SNP Links for Gene (Select 440700) - SNP

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Select item 14910534921.

rs1491053492 has merged into rs138016226 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAA>-,AA,AAA,AAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:165705549 (GRCh38)
1:165674786 (GRCh37)
Canonical SPDI:: NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:165705539:AAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000001.11:g.165705549_165705563del, NC_000001.11:g.165705551_165705563del, NC_000001.11:g.165705552_165705563del, NC_000001.11:g.165705553_165705563del, NC_000001.11:g.165705556_165705563del, NC_000001.11:g.165705558_165705563del, NC_000001.11:g.165705561_165705563del, NC_000001.11:g.165705562_165705563del, NC_000001.11:g.165705563del, NC_000001.11:g.165705563dup, NC_000001.11:g.165705562_165705563dup, NC_000001.11:g.165705561_165705563dup, NC_000001.11:g.165705560_165705563dup, NC_000001.11:g.165705559_165705563dup, NC_000001.11:g.165705558_165705563dup, NC_000001.11:g.165705552_165705563dup, NC_000001.11:g.165705548_165705563dup, NC_000001.10:g.165674786_165674800del, NC_000001.10:g.165674788_165674800del, NC_000001.10:g.165674789_165674800del, NC_000001.10:g.165674790_165674800del, NC_000001.10:g.165674793_165674800del, NC_000001.10:g.165674795_165674800del, NC_000001.10:g.165674798_165674800del, NC_000001.10:g.165674799_165674800del, NC_000001.10:g.165674800del, NC_000001.10:g.165674800dup, NC_000001.10:g.165674799_165674800dup, NC_000001.10:g.165674798_165674800dup, NC_000001.10:g.165674797_165674800dup, NC_000001.10:g.165674796_165674800dup, NC_000001.10:g.165674795_165674800dup, NC_000001.10:g.165674789_165674800dup, NC_000001.10:g.165674785_165674800dup

Select item 14909248252.

rs1490924825 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:165705539 (GRCh38)
1:165674776 (GRCh37)
Canonical SPDI:: NC_000001.11:165705538:T:A,NC_000001.11:165705538:T:C
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00017/2 (ALFA)
A=0.05802/170 (KOREAN)
HGVS:: NC_000001.11:g.165705539T>A, NC_000001.11:g.165705539T>C, NC_000001.10:g.165674776T>A, NC_000001.10:g.165674776T>C

Select item 14906496053.

rs1490649605 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:165704460 (GRCh38)
1:165673697 (GRCh37)
Canonical SPDI:: NC_000001.11:165704459:C:A,NC_000001.11:165704459:C:T
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.165704460C>A, NC_000001.11:g.165704460C>T, NC_000001.10:g.165673697C>A, NC_000001.10:g.165673697C>T

Select item 14904603224.

rs1490460322 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:165706101 (GRCh38)
1:165675338 (GRCh37)
Canonical SPDI:: NC_000001.11:165706100:A:G
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.165706101A>G, NC_000001.10:g.165675338A>G

Select item 14903617405.

rs1490361740 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:165699413 (GRCh38)
1:165668650 (GRCh37)
Canonical SPDI:: NC_000001.11:165699412:T:G
Gene:: ALDH9A1 (Varview), LOC440700 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.165699413T>G, NC_000001.10:g.165668650T>G, NG_012256.1:g.4251A>C

Select item 14900316566.

rs1490031656 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:165698592 (GRCh38)
1:165667829 (GRCh37)
Canonical SPDI:: NC_000001.11:165698591:C:T
Gene:: ALDH9A1 (Varview), LOC440700 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.165698592C>T, NC_000001.10:g.165667829C>T, NG_012256.1:g.5072G>A, NM_000696.3:c.-34G>A

Select item 14898859377.

rs1489885937 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:165701351 (GRCh38)
1:165670588 (GRCh37)
Canonical SPDI:: NC_000001.11:165701350:T:C
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.165701351T>C, NC_000001.10:g.165670588T>C, NG_012256.1:g.2313A>G

Select item 14897366088.

rs1489736608 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:165708075 (GRCh38)
1:165677312 (GRCh37)
Canonical SPDI:: NC_000001.11:165708074:C:A
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000045/12 (TOPMED)
A=0.000086/12 (GnomAD)
HGVS:: NC_000001.11:g.165708075C>A, NC_000001.10:g.165677312C>A

Select item 14892553369.

rs1489255336 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:165707848 (GRCh38)
1:165677085 (GRCh37)
Canonical SPDI:: NC_000001.11:165707847:C:G,NC_000001.11:165707847:C:T
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000001.11:g.165707848C>G, NC_000001.11:g.165707848C>T, NC_000001.10:g.165677085C>G, NC_000001.10:g.165677085C>T

Select item 148902098810.

rs1489020988 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:165706684 (GRCh38)
1:165675921 (GRCh37)
Canonical SPDI:: NC_000001.11:165706683:C:T
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.165706684C>T, NC_000001.10:g.165675921C>T

Select item 148896673311.

rs1488966733 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:165700538 (GRCh38)
1:165669775 (GRCh37)
Canonical SPDI:: NC_000001.11:165700537:T:C
Gene:: ALDH9A1 (Varview), LOC440700 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.165700538T>C, NC_000001.10:g.165669775T>C, NG_012256.1:g.3126A>G

Select item 148890917512.

rs1488909175 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:165709409 (GRCh38)
1:165678646 (GRCh37)
Canonical SPDI:: NC_000001.11:165709408:T:C
Gene:: LOC440700 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.165709409T>C, NC_000001.10:g.165678646T>C, NR_036683.1:n.657T>C

Select item 148888474413.

rs1488884744 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:165708896 (GRCh38)
1:165678133 (GRCh37)
Canonical SPDI:: NC_000001.11:165708895:A:C
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.165708896A>C, NC_000001.10:g.165678133A>C

Select item 148860694414.

rs1488606944 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:165697848 (GRCh38)
1:165667085 (GRCh37)
Canonical SPDI:: NC_000001.11:165697847:C:A
Gene:: ALDH9A1 (Varview), LOC440700 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.165697848C>A, NC_000001.10:g.165667085C>A, NG_012256.1:g.5816G>T

Select item 148817364915.

rs1488173649 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:165708814 (GRCh38)
1:165678051 (GRCh37)
Canonical SPDI:: NC_000001.11:165708813:T:G
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.165708814T>G, NC_000001.10:g.165678051T>G

Select item 148810608916.

rs1488106089 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:165703632 (GRCh38)
1:165672869 (GRCh37)
Canonical SPDI:: NC_000001.11:165703631:G:C
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.165703632G>C, NC_000001.10:g.165672869G>C, NG_012256.1:g.32C>G

Select item 148769958417.

rs1487699584 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:165700687 (GRCh38)
1:165669924 (GRCh37)
Canonical SPDI:: NC_000001.11:165700686:A:G
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
HGVS:: NC_000001.11:g.165700687A>G, NC_000001.10:g.165669924A>G, NG_012256.1:g.2977T>C

Select item 148768047718.

rs1487680477 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:165704264 (GRCh38)
1:165673501 (GRCh37)
Canonical SPDI:: NC_000001.11:165704263:C:T
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.165704264C>T, NC_000001.10:g.165673501C>T

Select item 148725363719.

rs1487253637 [Homo sapiens]

Variant type:: DEL
Alleles:: GGTGGAGTTTG>- [Show Flanks]
Chromosome:: 1:165705464 (GRCh38)
1:165674701 (GRCh37)
Canonical SPDI:: NC_000001.11:165705463:GGTGGAGTTTG:
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: -=0.000015/2 (GnomAD)
HGVS:: NC_000001.11:g.165705464_165705474del, NC_000001.10:g.165674701_165674711del

Select item 148719414420.

rs1487194144 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:165708374 (GRCh38)
1:165677611 (GRCh37)
Canonical SPDI:: NC_000001.11:165708373:G:A
Gene:: LOC440700 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000071/2 (TOMMO)
HGVS:: NC_000001.11:g.165708374G>A, NC_000001.10:g.165677611G>A

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