SNP Links for Gene (Select 440072) - SNP

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Links from Gene

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Select item 14909276681.

rs1490927668 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATT>- [Show Flanks]
Chromosome:: 11:130003594 (GRCh38)
11:129873489 (GRCh37)
Canonical SPDI:: NC_000011.10:130003590:ATTATT:ATT
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATTATT=0.000071/1 (ALFA)
-=0.000034/9 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000011.10:g.130003591ATT[1], NC_000011.9:g.129873486ATT[1], NR_024233.1:n.968ATT[1], NM_001007543.1:c.*94ATT[1]

Select item 14907970272.

rs1490797027 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 11:130004671 (GRCh38)
11:129874566 (GRCh37)
Canonical SPDI:: NC_000011.10:130004670:GG:G
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.130004672del, NC_000011.9:g.129874567del, NR_024233.1:n.2049del, NM_001007543.1:c.*1027del

Select item 14902810523.

rs1490281052 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:130005059 (GRCh38)
11:129874954 (GRCh37)
Canonical SPDI:: NC_000011.10:130005058:C:T
Gene:: PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.130005059C>T, NC_000011.9:g.129874954C>T, NR_024233.1:n.2436C>T, NM_001007543.1:c.*1414C>T

Select item 14898373044.

rs1489837304 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:130003637 (GRCh38)
11:129873532 (GRCh37)
Canonical SPDI:: NC_000011.10:130003636:C:A
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00034/1 (KOREAN)
A=0.00055/1 (Korea1K)
HGVS:: NC_000011.10:g.130003637C>A, NC_000011.9:g.129873532C>A, NR_024233.1:n.1014C>A, NM_001007543.1:c.*140C>A

Select item 14898132205.

rs1489813220 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:130004536 (GRCh38)
11:129874431 (GRCh37)
Canonical SPDI:: NC_000011.10:130004535:G:A,NC_000011.10:130004535:G:C
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.130004536G>A, NC_000011.10:g.130004536G>C, NC_000011.9:g.129874431G>A, NC_000011.9:g.129874431G>C, NR_024233.1:n.1913G>A, NR_024233.1:n.1913G>C, NM_001007543.1:c.*891G>A, NM_001007543.1:c.*891G>C

Select item 14895063896.

rs1489506389 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:130003617 (GRCh38)
11:129873512 (GRCh37)
Canonical SPDI:: NC_000011.10:130003616:C:G
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.130003617C>G, NC_000011.9:g.129873512C>G, NR_024233.1:n.994C>G, NM_001007543.1:c.*120C>G

Select item 14885780267.

rs1488578026 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:130003266 (GRCh38)
11:129873161 (GRCh37)
Canonical SPDI:: NC_000011.10:130003265:C:T
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.130003266C>T, NC_000011.9:g.129873161C>T, NR_024233.1:n.643C>T, NM_001007543.1:c.213C>T

Select item 14875950548.

rs1487595054 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:130003517 (GRCh38)
11:129873412 (GRCh37)
Canonical SPDI:: NC_000011.10:130003516:G:C
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.130003517G>C, NC_000011.9:g.129873412G>C, NR_024233.1:n.894G>C, NM_001007543.1:c.*20G>C

Select item 14869801029.

rs1486980102 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:130004332 (GRCh38)
11:129874227 (GRCh37)
Canonical SPDI:: NC_000011.10:130004331:G:A,NC_000011.10:130004331:G:T
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.130004332G>A, NC_000011.10:g.130004332G>T, NC_000011.9:g.129874227G>A, NC_000011.9:g.129874227G>T, NR_024233.1:n.1709G>A, NR_024233.1:n.1709G>T

Select item 148631012010.

rs1486310120 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 11:130002073 (GRCh38)
11:129871968 (GRCh37)
Canonical SPDI:: NC_000011.10:130002072:A:C,NC_000011.10:130002072:A:G
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.011473/31 (KOREAN)
HGVS:: NC_000011.10:g.130002073A>C, NC_000011.10:g.130002073A>G, NC_000011.9:g.129871968A>C, NC_000011.9:g.129871968A>G

Select item 148611125211.

rs1486111252 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 11:130003238 (GRCh38)
11:129873133 (GRCh37)
Canonical SPDI:: NC_000011.10:130003237:G:C,NC_000011.10:130003237:G:T
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000016/2 (GnomAD_exomes)
HGVS:: NC_000011.10:g.130003238G>C, NC_000011.10:g.130003238G>T, NC_000011.9:g.129873133G>C, NC_000011.9:g.129873133G>T, NR_024233.1:n.615G>C, NR_024233.1:n.615G>T, NM_001007543.1:c.185G>C, NM_001007543.1:c.185G>T

Select item 148470566812.

rs1484705668 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:130003841 (GRCh38)
11:129873736 (GRCh37)
Canonical SPDI:: NC_000011.10:130003840:C:G,NC_000011.10:130003840:C:T
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.130003841C>G, NC_000011.10:g.130003841C>T, NC_000011.9:g.129873736C>G, NC_000011.9:g.129873736C>T, NR_024233.1:n.1218C>G, NR_024233.1:n.1218C>T, NM_001007543.1:c.*344C>G, NM_001007543.1:c.*344C>T

Select item 148433634913.

rs1484336349 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:130003361 (GRCh38)
11:129873256 (GRCh37)
Canonical SPDI:: NC_000011.10:130003360:C:G,NC_000011.10:130003360:C:T
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.130003361C>G, NC_000011.10:g.130003361C>T, NC_000011.9:g.129873256C>G, NC_000011.9:g.129873256C>T, NR_024233.1:n.738C>G, NR_024233.1:n.738C>T, NM_001007543.1:c.308C>G, NM_001007543.1:c.308C>T

Select item 148409204614.

rs1484092046 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:130000971 (GRCh38)
11:129870866 (GRCh37)
Canonical SPDI:: NC_000011.10:130000970:G:A,NC_000011.10:130000970:G:C
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.130000971G>A, NC_000011.10:g.130000971G>C, NC_000011.9:g.129870866G>A, NC_000011.9:g.129870866G>C

Select item 148311161415.

rs1483111614 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 11:130001288 (GRCh38)
11:129871183 (GRCh37)
Canonical SPDI:: NC_000011.10:130001287:C:A,NC_000011.10:130001287:C:T
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.130001288C>A, NC_000011.10:g.130001288C>T, NC_000011.9:g.129871183C>A, NC_000011.9:g.129871183C>T

Select item 148308452116.

rs1483084521 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ACCTAAAGGCC [Show Flanks]
Chromosome:: 11:130000817 (GRCh38)
11:129870713 (GRCh37)
Canonical SPDI:: NC_000011.10:130000817:ACCTAAAGGCC:ACCTAAAGGCCACCTAAAGGCC
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: ACCTAAAGGCCACCTAAAGGCC=0./0 (ALFA)
HGVS:: NC_000011.10:g.130000818_130000828dup, NC_000011.9:g.129870713_129870723dup

Select item 148300887817.

rs1483008878 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:130001919 (GRCh38)
11:129871814 (GRCh37)
Canonical SPDI:: NC_000011.10:130001918:G:A
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.130001919G>A, NC_000011.9:g.129871814G>A

Select item 148273777918.

rs1482737779 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:130002251 (GRCh38)
11:129872146 (GRCh37)
Canonical SPDI:: NC_000011.10:130002250:G:A
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.130002251G>A, NC_000011.9:g.129872146G>A

Select item 148202352319.

rs1482023523 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GGCCCCC [Show Flanks]
Chromosome:: 11:130002143 (GRCh38)
11:129872039 (GRCh37)
Canonical SPDI:: NC_000011.10:130002143:CCCGGCCCCC:CCCGGCCCCCGGCCCCC
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CCCGGCCCCCGGCCCCC=0./0 (ALFA)
CCCGGCC=0./0 (GnomAD)
HGVS:: NC_000011.10:g.130002147_130002153dup, NC_000011.9:g.129872042_129872048dup

Select item 148195454220.

rs1481954542 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:130002230 (GRCh38)
11:129872125 (GRCh37)
Canonical SPDI:: NC_000011.10:130002229:G:A,NC_000011.10:130002229:G:C
Gene:: PRDM10 (Varview), PRDM10-DT (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.130002230G>A, NC_000011.10:g.130002230G>C, NC_000011.9:g.129872125G>A, NC_000011.9:g.129872125G>C