SNP Links for Gene (Select 441317) - SNP

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Select item 14862536921.

rs1486253692 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 8:7558858 (GRCh38)
8:7416380 (GRCh37)
Canonical SPDI:: NC_000008.11:7558857:C:A,NC_000008.11:7558857:C:T
Gene:: FAM90A7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00134/4 (TOMMO)
T=0.01763/14 (KOREAN)
HGVS:: NC_000008.11:g.7558858C>A, NC_000008.11:g.7558858C>T, NC_000008.10:g.7416380C>A, NC_000008.10:g.7416380C>T, NW_018654717.1:g.5359413G>T, NW_018654717.1:g.5359413G>A, NT_187570.1:g.241961C>A, NT_187570.1:g.241961C>T

Select item 14761999152.

rs1476199915 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 8:7558943 (GRCh38)
8:7416465 (GRCh37)
Canonical SPDI:: NC_000008.11:7558942:T:G
Gene:: FAM90A7 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000008.11:g.7558943T>G, NC_000008.10:g.7416465T>G, NW_018654717.1:g.5359328A>C, NT_187570.1:g.242046T>G, NM_001136572.1:c.275A>C, NR_046343.1:n.162A>C, NM_001397387.1:c.275A>C, NP_001384316.1:p.Asn92Thr

Select item 14719770313.

rs1471977031 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 8:7558837 (GRCh38)
8:7416359 (GRCh37)
Canonical SPDI:: NC_000008.11:7558836:C:A
Gene:: FAM90A7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00034/4 (ALFA)
HGVS:: NC_000008.11:g.7558837C>A, NC_000008.10:g.7416359C>A, NW_018654717.1:g.5359434G>T, NT_187570.1:g.241940C>A

Select item 14646598174.

rs1464659817 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 8:7559759 (GRCh38)
8:7417281 (GRCh37)
Canonical SPDI:: NC_000008.11:7559758:G:C
Gene:: FAM90A7 (Varview), LOC105377800 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000008.11:g.7559759G>C, NC_000008.10:g.7417281G>C, NW_018654717.1:g.5358514C>G, NT_187570.1:g.242862G>C

Select item 14603305105.

rs1460330510 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 8:7559009 (GRCh38)
8:7416531 (GRCh37)
Canonical SPDI:: NC_000008.11:7559008:G:A
Gene:: FAM90A7 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000008.11:g.7559009G>A, NC_000008.10:g.7416531G>A, NW_018654717.1:g.5359262C>T, NT_187570.1:g.242112G>A, NM_001136572.1:c.209C>T, NR_046343.1:n.96C>T, NM_001397387.1:c.209C>T, NP_001384316.1:p.Pro70Leu

Select item 14529933186.

rs1452993318 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 8:7558626 (GRCh38)
8:7416148 (GRCh37)
Canonical SPDI:: NC_000008.11:7558625:C:A
Gene:: FAM90A7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000008.11:g.7558626C>A, NC_000008.10:g.7416148C>A, NW_018654717.1:g.5359645G>T, NT_187570.1:g.241729C>A

Select item 14503734797.

rs1450373479 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 8:7559147 (GRCh38)
8:7416669 (GRCh37)
Canonical SPDI:: NC_000008.11:7559146:G:A
Gene:: FAM90A7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000008.11:g.7559147G>A, NC_000008.10:g.7416669G>A, NW_018654717.1:g.5359124C>T, NT_187570.1:g.242250G>A

Select item 14497354058.

rs1449735405 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:7558662 (GRCh38)
8:7416184 (GRCh37)
Canonical SPDI:: NC_000008.11:7558661:C:T
Gene:: FAM90A7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000008.11:g.7558662C>T, NC_000008.10:g.7416184C>T, NW_018654717.1:g.5359609G>A, NT_187570.1:g.241765C>T

Select item 14492168279.

rs1449216827 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 8:7558968 (GRCh38)
8:7416490 (GRCh37)
Canonical SPDI:: NC_000008.11:7558967:G:A
Gene:: FAM90A7 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000008.11:g.7558968G>A, NC_000008.10:g.7416490G>A, NW_018654717.1:g.5359303C>T, NT_187570.1:g.242071G>A, NM_001136572.1:c.250C>T, NR_046343.1:n.137C>T, NM_001397387.1:c.250C>T, NP_001384316.1:p.Pro84Ser

Select item 144424837410.

rs1444248374 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 8:7558797 (GRCh38)
8:7416319 (GRCh37)
Canonical SPDI:: NC_000008.11:7558796:G:A
Gene:: FAM90A7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.0027/32 (ALFA)
A=0.0254/160 (GnomAD)
HGVS:: NC_000008.11:g.7558797G>A, NC_000008.10:g.7416319G>A, NW_018654717.1:g.5359474C>T, NT_187570.1:g.241900G>A

Select item 143256647011.

rs1432566470 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:7559005 (GRCh38)
8:7416527 (GRCh37)
Canonical SPDI:: NC_000008.11:7559004:C:T
Gene:: FAM90A7 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000008.11:g.7559005C>T, NC_000008.10:g.7416527C>T, NW_018654717.1:g.5359266G>A, NT_187570.1:g.242108C>T, NM_001136572.1:c.213G>A, NR_046343.1:n.100G>A, NM_001397387.1:c.213G>A

Select item 143234845812.

rs1432348458 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 8:7559543 (GRCh38)
8:7417065 (GRCh37)
Canonical SPDI:: NC_000008.11:7559542:T:G
Gene:: FAM90A7 (Varview), LOC105377800 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000008.11:g.7559543T>G, NC_000008.10:g.7417065T>G, NT_187570.1:g.242646T>G

Select item 141769839213.

rs1417698392 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 8:7558956 (GRCh38)
8:7416478 (GRCh37)
Canonical SPDI:: NC_000008.11:7558955:G:C
Gene:: FAM90A7 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000008.11:g.7558956G>C, NC_000008.10:g.7416478G>C, NW_018654717.1:g.5359315C>G, NT_187570.1:g.242059G>C, NM_001136572.1:c.262C>G, NR_046343.1:n.149C>G, NM_001397387.1:c.262C>G, NP_001384316.1:p.Arg88Gly

Select item 140472882514.

rs1404728825 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 8:7558933 (GRCh38)
8:7416455 (GRCh37)
Canonical SPDI:: NC_000008.11:7558932:G:T
Gene:: FAM90A7 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0.00008/1 (ALFA)
HGVS:: NC_000008.11:g.7558933G>T, NC_000008.10:g.7416455G>T, NW_018654717.1:g.5359338C>A, NT_187570.1:g.242036G>T, NM_001136572.1:c.285C>A, NR_046343.1:n.172C>A, NM_001397387.1:c.285C>A

Select item 139729767615.

rs1397297676 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 8:7559152 (GRCh38)
8:7416674 (GRCh37)
Canonical SPDI:: NC_000008.11:7559151:C:A
Gene:: FAM90A7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00059/7 (ALFA)
A=0.00612/4 (GnomAD)
HGVS:: NC_000008.11:g.7559152C>A, NC_000008.10:g.7416674C>A, NW_018654717.1:g.5359119G>T, NT_187570.1:g.242255C>A

Select item 139664376316.

rs1396643763 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 8:7558983 (GRCh38)
8:7416505 (GRCh37)
Canonical SPDI:: NC_000008.11:7558982:T:A
Gene:: FAM90A7 (Varview)
Functional Consequence:: stop_gained,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0054/64 (ALFA)
A=0.03147/142 (GnomAD_exomes)
A=0.1718/747 (GnomAD)
T=0.5/2 (SGDP_PRJ)
HGVS:: NC_000008.11:g.7558983T>A, NC_000008.10:g.7416505T>A, NW_018654717.1:g.5359288A>T, NT_187570.1:g.242086T>A, NM_001136572.1:c.235A>T, NR_046343.1:n.122A>T, NM_001397387.1:c.235A>T, NP_001384316.1:p.Lys79Ter

Select item 138264086617.

rs1382640866 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 8:7558593 (GRCh38)
8:7416115 (GRCh37)
Canonical SPDI:: NC_000008.11:7558592:C:G
Gene:: FAM90A7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.00017/2 (ALFA)
HGVS:: NC_000008.11:g.7558593C>G, NC_000008.10:g.7416115C>G, NW_018654717.1:g.5359678G>C, NT_187570.1:g.241696C>G

Select item 138141142518.

rs1381411425 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:7558818 (GRCh38)
8:7416340 (GRCh37)
Canonical SPDI:: NC_000008.11:7558817:C:T
Gene:: FAM90A7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000008.11:g.7558818C>T, NC_000008.10:g.7416340C>T, NW_018654717.1:g.5359453G>A, NT_187570.1:g.241921C>T

Select item 137094058019.

rs1370940580 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 8:7558957 (GRCh38)
8:7416479 (GRCh37)
Canonical SPDI:: NC_000008.11:7558956:G:A
Gene:: FAM90A7 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000008.11:g.7558957G>A, NC_000008.10:g.7416479G>A, NW_018654717.1:g.5359314C>T, NT_187570.1:g.242060G>A, NM_001136572.1:c.261C>T, NR_046343.1:n.148C>T, NM_001397387.1:c.261C>T

Select item 136410058320.

rs1364100583 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:7559548 (GRCh38)
8:7417070 (GRCh37)
Canonical SPDI:: NC_000008.11:7559547:C:T
Gene:: FAM90A7 (Varview), LOC105377800 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
HGVS:: NC_000008.11:g.7559548C>T, NC_000008.10:g.7417070C>T, NW_018654717.1:g.5358725G>A, NT_187570.1:g.242651C>T

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