SNP Links for Gene (Select 440044) - SNP

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Select item 14915798481.

rs1491579848 has merged into rs1477936702 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGG>-,GG,GGGG,GGGGG,GGGGGG [Show Flanks]
Chromosome:: 11:65239583 (GRCh38)
11:65007054 (GRCh37)
Canonical SPDI:: NC_000011.10:65239577:GGGGGGGG:GGGGG,NC_000011.10:65239577:GGGGGGGG:GGGGGGG,NC_000011.10:65239577:GGGGGGGG:GGGGGGGGG,NC_000011.10:65239577:GGGGGGGG:GGGGGGGGGG,NC_000011.10:65239577:GGGGGGGG:GGGGGGGGGGG
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGG=0./0 (ALFA)
G=0.00024/2 (TOMMO)
HGVS:: NC_000011.10:g.65239583_65239585del, NC_000011.10:g.65239585del, NC_000011.10:g.65239585dup, NC_000011.10:g.65239584_65239585dup, NC_000011.10:g.65239583_65239585dup, NC_000011.9:g.65007054_65007056del, NC_000011.9:g.65007056del, NC_000011.9:g.65007056dup, NC_000011.9:g.65007055_65007056dup, NC_000011.9:g.65007054_65007056dup

Select item 14915670322.

rs1491567032 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TCTT,TCTTTCTT [Show Flanks]
Chromosome:: 11:65230096 (GRCh38)
11:64997568 (GRCh37)
Canonical SPDI:: NC_000011.10:65230096:CTT:CTTTCTT,NC_000011.10:65230096:CTT:CTTTCTTTCTT
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTTTCTTTCTT=0./0 (ALFA)
CTTTCTTT=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.65230099_65230100insTCTT, NC_000011.10:g.65230099_65230100insTCTTTCTT, NC_000011.9:g.64997570_64997571insTCTT, NC_000011.9:g.64997570_64997571insTCTTTCTT

Select item 14915068283.

rs1491506828 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TATATATAT [Show Flanks]
Chromosome:: 11:65234486 (GRCh38)
11:65001958 (GRCh37)
Canonical SPDI:: NC_000011.10:65234486:TATATATAT:TATATATATTATATATAT
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TATATATATTATATATAT=0./0 (ALFA)
TATATATAT=0.00016/1 (GnomAD)
HGVS:: NC_000011.10:g.65234487_65234495dup, NC_000011.9:g.65001958_65001966dup

Select item 14914136584.

rs1491413658 [Homo sapiens]

Variant type:: DEL
Alleles:: CG>- [Show Flanks]
Chromosome:: 11:65239577 (GRCh38)
11:65007048 (GRCh37)
Canonical SPDI:: NC_000011.10:65239576:CG:
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00025/3 (ALFA)
-=0.00006/3 (GnomAD)
-=0.00035/8 (TOMMO)
HGVS:: NC_000011.10:g.65239577_65239578del, NC_000011.9:g.65007048_65007049del

Select item 14913870375.

rs1491387037 has merged into rs869162382 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAA>-,AA,AAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 11:65224375 (GRCh38)
11:64991846 (GRCh37)
Canonical SPDI:: NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:65224365:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000011.10:g.65224375_65224388del, NC_000011.10:g.65224377_65224388del, NC_000011.10:g.65224380_65224388del, NC_000011.10:g.65224383_65224388del, NC_000011.10:g.65224384_65224388del, NC_000011.10:g.65224385_65224388del, NC_000011.10:g.65224386_65224388del, NC_000011.10:g.65224387_65224388del, NC_000011.10:g.65224388del, NC_000011.10:g.65224388dup, NC_000011.10:g.65224387_65224388dup, NC_000011.10:g.65224386_65224388dup, NC_000011.10:g.65224388_65224389insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000011.9:g.64991846_64991859del, NC_000011.9:g.64991848_64991859del, NC_000011.9:g.64991851_64991859del, NC_000011.9:g.64991854_64991859del, NC_000011.9:g.64991855_64991859del, NC_000011.9:g.64991856_64991859del, NC_000011.9:g.64991857_64991859del, NC_000011.9:g.64991858_64991859del, NC_000011.9:g.64991859del, NC_000011.9:g.64991859dup, NC_000011.9:g.64991858_64991859dup, NC_000011.9:g.64991857_64991859dup, NC_000011.9:g.64991859_64991860insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14913440846.

rs1491344084 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 11:65224365 (GRCh38)
11:64991836 (GRCh37)
Canonical SPDI:: NC_000011.10:65224364:CA:
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00152/18 (ALFA)
-=0.00093/23 (GnomAD)
-=0.00233/63 (TOMMO)
HGVS:: NC_000011.10:g.65224365_65224366del, NC_000011.9:g.64991836_64991837del

Select item 14912822727.

rs1491282272 [Homo sapiens]

Variant type:: DEL
Alleles:: CC>- [Show Flanks]
Chromosome:: 11:65230096 (GRCh38)
11:64997567 (GRCh37)
Canonical SPDI:: NC_000011.10:65230095:CC:
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.015898/71 (ALFA)
-=0.000153/3 (TOMMO)
-=0.000546/1 (Korea1K)
-=0.017718/2328 (GnomAD)
HGVS:: NC_000011.10:g.65230096_65230097del, NC_000011.9:g.64997567_64997568del

Select item 14910587648.

rs1491058764 has merged into rs67392513 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACACAC>-,AC,ACAC,ACACACAC,ACACACACAC,ACACACACACAC [Show Flanks]
Chromosome:: 11:65226924 (GRCh38)
11:64994408 (GRCh37)
Canonical SPDI:: NC_000011.10:65226909:ACACACACACACACACACAC:ACACACACACACAC,NC_000011.10:65226909:ACACACACACACACACACAC:ACACACACACACACAC,NC_000011.10:65226909:ACACACACACACACACACAC:ACACACACACACACACAC,NC_000011.10:65226909:ACACACACACACACACACAC:ACACACACACACACACACACAC,NC_000011.10:65226909:ACACACACACACACACACAC:ACACACACACACACACACACACAC,NC_000011.10:65226909:ACACACACACACACACACAC:ACACACACACACACACACACACACAC
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACAC=0./0 (ALFA)
ACAC=0.0018/9 (1000Genomes)
AC=0.065/39 (NorthernSweden)
HGVS:: NC_000011.10:g.65226910AC[7], NC_000011.10:g.65226910AC[8], NC_000011.10:g.65226910AC[9], NC_000011.10:g.65226910AC[11], NC_000011.10:g.65226910AC[12], NC_000011.10:g.65226910AC[13], NC_000011.9:g.64994394T>C, NC_000011.9:g.64994394_64994399del, NC_000011.9:g.64994394_64994397del, NC_000011.9:g.64994394_64994395del, NC_000011.9:g.64994394delinsCAC, NC_000011.9:g.64994394delinsCACAC, NC_000011.9:g.64994394delinsCACACAC

Select item 14908846239.

rs1490884623 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TAGA [Show Flanks]
Chromosome:: 11:65234230 (GRCh38)
11:65001702 (GRCh37)
Canonical SPDI:: NC_000011.10:65234230:ATAGA:ATAGATAGA
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATAGATAGA=0./0 (ALFA)
ATAG=0.000011/3 (TOPMED)
ATAG=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.65234232_65234235dup, NC_000011.9:g.65001703_65001706dup

Select item 149084324410.

rs1490843244 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:65224798 (GRCh38)
11:64992269 (GRCh37)
Canonical SPDI:: NC_000011.10:65224797:A:C
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.65224798A>C, NC_000011.9:g.64992269A>C

Select item 149083150211.

rs1490831502 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:65216892 (GRCh38)
11:64984363 (GRCh37)
Canonical SPDI:: NC_000011.10:65216891:A:G
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00834/24 (KOREAN)
HGVS:: NC_000011.10:g.65216892A>G, NC_000011.9:g.64984363A>G

Select item 149078843312.

rs1490788433 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 11:65240635 (GRCh38)
11:65008106 (GRCh37)
Canonical SPDI:: NC_000011.10:65240634:CC:C
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.65240636del, NC_000011.9:g.65008107del

Select item 149069636413.

rs1490696364 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:65242941 (GRCh38)
11:65010412 (GRCh37)
Canonical SPDI:: NC_000011.10:65242940:T:C
Gene:: SLC22A20P (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000011.10:g.65242941T>C, NC_000011.9:g.65010412T>C

Select item 149068763714.

rs1490687637 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:65221856 (GRCh38)
11:64989327 (GRCh37)
Canonical SPDI:: NC_000011.10:65221855:C:G,NC_000011.10:65221855:C:T
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000506/6 (ALFA)
T=0.000352/39 (GnomAD)
T=0.000937/6 (1000Genomes)
T=0.001452/24 (TOMMO)
T=0.003432/10 (KOREAN)
HGVS:: NC_000011.10:g.65221856C>G, NC_000011.10:g.65221856C>T, NC_000011.9:g.64989327C>G, NC_000011.9:g.64989327C>T

Select item 149065449515.

rs1490654495 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:65226316 (GRCh38)
11:64993787 (GRCh37)
Canonical SPDI:: NC_000011.10:65226315:A:T
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000011.10:g.65226316A>T, NC_000011.9:g.64993787A>T

Select item 149055400316.

rs1490554003 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 11:65240465 (GRCh38)
11:65007936 (GRCh37)
Canonical SPDI:: NC_000011.10:65240464:G:
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.65240465del, NC_000011.9:g.65007936del

Select item 149030810617.

rs1490308106 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:65242766 (GRCh38)
11:65010237 (GRCh37)
Canonical SPDI:: NC_000011.10:65242765:G:A,NC_000011.10:65242765:G:T
Gene:: SLC22A20P (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000098/26 (TOPMED)
T=0.000156/1 (1000Genomes)
T=0.004034/68 (TOMMO)
T=0.00616/18 (KOREAN)
T=0.009825/18 (Korea1K)
HGVS:: NC_000011.10:g.65242766G>A, NC_000011.10:g.65242766G>T, NC_000011.9:g.65010237G>A, NC_000011.9:g.65010237G>T

Select item 148988821318.

rs1489888213 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 11:65218853 (GRCh38)
11:64986324 (GRCh37)
Canonical SPDI:: NC_000011.10:65218852:T:C,NC_000011.10:65218852:T:G
Gene:: SLC22A20P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.65218853T>C, NC_000011.10:g.65218853T>G, NC_000011.9:g.64986324T>C, NC_000011.9:g.64986324T>G

Select item 148953359319.

rs1489533593 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CC [Show Flanks]
Chromosome:: 11:65236781 (GRCh38)
11:65004253 (GRCh37)
Canonical SPDI:: NC_000011.10:65236781:CCC:CCCCC
Gene:: SLC22A20P (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: CC=0.000012/3 (GnomAD_exomes)
HGVS:: NC_000011.10:g.65236783_65236784dup, NC_000011.9:g.65004254_65004255dup, NR_033396.1:n.1504_1505dup

Select item 148948464820.

rs1489484648 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:65213757 (GRCh38)
11:64981228 (GRCh37)
Canonical SPDI:: NC_000011.10:65213756:G:A
Gene:: SLC22A20P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000106/2 (TOMMO)
HGVS:: NC_000011.10:g.65213757G>A, NC_000011.9:g.64981228G>A, NG_052817.1:g.37543G>A

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