SNP Links for Gene (Select 440894) - SNP

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Select item 14913837341.

rs1491383734 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,AA,ATA,ATATA,ATATATA,ATATATATA,ATATATATATA,ATATATATATATA [Show Flanks]
Chromosome:: 2:109989377 (GRCh38)
2:110746955 (GRCh37)
Canonical SPDI:: NC_000002.12:109989377::A,NC_000002.12:109989377::AA,NC_000002.12:109989377::ATA,NC_000002.12:109989377::ATATA,NC_000002.12:109989377::ATATATA,NC_000002.12:109989377::ATATATATA,NC_000002.12:109989377::ATATATATATA,NC_000002.12:109989377::ATATATATATATA
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.0687/18 (Korea1K)
HGVS:: NC_000002.12:g.109989377_109989378insA, NC_000002.12:g.109989377_109989378insAA, NC_000002.12:g.109989377_109989378insATA, NC_000002.12:g.109989377_109989378insATATA, NC_000002.12:g.109989377_109989378insATATATA, NC_000002.12:g.109989377_109989378insATATATATA, NC_000002.12:g.109989377_109989378insATATATATATA, NC_000002.12:g.109989377_109989378insATATATATATATA, NC_000002.11:g.110746954_110746955insA, NC_000002.11:g.110746954_110746955insAA, NC_000002.11:g.110746954_110746955insATA, NC_000002.11:g.110746954_110746955insATATA, NC_000002.11:g.110746954_110746955insATATATA, NC_000002.11:g.110746954_110746955insATATATATA, NC_000002.11:g.110746954_110746955insATATATATATA, NC_000002.11:g.110746954_110746955insATATATATATATA

Select item 14912239612.

rs1491223961 has merged into rs1231377281 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 2:109989389 (GRCh38)
2:110746966 (GRCh37)
Canonical SPDI:: NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000002.12:109989376:TTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTT=0./0 (ALFA)
TTTTTT=0.04737/9 (Korea1K)
HGVS:: NC_000002.12:g.109989389_109989397del, NC_000002.12:g.109989393_109989397del, NC_000002.12:g.109989394_109989397del, NC_000002.12:g.109989395_109989397del, NC_000002.12:g.109989396_109989397del, NC_000002.12:g.109989397del, NC_000002.12:g.109989397dup, NC_000002.12:g.109989396_109989397dup, NC_000002.12:g.109989395_109989397dup, NC_000002.12:g.109989394_109989397dup, NC_000002.12:g.109989393_109989397dup, NC_000002.12:g.109989392_109989397dup, NC_000002.12:g.109989391_109989397dup, NC_000002.12:g.109989389_109989397dup, NC_000002.12:g.109989388_109989397dup, NC_000002.12:g.109989387_109989397dup, NC_000002.12:g.109989382_109989397dup, NC_000002.11:g.110746966_110746974del, NC_000002.11:g.110746970_110746974del, NC_000002.11:g.110746971_110746974del, NC_000002.11:g.110746972_110746974del, NC_000002.11:g.110746973_110746974del, NC_000002.11:g.110746974del, NC_000002.11:g.110746974dup, NC_000002.11:g.110746973_110746974dup, NC_000002.11:g.110746972_110746974dup, NC_000002.11:g.110746971_110746974dup, NC_000002.11:g.110746970_110746974dup, NC_000002.11:g.110746969_110746974dup, NC_000002.11:g.110746968_110746974dup, NC_000002.11:g.110746966_110746974dup, NC_000002.11:g.110746965_110746974dup, NC_000002.11:g.110746964_110746974dup, NC_000002.11:g.110746959_110746974dup

Select item 14905709273.

rs1490570927 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:109994527 (GRCh38)
2:110752104 (GRCh37)
Canonical SPDI:: NC_000002.12:109994526:C:T
Gene:: LINC01123 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00008/1 (ALFA)
T=0.00016/1 (1000Genomes)
T=0.00027/7 (GnomAD)
C=0.5/2 (SGDP_PRJ)
HGVS:: NC_000002.12:g.109994527C>T, NC_000002.11:g.110752104C>T, NR_046110.1:n.1765C>T, NR_046111.1:n.1580C>T, NR_046112.1:n.338C>T, NM_152518.1:c.*244C>T

Select item 14900678964.

rs1490067896 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:109989383 (GRCh38)
2:110746960 (GRCh37)
Canonical SPDI:: NC_000002.12:109989382:T:A
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00082/13 (GnomAD)
A=0.00465/13 (TOMMO)
HGVS:: NC_000002.12:g.109989383T>A, NC_000002.11:g.110746960T>A

Select item 14894075345.

rs1489407534 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 2:109988831 (GRCh38)
2:110746408 (GRCh37)
Canonical SPDI:: NC_000002.12:109988830:T:
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000002.12:g.109988831del, NC_000002.11:g.110746408del

Select item 14893627146.

rs1489362714 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:109985515 (GRCh38)
2:110743092 (GRCh37)
Canonical SPDI:: NC_000002.12:109985514:G:A,NC_000002.12:109985514:G:C
Gene:: LINC01123 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000114/14 (GnomAD)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000002.12:g.109985515G>A, NC_000002.12:g.109985515G>C, NC_000002.11:g.110743092G>A, NC_000002.11:g.110743092G>C

Select item 14886961867.

rs1488696186 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:109985483 (GRCh38)
2:110743060 (GRCh37)
Canonical SPDI:: NC_000002.12:109985482:A:C
Gene:: LINC01123 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.109985483A>C, NC_000002.11:g.110743060A>C

Select item 14885688938.

rs1488568893 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:109986243 (GRCh38)
2:110743820 (GRCh37)
Canonical SPDI:: NC_000002.12:109986242:A:C
Gene:: LINC01123 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000084/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.109986243A>C, NC_000002.11:g.110743820A>C

Select item 14885683909.

rs1488568390 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:109985510 (GRCh38)
2:110743087 (GRCh37)
Canonical SPDI:: NC_000002.12:109985509:G:C
Gene:: LINC01123 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.109985510G>C, NC_000002.11:g.110743087G>C

Select item 148856068610.

rs1488560686 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:109989381 (GRCh38)
2:110746958 (GRCh37)
Canonical SPDI:: NC_000002.12:109989380:T:A
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
A=0.00645/18 (TOMMO)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000002.12:g.109989381T>A, NC_000002.11:g.110746958T>A

Select item 148823991611.

rs1488239916 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:109985025 (GRCh38)
2:110742602 (GRCh37)
Canonical SPDI:: NC_000002.12:109985024:G:C
Gene:: LINC01123 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.109985025G>C, NC_000002.11:g.110742602G>C, NG_001245.4:g.1058G>C

Select item 148691000512.

rs1486910005 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:109994997 (GRCh38)
2:110752574 (GRCh37)
Canonical SPDI:: NC_000002.12:109994996:A:G
Gene:: LINC01123 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00034/4 (ALFA)
G=0.00109/7 (1000Genomes)
G=0.00163/27 (GnomAD)
HGVS:: NC_000002.12:g.109994997A>G, NC_000002.11:g.110752574A>G, NR_046110.1:n.2235A>G, NR_046111.1:n.2050A>G, NR_046112.1:n.808A>G, NM_152518.1:c.*714A>G

Select item 148684605113.

rs1486846051 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:109993959 (GRCh38)
2:110751536 (GRCh37)
Canonical SPDI:: NC_000002.12:109993958:T:C
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.109993959T>C, NC_000002.11:g.110751536T>C

Select item 148609959814.

rs1486099598 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:109994605 (GRCh38)
2:110752182 (GRCh37)
Canonical SPDI:: NC_000002.12:109994604:A:G
Gene:: LINC01123 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.109994605A>G, NC_000002.11:g.110752182A>G, NR_046110.1:n.1843A>G, NR_046111.1:n.1658A>G, NR_046112.1:n.416A>G, NM_152518.1:c.*322A>G

Select item 148529411815.

rs1485294118 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:109994235 (GRCh38)
2:110751812 (GRCh37)
Canonical SPDI:: NC_000002.12:109994234:G:A
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00003/4 (GnomAD)
A=0.000057/15 (TOPMED)
A=0.000354/6 (TOMMO)
A=0.002732/5 (Korea1K)
A=0.003097/9 (KOREAN)
HGVS:: NC_000002.12:g.109994235G>A, NC_000002.11:g.110751812G>A

Select item 148521092016.

rs1485210920 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:109992079 (GRCh38)
2:110749656 (GRCh37)
Canonical SPDI:: NC_000002.12:109992078:C:T
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.109992079C>T, NC_000002.11:g.110749656C>T

Select item 148494844217.

rs1484948442 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:109985883 (GRCh38)
2:110743460 (GRCh37)
Canonical SPDI:: NC_000002.12:109985882:G:A
Gene:: LINC01123 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.00008/1 (ALFA)
HGVS:: NC_000002.12:g.109985883G>A, NC_000002.11:g.110743460G>A

Select item 148446288418.

rs1484462884 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:109994078 (GRCh38)
2:110751655 (GRCh37)
Canonical SPDI:: NC_000002.12:109994077:C:A
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.109994078C>A, NC_000002.11:g.110751655C>A

Select item 148284552019.

rs1482845520 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:109988326 (GRCh38)
2:110745903 (GRCh37)
Canonical SPDI:: NC_000002.12:109988325:T:C
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.109988326T>C, NC_000002.11:g.110745903T>C, NG_011684.3:g.39A>G, NR_046110.1:n.977T>C, NR_046111.1:n.977T>C, NM_152518.1:c.46T>C

Select item 148152778820.

rs1481527788 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 2:109994376 (GRCh38)
2:110751953 (GRCh37)
Canonical SPDI:: NC_000002.12:109994375:G:
Gene:: LINC01123 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000011/1 (GnomAD)
-=0.000015/4 (TOPMED)
-=0.000781/5 (1000Genomes)
HGVS:: NC_000002.12:g.109994376del, NC_000002.11:g.110751953del

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