SNP Links for Gene (Select 440895) - SNP

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Select item 14900679731.

rs1490067973 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:109956408 (GRCh38)
2:110713985 (GRCh37)
Canonical SPDI:: NC_000002.12:109956407:G:A
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00004/2 (GnomAD)
HGVS:: NC_000002.12:g.109956408G>A, NC_000002.11:g.110713985G>A

Select item 14900530492.

rs1490053049 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:109962060 (GRCh38)
2:110719637 (GRCh37)
Canonical SPDI:: NC_000002.12:109962059:C:T
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00012/1 (GnomAD)
HGVS:: NC_000002.12:g.109962060C>T, NC_000002.11:g.110719637C>T

Select item 14887427383.

rs1488742738 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:109946616 (GRCh38)
2:110704193 (GRCh37)
Canonical SPDI:: NC_000002.12:109946615:G:A
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview), LOC124907865 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.109946616G>A, NC_000002.11:g.110704193G>A

Select item 14886591304.

rs1488659130 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 2:109968536 (GRCh38)
2:110726113 (GRCh37)
Canonical SPDI:: NC_000002.12:109968535:A:C,NC_000002.12:109968535:A:G
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
G=0.00008/1 (TOMMO)
HGVS:: NC_000002.12:g.109968536A>C, NC_000002.12:g.109968536A>G, NC_000002.11:g.110726113A>C, NC_000002.11:g.110726113A>G, NR_027143.3:n.820A>C, NR_027143.3:n.820A>G, NR_027145.2:n.3181A>C, NR_027145.2:n.3181A>G, NR_027144.1:n.1917A>C, NR_027144.1:n.1917A>G, NM_001145634.1:c.*520A>C, NM_001145634.1:c.*520A>G, NR_027142.1:n.738A>C, NR_027142.1:n.738A>G

Select item 14886061285.

rs1488606128 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:109958236 (GRCh38)
2:110715813 (GRCh37)
Canonical SPDI:: NC_000002.12:109958235:T:C
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: C=0.0013/4 (TOMMO)
C=0.0439/13 (KOREAN)
HGVS:: NC_000002.12:g.109958236T>C, NC_000002.11:g.110715813T>C

Select item 14875592416.

rs1487559241 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:109960426 (GRCh38)
2:110718003 (GRCh37)
Canonical SPDI:: NC_000002.12:109960425:A:G
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.109960426A>G, NC_000002.11:g.110718003A>G

Select item 14872383497.

rs1487238349 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:109968389 (GRCh38)
2:110725966 (GRCh37)
Canonical SPDI:: NC_000002.12:109968388:A:C
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.109968389A>C, NC_000002.11:g.110725966A>C, NR_027143.3:n.673A>C, NR_027145.2:n.3034A>C, NR_027144.1:n.1770A>C, NM_001145634.1:c.*373A>C, NR_027142.1:n.591A>C

Select item 14870401308.

rs1487040130 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:109967867 (GRCh38)
2:110725444 (GRCh37)
Canonical SPDI:: NC_000002.12:109967866:T:C
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.109967867T>C, NC_000002.11:g.110725444T>C

Select item 14868147419.

rs1486814741 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:109968008 (GRCh38)
2:110725585 (GRCh37)
Canonical SPDI:: NC_000002.12:109968007:T:C
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00005/1 (GnomAD)
HGVS:: NC_000002.12:g.109968008T>C, NC_000002.11:g.110725585T>C

Select item 148667355210.

rs1486673552 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:109967584 (GRCh38)
2:110725161 (GRCh37)
Canonical SPDI:: NC_000002.12:109967583:C:G
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.109967584C>G, NC_000002.11:g.110725161C>G

Select item 148625583011.

rs1486255830 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 2:109962539 (GRCh38)
2:110720116 (GRCh37)
Canonical SPDI:: NC_000002.12:109962538:T:C,NC_000002.12:109962538:T:G
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.109962539T>C, NC_000002.12:g.109962539T>G, NC_000002.11:g.110720116T>C, NC_000002.11:g.110720116T>G

Select item 148546615312.

rs1485466153 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:109951989 (GRCh38)
2:110709566 (GRCh37)
Canonical SPDI:: NC_000002.12:109951988:C:G
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.109951989C>G, NC_000002.11:g.110709566C>G

Select item 148531657113.

rs1485316571 has merged into rs113232620 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT [Show Flanks]
Chromosome:: 2:109946276 (GRCh38)
2:110703853 (GRCh37)
Canonical SPDI:: NC_000002.12:109946266:TTTTTTTTTTT:TTTTTTTTT,NC_000002.12:109946266:TTTTTTTTTTT:TTTTTTTTTT,NC_000002.12:109946266:TTTTTTTTTTT:TTTTTTTTTTTT
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview), LOC124907865 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000002.12:g.109946276_109946277del, NC_000002.12:g.109946277del, NC_000002.12:g.109946277dup, NC_000002.11:g.110703853_110703854del, NC_000002.11:g.110703854del, NC_000002.11:g.110703854dup

Select item 148527684214.

rs1485276842 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:109958366 (GRCh38)
2:110715943 (GRCh37)
Canonical SPDI:: NC_000002.12:109958365:G:A
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00034/4 (ALFA)
HGVS:: NC_000002.12:g.109958366G>A, NC_000002.11:g.110715943G>A

Select item 148485369415.

rs1484853694 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 2:109958291 (GRCh38)
2:110715868 (GRCh37)
Canonical SPDI:: NC_000002.12:109958290:A:G,NC_000002.12:109958290:A:T
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.194/79 (KOREAN)
HGVS:: NC_000002.12:g.109958291A>G, NC_000002.12:g.109958291A>T, NC_000002.11:g.110715868A>G, NC_000002.11:g.110715868A>T

Select item 148426714516.

rs1484267145 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 2:109952820 (GRCh38)
2:110710398 (GRCh37)
Canonical SPDI:: NC_000002.12:109952820:G:GG
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0.0548/650 (ALFA)
G=0.21174/1356 (1000Genomes)
HGVS:: NC_000002.12:g.109952821dup, NC_000002.11:g.110710398dup

Select item 148403529817.

rs1484035298 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:109946006 (GRCh38)
2:110703583 (GRCh37)
Canonical SPDI:: NC_000002.12:109946005:T:G
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview), LOC124907865 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00007/1 (GnomAD)
HGVS:: NC_000002.12:g.109946006T>G, NC_000002.11:g.110703583T>G

Select item 148390486518.

rs1483904865 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:109955847 (GRCh38)
2:110713424 (GRCh37)
Canonical SPDI:: NC_000002.12:109955846:T:G
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.109955847T>G, NC_000002.11:g.110713424T>G

Select item 148377256119.

rs1483772561 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:109965335 (GRCh38)
2:110722912 (GRCh37)
Canonical SPDI:: NC_000002.12:109965334:G:C
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00002/1 (GnomAD)
HGVS:: NC_000002.12:g.109965335G>C, NC_000002.11:g.110722912G>C

Select item 148372944220.

rs1483729442 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:109956243 (GRCh38)
2:110713820 (GRCh37)
Canonical SPDI:: NC_000002.12:109956242:G:A
Gene:: LOC440895 (Varview), LIMS3-LOC440895 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000002.12:g.109956243G>A, NC_000002.11:g.110713820G>A

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