SNP Links for Gene (Select 407001) - SNP

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Select item 14893032321.

rs1489303232 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 5:168767702 (GRCh38)
5:168194707 (GRCh37)
Canonical SPDI:: NC_000005.10:168767701:A:C,NC_000005.10:168767701:A:G
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000005.10:g.168767702A>C, NC_000005.10:g.168767702A>G, NC_000005.9:g.168194707A>C, NC_000005.9:g.168194707A>G, NG_033081.1:g.538427T>G, NG_033081.1:g.538427T>C

Select item 14890870042.

rs1489087004 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:168768004 (GRCh38)
5:168195009 (GRCh37)
Canonical SPDI:: NC_000005.10:168768003:G:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000005.10:g.168768004G>A, NC_000005.9:g.168195009G>A, NG_033081.1:g.538125C>T

Select item 14874361993.

rs1487436199 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:168768271 (GRCh38)
5:168195276 (GRCh37)
Canonical SPDI:: NC_000005.10:168768270:A:G
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000005.10:g.168768271A>G, NC_000005.9:g.168195276A>G, NG_033081.1:g.537858T>C

Select item 14860394504.

rs1486039450 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:168768460 (GRCh38)
5:168195465 (GRCh37)
Canonical SPDI:: NC_000005.10:168768459:G:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.168768460G>A, NC_000005.9:g.168195465G>A, NG_033081.1:g.537669C>T

Select item 14857462985.

rs1485746298 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:168767925 (GRCh38)
5:168194930 (GRCh37)
Canonical SPDI:: NC_000005.10:168767924:G:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.168767925G>A, NC_000005.9:g.168194930G>A, NG_033081.1:g.538204C>T

Select item 14847952876.

rs1484795287 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:168768360 (GRCh38)
5:168195365 (GRCh37)
Canonical SPDI:: NC_000005.10:168768359:A:G
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.168768360A>G, NC_000005.9:g.168195365A>G, NG_033081.1:g.537769T>C

Select item 14827933327.

rs1482793332 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:168769480 (GRCh38)
5:168196485 (GRCh37)
Canonical SPDI:: NC_000005.10:168769479:T:C
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.168769480T>C, NC_000005.9:g.168196485T>C, NG_033081.1:g.536649A>G

Select item 14800631348.

rs1480063134 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:168768719 (GRCh38)
5:168195724 (GRCh37)
Canonical SPDI:: NC_000005.10:168768718:C:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.168768719C>A, NC_000005.9:g.168195724C>A, NG_033081.1:g.537410G>T

Select item 14799918479.

rs1479991847 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:168767808 (GRCh38)
5:168194813 (GRCh37)
Canonical SPDI:: NC_000005.10:168767807:C:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.168767808C>A, NC_000005.9:g.168194813C>A, NG_033081.1:g.538321G>T

Select item 147694049410.

rs1476940494 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:168768223 (GRCh38)
5:168195228 (GRCh37)
Canonical SPDI:: NC_000005.10:168768222:C:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
HGVS:: NC_000005.10:g.168768223C>A, NC_000005.9:g.168195228C>A, NG_033081.1:g.537906G>T, NR_029632.1:n.33G>T

Select item 147496774911.

rs1474967749 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:168768921 (GRCh38)
5:168195926 (GRCh37)
Canonical SPDI:: NC_000005.10:168768920:C:T
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.168768921C>T, NC_000005.9:g.168195926C>T, NG_033081.1:g.537208G>A

Select item 147327301312.

rs1473273013 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:168768691 (GRCh38)
5:168195696 (GRCh37)
Canonical SPDI:: NC_000005.10:168768690:C:T
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.168768691C>T, NC_000005.9:g.168195696C>T, NG_033081.1:g.537438G>A

Select item 147077762813.

rs1470777628 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:168768291 (GRCh38)
5:168195296 (GRCh37)
Canonical SPDI:: NC_000005.10:168768290:C:G
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000006/1 (GnomAD_exomes)
G=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.168768291C>G, NC_000005.9:g.168195296C>G, NG_033081.1:g.537838G>C

Select item 146969966814.

rs1469699668 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 5:168768564 (GRCh38)
5:168195569 (GRCh37)
Canonical SPDI:: NC_000005.10:168768563:T:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000005.10:g.168768564T>A, NC_000005.9:g.168195569T>A, NG_033081.1:g.537565A>T

Select item 146939882715.

rs1469398827 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 5:168769608 (GRCh38)
5:168196613 (GRCh37)
Canonical SPDI:: NC_000005.10:168769607:T:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.168769608T>A, NC_000005.9:g.168196613T>A, NG_033081.1:g.536521A>T

Select item 146754765716.

rs1467547657 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:168768340 (GRCh38)
5:168195345 (GRCh37)
Canonical SPDI:: NC_000005.10:168768339:C:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.168768340C>A, NC_000005.9:g.168195345C>A, NG_033081.1:g.537789G>T

Select item 146659366017.

rs1466593660 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCC>-,CC [Show Flanks]
Chromosome:: 5:168768663 (GRCh38)
5:168195668 (GRCh37)
Canonical SPDI:: NC_000005.10:168768659:CCCCCC:CCC,NC_000005.10:168768659:CCCCCC:CCCCC
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCC=0.00007/1 (ALFA)
HGVS:: NC_000005.10:g.168768663_168768665del, NC_000005.10:g.168768665del, NC_000005.9:g.168195668_168195670del, NC_000005.9:g.168195670del, NG_033081.1:g.537467_537469del, NG_033081.1:g.537469del

Select item 146525379618.

rs1465253796 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:168769490 (GRCh38)
5:168196495 (GRCh37)
Canonical SPDI:: NC_000005.10:168769489:G:A
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.168769490G>A, NC_000005.9:g.168196495G>A, NG_033081.1:g.536639C>T

Select item 146444926119.

rs1464449261 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 5:168769928 (GRCh38)
5:168196933 (GRCh37)
Canonical SPDI:: NC_000005.10:168769927:CC:C
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.168769929del, NC_000005.9:g.168196934del, NG_033081.1:g.536201del

Select item 146440616020.

rs1464406160 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:168768816 (GRCh38)
5:168195821 (GRCh37)
Canonical SPDI:: NC_000005.10:168768815:C:T
Gene:: SLIT3 (Varview), MIR218-2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.168768816C>T, NC_000005.9:g.168195821C>T, NG_033081.1:g.537313G>A

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