)
11:121971368 (GRCh37)
Canonical SPDI:: NC_000011.10:122100659:C:CC
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.00022/3 (TOMMO)
C=0.00026/7 (GnomAD)
HGVS:: NC_000011.10:g.122100660dup, NC_000011.9:g.121971368dup, NR_137176.1:n.187dup, NR_137177.1:n.187dup, NR_137178.1:n.187dup

Select item 14885048734.

rs1488504873 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:122101097 (GRCh38)
11:121971805 (GRCh37)
Canonical SPDI:: NC_000011.10:122101096:G:A
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.122101097G>A, NC_000011.9:g.121971805G>A

Select item 14871432225.

rs1487143222 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:122100392 (GRCh38)
11:121971100 (GRCh37)
Canonical SPDI:: NC_000011.10:122100391:G:T
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.122100392G>T, NC_000011.9:g.121971100G>T, NR_137190.1:n.798C>A, NR_137191.1:n.798C>A, NR_137176.1:n.455C>A, NR_137177.1:n.455C>A, NR_137178.1:n.455C>A

Select item 14870969976.

rs1487096997 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:122100668 (GRCh38)
11:121971377 (GRCh37)
Canonical SPDI:: NC_000011.10:122100668::T
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.00031/5 (ALFA)
HGVS:: NC_000011.10:g.122100668_122100669insT, NC_000011.9:g.121971376_121971377insT, NR_137176.1:n.178_179insA, NR_137177.1:n.178_179insA, NR_137178.1:n.178_179insA

Select item 14866757817.

rs1486675781 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:122100698 (GRCh38)
11:121971407 (GRCh37)
Canonical SPDI:: NC_000011.10:122100698:TTTTT:TTTTTT
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTTTT=0./0 (ALFA)
T=0.000047/6 (GnomAD)
HGVS:: NC_000011.10:g.122100703dup, NC_000011.9:g.121971411dup, NR_137176.1:n.148dup, NR_137177.1:n.148dup, NR_137178.1:n.148dup

Select item 14858577388.

rs1485857738 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 11:122101743 (GRCh38)
11:121972451 (GRCh37)
Canonical SPDI:: NC_000011.10:122101734:GAGAGAGAGA:GAGAGAGA
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAGAGAGA=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.122101735GA[4], NC_000011.9:g.121972443GA[4], NR_137190.1:n.486TC[4], NR_137191.1:n.486TC[4], NR_137189.1:n.486TC[4], NR_137175.1:n.486TC[4]

Select item 14857880049.

rs1485788004 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:122101684 (GRCh38)
11:121972392 (GRCh37)
Canonical SPDI:: NC_000011.10:122101683:A:G,NC_000011.10:122101683:A:T
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000057/15 (TOPMED)
T=0.000057/8 (GnomAD)
HGVS:: NC_000011.10:g.122101684A>G, NC_000011.10:g.122101684A>T, NC_000011.9:g.121972392A>G, NC_000011.9:g.121972392A>T, NR_137190.1:n.546T>C, NR_137190.1:n.546T>A, NR_137191.1:n.546T>C, NR_137191.1:n.546T>A, NR_137189.1:n.546T>C, NR_137189.1:n.546T>A, NR_137175.1:n.546T>C, NR_137175.1:n.546T>A

Select item 148549348610.

rs1485493486 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG [Show Flanks]
Chromosome:: 11:122100663 (GRCh38)
11:121971372 (GRCh37)
Canonical SPDI:: NC_000011.10:122100663:G:GAG
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAG=0./0 (ALFA)
HGVS:: NC_000011.10:g.122100664_122100665insAG, NC_000011.9:g.121971372_121971373insAG, NR_137176.1:n.183_184insTC, NR_137177.1:n.183_184insTC, NR_137178.1:n.183_184insTC

Select item 148500836611.

rs1485008366 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:122100765 (GRCh38)
11:121971473 (GRCh37)
Canonical SPDI:: NC_000011.10:122100764:T:A
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.122100765T>A, NC_000011.9:g.121971473T>A, NR_137176.1:n.82A>T, NR_137177.1:n.82A>T, NR_137178.1:n.82A>T

Select item 148467641712.

rs1484676417 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 11:122099305 (GRCh38)
11:121970013 (GRCh37)
Canonical SPDI:: NC_000011.10:122099304:T:A,NC_000011.10:122099304:T:C
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.122099305T>A, NC_000011.10:g.122099305T>C, NC_000011.9:g.121970013T>A, NC_000011.9:g.121970013T>C

Select item 148386053813.

rs1483860538 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:122101479 (GRCh38)
11:121972187 (GRCh37)
Canonical SPDI:: NC_000011.10:122101478:T:C
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.122101479T>C, NC_000011.9:g.121972187T>C, NR_137190.1:n.751A>G, NR_137191.1:n.751A>G, NR_137189.1:n.751A>G, NR_137175.1:n.751A>G

Select item 148276866514.

rs1482768665 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:122100982 (GRCh38)
11:121971690 (GRCh37)
Canonical SPDI:: NC_000011.10:122100981:T:C
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.122100982T>C, NC_000011.9:g.121971690T>C

Select item 148127760215.

rs1481277602 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:122100460 (GRCh38)
11:121971168 (GRCh37)
Canonical SPDI:: NC_000011.10:122100459:C:T
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/1 (GnomAD)
HGVS:: NC_000011.10:g.122100460C>T, NC_000011.9:g.121971168C>T, NR_137176.1:n.387G>A, NR_137177.1:n.387G>A, NR_137178.1:n.387G>A

Select item 148126227316.

rs1481262273 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:122100658 (GRCh38)
11:121971366 (GRCh37)
Canonical SPDI:: NC_000011.10:122100657:G:A
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00004/1 (TOMMO)
HGVS:: NC_000011.10:g.122100658G>A, NC_000011.9:g.121971366G>A, NR_137176.1:n.189C>T, NR_137177.1:n.189C>T, NR_137178.1:n.189C>T

Select item 147989294517.

rs1479892945 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:122099534 (GRCh38)
11:121970242 (GRCh37)
Canonical SPDI:: NC_000011.10:122099533:C:G,NC_000011.10:122099533:C:T
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.122099534C>G, NC_000011.10:g.122099534C>T, NC_000011.9:g.121970242C>G, NC_000011.9:g.121970242C>T

Select item 147897419018.

rs1478974190 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:122101514 (GRCh38)
11:121972222 (GRCh37)
Canonical SPDI:: NC_000011.10:122101513:C:G,NC_000011.10:122101513:C:T
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.122101514C>G, NC_000011.10:g.122101514C>T, NC_000011.9:g.121972222C>G, NC_000011.9:g.121972222C>T, NR_137190.1:n.716G>C, NR_137190.1:n.716G>A, NR_137191.1:n.716G>C, NR_137191.1:n.716G>A, NR_137189.1:n.716G>C, NR_137189.1:n.716G>A, NR_137175.1:n.716G>C, NR_137175.1:n.716G>A

Select item 147858048819.

rs1478580488 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:122100766 (GRCh38)
11:121971474 (GRCh37)
Canonical SPDI:: NC_000011.10:122100765:C:G,NC_000011.10:122100765:C:T
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.122100766C>G, NC_000011.10:g.122100766C>T, NC_000011.9:g.121971474C>G, NC_000011.9:g.121971474C>T, NR_137176.1:n.81G>C, NR_137176.1:n.81G>A, NR_137177.1:n.81G>C, NR_137177.1:n.81G>A, NR_137178.1:n.81G>C, NR_137178.1:n.81G>A

Select item 147799452020.

rs1477994520 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:122101195 (GRCh38)
11:121971903 (GRCh37)
Canonical SPDI:: NC_000011.10:122101194:A:G
Gene:: MIR100HG (Varview), MIR125B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.122101195A>G, NC_000011.9:g.121971903A>G

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